Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.85377 * 334.66612 * 14 13 11 16 16 C 1.53787 * 113.61241 * 105.86495 * 14 13 11 17 17 C 1.53956 * 87.01963 * 139.94936 * 16 14 13 18 18 H 1.09000 * 113.61282 * 89.20046 * 17 16 14 19 19 N 1.46901 * 113.66501 * 220.06214 * 17 16 14 20 20 C 1.46903 * 111.00135 * 252.55881 * 19 17 16 21 21 C 1.50704 * 109.46860 * 180.02562 * 20 19 17 22 22 C 1.38230 * 120.40387 * 90.00343 * 21 20 19 23 23 N 1.31848 * 120.81987 * 179.97438 * 22 21 20 24 24 C 1.31862 * 121.75019 * 0.02562 * 23 22 21 25 25 C 1.38422 * 120.72838 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.44602 * 180.02562 * 25 24 23 27 27 C 1.38588 * 120.40190 * 269.72494 * 21 20 19 28 28 C 1.53771 * 87.11165 * 334.63741 * 17 16 14 29 29 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 32 32 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.61246 * 254.52648 * 16 14 13 34 34 H 1.09004 * 113.61592 * 25.42790 * 16 14 13 35 35 H 1.00897 * 110.99990 * 16.51686 * 19 17 16 36 36 H 1.08995 * 109.47403 * 300.00451 * 20 19 17 37 37 H 1.09000 * 109.46818 * 60.00187 * 20 19 17 38 38 H 1.08001 * 119.59100 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.63616 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.80555 * 359.97438 * 27 21 20 41 41 H 1.09000 * 113.61410 * 270.81205 * 28 17 16 42 42 H 1.09000 * 113.69120 * 139.92107 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.3322 -7.7932 0.4277 16 6 2.4750 -8.4266 -1.3580 17 6 2.8601 -9.6881 -0.5640 18 1 2.0068 -10.3077 -0.2880 19 7 3.9511 -10.4592 -1.1749 20 6 3.4470 -11.7045 -1.7692 21 6 4.5923 -12.4671 -2.3841 22 6 5.3023 -13.3869 -1.6354 23 7 6.3053 -14.0590 -2.1652 24 6 6.6717 -13.8845 -3.4198 25 6 6.0080 -12.9805 -4.2313 26 9 6.3879 -12.8066 -5.5161 27 6 4.9426 -12.2589 -3.7087 28 6 3.3252 -8.7453 0.5582 29 1 -0.4850 -0.8401 0.0004 30 1 3.1239 -3.7308 -0.8925 31 1 3.1252 -3.7316 0.8875 32 1 3.8011 -6.1834 -0.0032 33 1 1.5359 -8.5224 -1.9030 34 1 3.2845 -8.0339 -1.9733 35 1 4.4457 -9.9064 -1.8588 36 1 2.9795 -12.3133 -0.9954 37 1 2.7124 -11.4683 -2.5390 38 1 5.0316 -13.5578 -0.6039 39 1 7.4982 -14.4537 -3.8189 40 1 4.4025 -11.5501 -4.3188 41 1 4.3677 -8.4399 0.4678 42 1 3.0724 -9.0968 1.5585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566832316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = -57.526431 kcal Electronic energy + Delta-G solvation = -24752.945993 eV Core-core repulsion = 20772.834240 eV Total energy + Delta-G solvation = -3980.111753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.03921 -41.31931 -41.03617 -39.54110 -36.36259 -34.75747 -34.47692 -32.92432 -31.81907 -30.64150 -27.18506 -26.92587 -26.65392 -24.79751 -24.13571 -22.91424 -21.75551 -20.98994 -20.34301 -18.41617 -18.38097 -18.01580 -17.83121 -17.74837 -16.90371 -16.66535 -16.55207 -16.49960 -15.74628 -15.47874 -15.38134 -15.04815 -14.85298 -14.63056 -14.47970 -14.26350 -14.15702 -13.96660 -13.90994 -13.65900 -13.40235 -13.27857 -12.74040 -12.73477 -12.19745 -11.98503 -11.95235 -11.80766 -11.54074 -11.10092 -11.00401 -10.86814 -10.66591 -10.33432 -10.09976 -9.95599 -9.35202 -8.93008 -8.87576 -6.28269 -0.15172 0.00774 1.20517 1.50309 1.52136 1.60453 1.80753 2.20747 2.34883 2.52868 2.93405 3.01828 3.13003 3.24772 3.42626 3.52747 3.62036 3.70503 3.72400 3.86481 3.88249 3.92530 3.96647 4.11455 4.17094 4.36990 4.42257 4.55814 4.70716 4.76753 4.79591 4.80248 4.83376 4.97062 5.07556 5.08764 5.11270 5.53640 5.58098 5.63515 6.00481 6.14341 6.34115 6.46211 6.77431 7.05672 7.17547 8.50403 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.001562 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.460689 B =17923.542349 C =18607.419573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.136 2.864 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.615 4.615 8 H 0.075 0.925 9 S -0.196 6.196 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.699 5.699 14 C 0.109 3.891 15 H 0.092 0.908 16 C -0.176 4.176 17 C 0.085 3.915 18 H 0.113 0.887 19 N -0.671 5.671 20 C 0.102 3.898 21 C -0.100 4.100 22 C 0.106 3.894 23 N -0.481 5.481 24 C 0.067 3.933 25 C 0.035 3.965 26 F -0.138 7.138 27 C -0.105 4.105 28 C -0.118 4.118 29 H 0.260 0.740 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.416 0.584 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.347 0.653 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.812 -29.981 -4.914 33.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.762 4.762 8 H 0.093 0.907 9 S 0.030 5.970 10 C -0.263 4.263 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.352 5.352 14 C 0.004 3.996 15 H 0.110 0.890 16 C -0.217 4.217 17 C -0.025 4.025 18 H 0.131 0.869 19 N -0.301 5.301 20 C -0.027 4.027 21 C -0.103 4.103 22 C -0.052 4.052 23 N -0.189 5.189 24 C -0.091 4.091 25 C 0.013 3.987 26 F -0.117 7.117 27 C -0.132 4.132 28 C -0.157 4.157 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.119 0.881 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.302 -29.646 -3.848 32.721 hybrid contribution 0.816 -0.138 -1.735 1.923 sum 14.118 -29.784 -5.583 33.431 Atomic orbital electron populations 1.70925 1.08010 1.29986 1.45875 1.27836 0.96319 1.06385 0.91685 0.82720 0.73945 0.69509 0.78442 1.20545 1.18780 1.18799 1.24043 0.96525 0.92843 1.62826 0.90667 1.85048 1.13263 1.01166 1.97480 1.23252 1.02140 0.93908 1.06980 1.20033 0.86391 0.86685 0.74986 1.90685 1.17435 1.86067 1.50399 1.45726 1.09982 1.04814 1.74647 1.22497 0.99445 0.79280 0.98382 0.89018 1.24230 1.02520 0.97806 0.97127 1.22750 0.93573 0.91499 0.94718 0.86863 1.60478 1.25614 1.06563 1.37443 1.20931 0.92211 0.90880 0.98702 1.20799 0.98780 0.97877 0.92798 1.23161 0.89840 0.91066 1.01108 1.67821 1.14921 1.24269 1.11898 1.23209 1.00051 0.96299 0.89579 1.18945 0.98394 1.00920 0.80424 1.91524 1.90589 1.94504 1.35034 1.21846 0.95710 0.99220 0.96424 1.23384 0.99453 0.93426 0.99416 0.92883 0.87122 0.87069 0.74611 0.91974 0.88856 0.83327 0.87814 0.92723 0.80155 0.80221 0.82345 0.88121 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.93 13.67 21.65 0.30 -57.63 16 2 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 3 Si 1.14 48.98 29.92 68.60 2.05 51.04 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.61 -35.32 9.50 67.95 0.65 -34.68 16 8 H 0.08 4.04 7.80 -2.91 -0.02 4.01 16 9 S -0.20 -10.75 19.60 -56.49 -1.11 -11.85 16 10 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 11 C 0.53 18.86 7.85 87.66 0.69 19.55 16 12 O -0.57 -25.50 15.48 -3.04 -0.05 -25.54 16 13 N -0.70 -16.01 5.36 -440.03 -2.36 -18.37 16 14 C 0.11 2.08 4.21 45.52 0.19 2.27 16 15 H 0.09 2.23 7.50 -2.39 -0.02 2.21 16 16 C -0.18 -2.56 7.51 31.18 0.23 -2.33 16 17 C 0.09 0.83 4.18 45.50 0.19 1.02 16 18 H 0.11 0.94 7.87 -2.39 -0.02 0.92 16 19 N -0.67 -5.35 6.61 -492.56 -3.25 -8.61 16 20 C 0.10 0.63 5.68 85.56 0.49 1.12 16 21 C -0.10 -0.88 5.41 -19.78 -0.11 -0.99 16 22 C 0.11 1.13 10.86 84.69 0.92 2.05 16 23 N -0.48 -6.94 10.36 -195.67 -2.03 -8.97 16 24 C 0.07 0.84 11.17 84.73 0.95 1.79 16 25 C 0.03 0.44 7.35 22.47 0.17 0.61 16 26 F -0.14 -2.03 17.28 44.97 0.78 -1.26 16 27 C -0.11 -1.05 9.85 22.51 0.22 -0.83 16 28 C -0.12 -1.38 7.63 31.12 0.24 -1.14 16 29 H 0.26 17.18 7.12 -92.70 -0.66 16.52 16 30 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.42 6.74 8.71 -92.71 -0.81 5.93 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 35 H 0.35 2.76 8.19 -89.70 -0.73 2.03 16 36 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 37 H 0.05 0.31 8.09 -2.39 -0.02 0.29 16 38 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.10 1.03 8.11 -2.39 -0.02 1.02 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.59 378.50 -0.31 -79.91 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.37 Total: 17.37 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 5.72 Total: -16.08 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -7.34 Total: -93.58 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.11 Total: -11.85 kcal Total: -79.59 -0.31 -79.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.380 kcal (2) G-P(sol) polarization free energy of solvation -79.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds