Wall clock time and date at job start Tue Mar 31 2020 22:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47514 * 240.00441 * 3 2 1 5 5 H 1.48507 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47075 * 120.00134 * 3 2 1 7 7 C 1.38943 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00222 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99891 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46908 * 180.02562 * 12 10 9 14 14 C 1.48803 * 111.18581 * 59.04768 * 13 12 10 15 15 C 1.54948 * 103.34764 * 159.50644 * 14 13 12 16 16 C 1.54598 * 102.91774 * 322.68858 * 15 14 13 17 17 C 1.47901 * 110.99602 * 176.38813 * 13 12 10 18 18 H 1.09003 * 109.92042 * 333.69746 * 17 13 12 19 19 C 1.53001 * 109.92099 * 94.79876 * 17 13 12 20 20 N 1.46493 * 109.47245 * 296.78066 * 19 17 13 21 21 C 1.34778 * 120.00231 * 173.58922 * 20 19 17 22 22 O 1.21618 * 119.99930 * 359.97438 * 21 20 19 23 23 C 1.47170 * 119.99816 * 179.97438 * 21 20 19 24 24 C 1.38247 * 128.47242 * 180.02562 * 23 21 20 25 25 N 1.31245 * 111.88944 * 179.97438 * 24 23 21 26 26 N 1.27337 * 120.03339 * 0.02562 * 25 24 23 27 27 S 1.56631 * 109.74528 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00587 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99940 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47409 * 59.99561 * 12 10 9 31 31 H 1.09001 * 109.47001 * 299.99741 * 12 10 9 32 32 H 1.08996 * 110.52189 * 41.07403 * 14 13 12 33 33 H 1.08996 * 110.84169 * 278.08715 * 14 13 12 34 34 H 1.08995 * 110.72061 * 204.33595 * 15 14 13 35 35 H 1.08992 * 110.72309 * 81.04634 * 15 14 13 36 36 H 1.09005 * 110.31049 * 263.04089 * 16 15 14 37 37 H 1.08998 * 110.30877 * 140.87427 * 16 15 14 38 38 H 1.09004 * 109.47223 * 176.77438 * 19 17 13 39 39 H 1.09004 * 109.46676 * 56.77529 * 19 17 13 40 40 H 0.97009 * 119.99833 * 353.57940 * 20 19 17 41 41 H 1.08004 * 124.05733 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0004 14 6 3.0895 -5.9244 1.1902 15 6 3.6161 -7.3767 1.3104 16 6 2.3860 -8.2243 0.9124 17 6 1.4956 -7.2778 0.0861 18 1 0.5333 -7.1468 0.5811 19 6 1.2860 -7.8515 -1.3167 20 7 0.4185 -6.9561 -2.0860 21 6 0.1984 -7.1910 -3.3947 22 8 0.7204 -8.1462 -3.9372 23 6 -0.6735 -6.2917 -4.1673 24 6 -1.0173 -6.3661 -5.5043 25 7 -1.8203 -5.3902 -5.8580 26 7 -2.1854 -4.5226 -5.0004 27 16 -1.5401 -4.8481 -3.6108 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9209 0.8886 32 1 2.5231 -5.6457 2.0787 33 1 3.9129 -5.2291 1.0266 34 1 3.9188 -7.5936 2.3348 35 1 4.4414 -7.5462 0.6190 36 1 1.8552 -8.5621 1.8025 37 1 2.6940 -9.0775 0.3081 38 1 0.8192 -8.8337 -1.2416 39 1 2.2490 -7.9443 -1.8189 40 1 0.0024 -6.1940 -1.6533 41 1 -0.6678 -7.1356 -6.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567359917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:55 Heat of formation + Delta-G solvation = 18.418072 kcal Electronic energy + Delta-G solvation = -27191.092810 eV Core-core repulsion = 23234.194220 eV Total energy + Delta-G solvation = -3956.898590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99274 -40.07966 -39.08934 -37.68961 -34.85081 -34.04296 -32.37650 -32.15380 -31.25681 -30.17986 -27.74689 -26.88203 -25.26439 -24.22180 -22.71598 -21.35486 -20.92580 -20.22150 -19.42961 -19.22903 -17.98084 -17.71343 -16.50688 -16.19644 -15.96070 -15.82866 -15.30378 -15.17462 -14.78095 -14.63047 -14.46941 -14.02789 -13.91975 -13.82664 -12.98046 -12.87155 -12.53839 -12.42404 -12.19621 -12.10670 -11.75319 -11.57089 -11.48757 -11.25537 -11.04997 -10.82596 -10.59771 -10.52717 -10.48415 -10.29621 -10.28291 -10.26729 -10.01977 -9.56434 -9.29964 -8.56516 -8.14959 -8.03128 -6.50074 -3.91077 -0.44034 0.63998 1.31414 1.79396 2.72270 2.83452 3.14466 3.21759 3.25356 3.75519 3.83393 3.85838 4.14619 4.40501 4.49963 4.56660 4.59749 4.86007 4.94131 5.11054 5.16085 5.21393 5.36507 5.40745 5.49437 5.56524 5.65488 5.69596 5.77897 5.89978 5.96616 6.11228 6.15872 6.23680 6.51601 7.02691 7.09132 7.11897 7.45661 7.47563 7.81346 7.96259 8.51256 9.09269 9.43052 9.94215 10.67234 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004565 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.097496 B = 6132.524044 C = 9301.676465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.440 3.560 11 O -0.575 6.575 12 C 0.036 3.964 13 N -0.489 5.489 14 C 0.041 3.959 15 C -0.125 4.125 16 C -0.120 4.120 17 C 0.045 3.955 18 H 0.058 0.942 19 C 0.137 3.863 20 N -0.714 5.714 21 C 0.604 3.396 22 O -0.521 6.521 23 C -0.295 4.295 24 C 0.074 3.926 25 N -0.255 5.255 26 N -0.254 5.254 27 S 0.442 5.558 28 H 0.273 0.727 29 H 0.391 0.609 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.398 0.602 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -15.720 -0.189 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.226 3.774 11 O -0.459 6.459 12 C -0.096 4.096 13 N -0.213 5.213 14 C -0.086 4.086 15 C -0.163 4.163 16 C -0.158 4.158 17 C -0.064 4.064 18 H 0.076 0.924 19 C 0.014 3.986 20 N -0.367 5.367 21 C 0.387 3.613 22 O -0.397 6.397 23 C -0.436 4.436 24 C -0.094 4.094 25 N -0.119 5.119 26 N -0.235 5.235 27 S 0.577 5.423 28 H 0.083 0.917 29 H 0.225 0.775 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.235 0.765 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.619 -14.562 -0.906 15.032 hybrid contribution -0.293 0.135 0.465 0.566 sum -3.911 -14.428 -0.441 14.955 Atomic orbital electron populations 1.69582 1.05913 1.28426 1.50136 1.25242 0.95628 0.99707 0.97093 0.85937 0.78832 0.80476 0.79126 1.19855 1.20916 1.19878 1.19636 0.93345 0.82092 1.47951 0.87918 1.41833 1.09119 1.04559 1.64128 1.19559 0.88409 0.84368 0.85108 1.90489 1.13543 1.86680 1.55227 1.22176 0.94607 0.92317 1.00530 1.64553 1.16657 0.99092 1.41017 1.23407 0.98071 0.97043 0.90109 1.22533 0.97571 0.94906 1.01292 1.22326 0.96384 0.97939 0.99189 1.22731 0.97363 0.91793 0.94538 0.92375 1.21591 0.94897 0.91712 0.90437 1.46069 1.50090 1.31383 1.09195 1.16421 0.79870 0.83454 0.81531 1.90835 1.49865 1.29236 1.69809 1.28101 1.10725 1.05125 0.99695 1.24446 0.94039 0.97559 0.93321 1.70719 1.13496 1.01426 1.26281 1.78875 1.22074 1.21678 1.00881 1.82913 1.27527 1.12306 1.19586 0.91706 0.77546 0.90615 0.92951 0.94382 0.87019 0.91185 0.90651 0.91120 0.90593 0.90911 0.89623 0.76450 0.76850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.29 13.05 55.50 0.72 -22.56 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -7.95 9.68 -14.94 -0.14 -8.10 16 8 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 9 N -0.56 -13.15 5.29 -10.96 -0.06 -13.21 16 10 C 0.44 9.54 7.52 -10.98 -0.08 9.45 16 11 O -0.58 -14.39 13.59 5.55 0.08 -14.31 16 12 C 0.04 0.56 5.05 -4.97 -0.03 0.53 16 13 N -0.49 -7.11 4.74 -223.76 -1.06 -8.18 16 14 C 0.04 0.59 5.55 -1.74 -0.01 0.58 16 15 C -0.12 -1.35 7.07 -24.86 -0.18 -1.53 16 16 C -0.12 -1.08 6.57 -25.37 -0.17 -1.25 16 17 C 0.05 0.48 2.69 -66.64 -0.18 0.30 16 18 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 19 C 0.14 1.47 5.12 -4.05 -0.02 1.45 16 20 N -0.71 -8.16 5.31 -61.47 -0.33 -8.49 16 21 C 0.60 7.73 7.80 -12.63 -0.10 7.64 16 22 O -0.52 -7.93 16.96 5.26 0.09 -7.84 16 23 C -0.30 -3.48 6.81 -35.95 -0.25 -3.72 16 24 C 0.07 0.84 11.55 -17.80 -0.21 0.64 16 25 N -0.26 -3.39 11.54 30.36 0.35 -3.04 16 26 N -0.25 -3.47 12.51 60.35 0.75 -2.72 16 27 S 0.44 5.03 23.05 -107.50 -2.48 2.55 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.39 8.68 7.90 -40.82 -0.32 8.36 16 30 H 0.08 1.04 5.40 -51.93 -0.28 0.76 16 31 H 0.05 0.73 7.98 -51.93 -0.41 0.31 16 32 H 0.04 0.55 8.01 -51.93 -0.42 0.13 16 33 H 0.11 2.03 6.29 -51.93 -0.33 1.70 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 40 H 0.40 4.21 5.01 -40.82 -0.20 4.00 16 41 H 0.22 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -31.90 357.98 -7.81 -39.71 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.81 Total: 10.75 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.45 Total: 6.56 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.38 Total: -58.19 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -2.48 Total: 2.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.90 -7.81 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567359917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.132 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds