Wall clock time and date at job start Tue Mar 31 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47514 * 240.00441 * 3 2 1 5 5 H 1.48507 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47075 * 120.00134 * 3 2 1 7 7 C 1.38943 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00222 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99891 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46908 * 180.02562 * 12 10 9 14 14 C 1.48803 * 111.18581 * 59.04768 * 13 12 10 15 15 C 1.54948 * 103.34764 * 159.50644 * 14 13 12 16 16 C 1.54598 * 102.91774 * 322.68858 * 15 14 13 17 17 C 1.47901 * 110.99602 * 176.38813 * 13 12 10 18 18 H 1.09003 * 109.92042 * 333.69746 * 17 13 12 19 19 C 1.53001 * 109.92099 * 94.79876 * 17 13 12 20 20 N 1.46493 * 109.47245 * 296.78066 * 19 17 13 21 21 C 1.34778 * 120.00231 * 173.58922 * 20 19 17 22 22 O 1.21618 * 119.99930 * 359.97438 * 21 20 19 23 23 C 1.47170 * 119.99816 * 179.97438 * 21 20 19 24 24 C 1.38247 * 128.47242 * 180.02562 * 23 21 20 25 25 N 1.31245 * 111.88944 * 179.97438 * 24 23 21 26 26 N 1.27337 * 120.03339 * 0.02562 * 25 24 23 27 27 S 1.56631 * 109.74528 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00587 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99940 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47409 * 59.99561 * 12 10 9 31 31 H 1.09001 * 109.47001 * 299.99741 * 12 10 9 32 32 H 1.08996 * 110.52189 * 41.07403 * 14 13 12 33 33 H 1.08996 * 110.84169 * 278.08715 * 14 13 12 34 34 H 1.08995 * 110.72061 * 204.33595 * 15 14 13 35 35 H 1.08992 * 110.72309 * 81.04634 * 15 14 13 36 36 H 1.09005 * 110.31049 * 263.04089 * 16 15 14 37 37 H 1.08998 * 110.30877 * 140.87427 * 16 15 14 38 38 H 1.09004 * 109.47223 * 176.77438 * 19 17 13 39 39 H 1.09004 * 109.46676 * 56.77529 * 19 17 13 40 40 H 0.97009 * 119.99833 * 353.57940 * 20 19 17 41 41 H 1.08004 * 124.05733 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0004 14 6 3.0895 -5.9244 1.1902 15 6 3.6161 -7.3767 1.3104 16 6 2.3860 -8.2243 0.9124 17 6 1.4956 -7.2778 0.0861 18 1 0.5333 -7.1468 0.5811 19 6 1.2860 -7.8515 -1.3167 20 7 0.4185 -6.9561 -2.0860 21 6 0.1984 -7.1910 -3.3947 22 8 0.7204 -8.1462 -3.9372 23 6 -0.6735 -6.2917 -4.1673 24 6 -1.0173 -6.3661 -5.5043 25 7 -1.8203 -5.3902 -5.8580 26 7 -2.1854 -4.5226 -5.0004 27 16 -1.5401 -4.8481 -3.6108 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9209 0.8886 32 1 2.5231 -5.6457 2.0787 33 1 3.9129 -5.2291 1.0266 34 1 3.9188 -7.5936 2.3348 35 1 4.4414 -7.5462 0.6190 36 1 1.8552 -8.5621 1.8025 37 1 2.6940 -9.0775 0.3081 38 1 0.8192 -8.8337 -1.2416 39 1 2.2490 -7.9443 -1.8189 40 1 0.0024 -6.1940 -1.6533 41 1 -0.6678 -7.1356 -6.1768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567359917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:54 Heat of formation + Delta-G solvation = -7.041217 kcal Electronic energy + Delta-G solvation = -27192.196808 eV Core-core repulsion = 23234.194220 eV Total energy + Delta-G solvation = -3958.002588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95347 -41.14895 -40.33241 -39.16012 -36.03595 -35.72950 -33.49972 -33.31276 -32.97712 -31.12811 -28.71294 -28.31364 -26.42356 -25.72032 -23.70360 -22.35649 -21.92478 -21.13751 -21.01347 -20.23665 -19.85754 -18.67255 -17.66172 -17.45659 -17.10776 -16.87943 -16.50923 -16.39581 -16.13748 -15.90074 -15.65425 -15.59480 -15.12592 -14.92186 -14.31178 -13.97611 -13.82999 -13.54791 -13.42841 -13.16314 -13.02905 -12.92017 -12.77006 -12.41665 -12.41186 -12.22354 -12.13173 -11.87266 -11.53186 -11.44195 -11.40726 -11.25430 -11.22349 -10.97424 -10.30419 -10.15342 -9.98656 -9.32877 -8.45454 -5.92761 -1.39770 -0.28030 0.36529 0.84790 1.38825 1.42360 1.51487 1.76346 1.88358 2.06028 2.28160 2.77349 2.92721 3.21049 3.28019 3.51194 3.61178 3.72859 3.81211 3.99833 4.17629 4.30245 4.33869 4.41147 4.46644 4.55131 4.65683 4.65767 4.83111 4.97995 5.06149 5.14837 5.21996 5.33843 5.38852 5.43630 5.87657 5.97441 6.12265 6.16410 6.51454 6.62451 6.85111 7.15169 7.57729 8.13967 8.71199 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.004565 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.097496 B = 6132.524044 C = 9301.676465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.047 3.953 13 N -0.510 5.510 14 C 0.038 3.962 15 C -0.118 4.118 16 C -0.112 4.112 17 C 0.048 3.952 18 H 0.081 0.919 19 C 0.137 3.863 20 N -0.709 5.709 21 C 0.606 3.394 22 O -0.547 6.547 23 C -0.302 4.302 24 C 0.078 3.922 25 N -0.274 5.274 26 N -0.285 5.285 27 S 0.478 5.522 28 H 0.277 0.723 29 H 0.397 0.603 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.402 0.598 41 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -17.218 0.560 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.226 3.774 11 O -0.498 6.498 12 C -0.085 4.085 13 N -0.235 5.235 14 C -0.089 4.089 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.061 4.061 18 H 0.099 0.901 19 C 0.014 3.986 20 N -0.362 5.362 21 C 0.390 3.610 22 O -0.426 6.426 23 C -0.444 4.444 24 C -0.089 4.089 25 N -0.136 5.136 26 N -0.266 5.266 27 S 0.613 5.387 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.594 -16.063 -0.145 16.708 hybrid contribution 0.066 0.552 0.268 0.618 sum -4.528 -15.511 0.124 16.159 Atomic orbital electron populations 1.69631 1.06552 1.29246 1.50195 1.25884 0.96460 1.01975 0.96432 0.85117 0.77895 0.77334 0.78803 1.20124 1.19628 1.19751 1.19546 0.92587 0.83965 1.49864 0.90501 1.41876 1.09297 1.04521 1.65098 1.20649 0.88329 0.85842 0.82581 1.90485 1.15648 1.87630 1.56067 1.22067 0.94339 0.89368 1.02739 1.64488 1.17253 1.00368 1.41376 1.23265 0.96943 0.98638 0.90076 1.22479 0.98197 0.92550 1.02339 1.22353 0.95058 0.97478 1.00090 1.22840 0.98360 0.89911 0.94990 0.90148 1.21689 0.94195 0.92678 0.90032 1.46086 1.49733 1.31475 1.08877 1.16479 0.79613 0.83145 0.81806 1.90823 1.51039 1.30402 1.70351 1.28098 1.10951 1.05347 0.99956 1.24819 0.93142 0.97362 0.93619 1.70747 1.14260 1.01902 1.26735 1.78744 1.23315 1.22560 1.01997 1.82696 1.26364 1.11433 1.18193 0.91345 0.76889 0.88481 0.90357 0.94431 0.91578 0.89344 0.91495 0.88670 0.88992 0.88451 0.91414 0.75996 0.74669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.09 13.05 21.66 0.28 -46.81 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.98 41.87 29.55 68.60 2.03 43.89 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.33 -17.87 9.68 84.04 0.81 -17.05 16 8 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -27.14 5.29 -306.99 -1.62 -28.76 16 10 C 0.44 19.20 7.52 87.66 0.66 19.86 16 11 O -0.61 -31.73 13.59 -3.05 -0.04 -31.77 16 12 C 0.05 1.39 5.05 85.56 0.43 1.82 16 13 N -0.51 -14.11 4.74 -861.85 -4.08 -18.20 16 14 C 0.04 1.10 5.55 86.60 0.48 1.58 16 15 C -0.12 -2.31 7.07 31.80 0.22 -2.09 16 16 C -0.11 -1.59 6.57 31.48 0.21 -1.39 16 17 C 0.05 0.86 2.69 45.06 0.12 0.98 16 18 H 0.08 1.17 7.67 -2.39 -0.02 1.15 16 19 C 0.14 2.56 5.12 86.38 0.44 3.00 16 20 N -0.71 -14.57 5.31 -466.64 -2.48 -17.05 16 21 C 0.61 14.50 7.80 86.59 0.68 15.18 16 22 O -0.55 -15.88 16.96 -4.09 -0.07 -15.95 16 23 C -0.30 -6.70 6.81 24.62 0.17 -6.54 16 24 C 0.08 1.69 11.55 84.78 0.98 2.67 16 25 N -0.27 -7.07 11.54 -57.86 -0.67 -7.74 16 26 N -0.28 -7.62 12.51 37.02 0.46 -7.15 16 27 S 0.48 10.32 23.05 -56.49 -1.30 9.02 16 28 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.40 17.62 7.90 -92.71 -0.73 16.89 16 30 H 0.10 2.45 5.40 -2.39 -0.01 2.44 16 31 H 0.08 1.96 7.98 -2.39 -0.02 1.94 16 32 H 0.04 1.06 8.01 -2.39 -0.02 1.04 16 33 H 0.07 2.51 6.29 -2.39 -0.02 2.50 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 1.07 7.69 -2.39 -0.02 1.06 16 38 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.56 8.12 -2.38 -0.02 1.54 16 40 H 0.40 7.46 5.01 -92.70 -0.46 7.00 16 41 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -70.90 357.98 -1.92 -72.81 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.09 Total: 29.58 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.67 Total: 18.14 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -8.11 Total: -125.71 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.11 Total: -47.72 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 10.32 SS G_CDS: -1.30 Total: 9.02 kcal Total: -70.90 -1.92 -72.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567359917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.772 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds