Wall clock time and date at job start Tue Mar 31 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99942 * 2 1 4 4 H 1.48505 * 109.46721 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46996 * 299.99860 * 3 2 1 6 6 H 1.48501 * 109.46960 * 60.00421 * 3 2 1 7 7 C 1.38945 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99894 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00356 * 359.72053 * 7 2 1 10 10 C 1.34778 * 120.00112 * 180.27528 * 9 7 2 11 11 O 1.21293 * 120.00044 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99570 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46787 * 172.97243 * 12 10 9 14 14 C 1.47905 * 111.00028 * 63.67599 * 13 12 10 15 15 C 1.53985 * 107.05988 * 214.15362 * 14 13 12 16 16 C 1.54595 * 105.14398 * 1.22818 * 15 14 13 17 17 C 1.48539 * 111.00163 * 306.28290 * 13 12 10 18 18 H 1.08999 * 110.66603 * 41.28608 * 17 13 12 19 19 C 1.52997 * 110.66400 * 278.15572 * 17 13 12 20 20 N 1.46494 * 109.47286 * 65.87242 * 19 17 13 21 21 C 1.34776 * 120.00121 * 186.88530 * 20 19 17 22 22 O 1.21627 * 120.00224 * 359.97438 * 21 20 19 23 23 C 1.47175 * 120.00382 * 179.97438 * 21 20 19 24 24 C 1.38241 * 128.48024 * 179.70263 * 23 21 20 25 25 N 1.31238 * 111.89124 * 179.84745 * 24 23 21 26 26 N 1.27335 * 120.03660 * 0.49392 * 25 24 23 27 27 S 1.56636 * 109.74044 * 359.71280 * 26 25 24 28 28 H 0.97005 * 119.99931 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99434 * 0.28216 * 9 7 2 30 30 H 1.08996 * 109.47138 * 292.97346 * 12 10 9 31 31 H 1.09004 * 109.47159 * 52.97736 * 12 10 9 32 32 H 1.08998 * 109.91337 * 333.51348 * 14 13 12 33 33 H 1.09003 * 109.91113 * 94.60747 * 14 13 12 34 34 H 1.09004 * 110.30937 * 120.14118 * 15 14 13 35 35 H 1.09006 * 110.31306 * 242.21283 * 15 14 13 36 36 H 1.08993 * 110.72803 * 140.31138 * 16 15 14 37 37 H 1.09001 * 110.72785 * 263.60219 * 16 15 14 38 38 H 1.09009 * 109.46773 * 185.86858 * 19 17 13 39 39 H 1.08998 * 109.47350 * 305.86856 * 19 17 13 40 40 H 0.97003 * 120.00159 * 6.88645 * 20 19 17 41 41 H 1.08005 * 124.05405 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 0.0047 10 6 1.9972 -3.5579 0.0098 11 8 3.2102 -3.5578 0.0102 12 6 1.2436 -4.8629 0.0150 13 7 2.1893 -5.9750 -0.1495 14 6 3.1253 -6.0483 0.9933 15 6 4.4780 -6.5322 0.4390 16 6 4.2560 -6.6954 -1.0822 17 6 3.0359 -5.7801 -1.3544 18 1 3.3476 -4.7392 -1.4412 19 6 2.2936 -6.2300 -2.6143 20 7 1.1426 -5.3530 -2.8424 21 6 0.2588 -5.6411 -3.8183 22 8 0.4170 -6.6290 -4.5099 23 6 -0.8979 -4.7604 -4.0471 24 6 -1.8993 -4.8837 -4.9922 25 7 -2.7770 -3.9118 -4.9048 26 7 -2.6338 -3.0007 -4.0268 27 16 -1.3435 -3.2774 -3.1829 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 0.0047 30 1 0.7143 -4.9730 0.9614 31 1 0.5263 -4.8716 -0.8057 32 1 3.2397 -5.0621 1.4433 33 1 2.7509 -6.7537 1.7352 34 1 5.2528 -5.7899 0.6308 35 1 4.7508 -7.4875 0.8877 36 1 5.1279 -6.3513 -1.6383 37 1 4.0237 -7.7313 -1.3292 38 1 2.9661 -6.1770 -3.4706 39 1 1.9489 -7.2560 -2.4860 40 1 1.0165 -4.5649 -2.2911 41 1 -1.9540 -5.6849 -5.7144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567359918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:57 Heat of formation + Delta-G solvation = 2.345415 kcal Electronic energy + Delta-G solvation = -28008.952662 eV Core-core repulsion = 24051.357109 eV Total energy + Delta-G solvation = -3957.595553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96948 -41.52926 -40.42038 -38.75951 -36.03325 -35.75848 -33.53617 -33.30903 -32.93548 -31.15562 -28.71304 -28.24799 -26.41349 -25.71703 -23.68147 -22.24130 -21.91862 -21.43648 -20.89179 -20.28233 -19.78851 -18.74542 -17.83062 -17.31731 -17.17726 -16.88794 -16.64423 -16.20743 -16.06612 -15.92685 -15.66020 -15.48271 -15.23302 -15.14048 -14.42193 -13.85638 -13.77683 -13.61624 -13.33498 -13.08936 -12.98493 -12.84523 -12.49902 -12.37611 -12.24347 -12.13205 -12.10449 -11.96426 -11.61641 -11.51866 -11.25154 -11.23001 -11.13300 -10.98815 -10.88528 -10.24672 -9.94946 -9.14431 -8.44549 -5.92130 -1.40367 -0.26703 0.37060 0.84485 1.34315 1.43939 1.54273 1.78385 1.80957 1.96941 2.28664 2.92547 2.97856 3.18550 3.22178 3.47443 3.61228 3.78176 3.80652 4.05174 4.25333 4.37109 4.41024 4.48784 4.53958 4.56181 4.62789 4.75569 4.83881 5.00117 5.11167 5.15500 5.18334 5.32875 5.44825 5.45270 5.88190 5.90646 6.04571 6.09906 6.50719 6.58166 6.78724 7.13560 7.54196 8.07255 8.70197 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007233 B = 0.006103 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3870.200194 B = 4586.705353 C = 7853.498015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.325 4.325 8 H 0.081 0.919 9 N -0.561 5.561 10 C 0.403 3.597 11 O -0.607 6.607 12 C 0.027 3.973 13 N -0.481 5.481 14 C 0.032 3.968 15 C -0.116 4.116 16 C -0.102 4.102 17 C 0.027 3.973 18 H 0.075 0.925 19 C 0.138 3.862 20 N -0.715 5.715 21 C 0.607 3.393 22 O -0.542 6.542 23 C -0.306 4.306 24 C 0.083 3.917 25 N -0.270 5.270 26 N -0.280 5.280 27 S 0.468 5.532 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.400 0.600 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -11.708 -3.487 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.204 4.204 3 Si 0.803 3.197 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.455 4.455 8 H 0.099 0.901 9 N -0.198 5.198 10 C 0.190 3.810 11 O -0.495 6.495 12 C -0.106 4.106 13 N -0.204 5.204 14 C -0.096 4.096 15 C -0.154 4.154 16 C -0.140 4.140 17 C -0.082 4.082 18 H 0.093 0.907 19 C 0.015 3.985 20 N -0.369 5.369 21 C 0.391 3.609 22 O -0.421 6.421 23 C -0.447 4.447 24 C -0.085 4.085 25 N -0.133 5.133 26 N -0.261 5.261 27 S 0.603 5.397 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.238 0.762 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.005 -11.083 -3.352 11.579 hybrid contribution 0.529 1.284 -0.147 1.397 sum 0.524 -9.799 -3.499 10.418 Atomic orbital electron populations 1.69637 1.06445 1.29107 1.49671 1.25819 0.96335 1.01787 0.96425 0.85081 0.78310 0.78250 0.78047 1.19895 1.20066 1.20162 1.19602 0.92636 0.83740 1.49543 0.90149 1.42094 1.09347 1.04789 1.63527 1.21709 0.88903 0.86659 0.83725 1.90473 1.15041 1.87397 1.56559 1.22434 0.96418 0.86908 1.04808 1.65196 1.15651 1.36357 1.03162 1.22879 0.92464 1.00463 0.93749 1.22213 0.96101 1.01402 0.95695 1.22335 0.95835 0.99785 0.96056 1.23444 0.93581 1.01481 0.89659 0.90706 1.21549 0.85905 0.94375 0.96703 1.46341 1.26453 1.29417 1.34658 1.16480 0.80532 0.83513 0.80381 1.90813 1.75589 1.27811 1.47858 1.28119 1.05054 1.04995 1.06566 1.24861 0.87234 0.97971 0.98428 1.70758 1.26401 1.00884 1.15292 1.78775 1.16710 1.22021 1.08631 1.83414 1.15140 1.10760 1.30348 0.91361 0.77004 0.87046 0.88545 0.94379 0.89637 0.92965 0.89234 0.90501 0.89009 0.90113 0.89335 0.76225 0.74198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.30 13.05 21.66 0.28 -44.01 16 2 C 0.00 -0.11 5.50 84.92 0.47 0.35 16 3 Si 0.98 40.01 29.55 68.60 2.03 42.04 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.33 -16.31 9.68 84.04 0.81 -15.50 16 8 H 0.08 4.36 7.16 -2.91 -0.02 4.34 16 9 N -0.56 -24.52 5.29 -306.98 -1.62 -26.14 16 10 C 0.40 15.95 6.34 87.66 0.56 16.50 16 11 O -0.61 -27.43 11.37 -3.07 -0.03 -27.47 16 12 C 0.03 0.81 5.32 85.56 0.46 1.27 16 13 N -0.48 -13.39 5.23 -862.77 -4.51 -17.90 16 14 C 0.03 0.90 6.01 86.44 0.52 1.41 16 15 C -0.12 -2.78 6.93 31.47 0.22 -2.56 16 16 C -0.10 -2.29 6.50 31.80 0.21 -2.08 16 17 C 0.03 0.74 2.19 45.26 0.10 0.84 16 18 H 0.08 2.67 5.05 -2.39 -0.01 2.66 16 19 C 0.14 3.44 5.41 86.38 0.47 3.91 16 20 N -0.72 -19.11 4.68 -466.63 -2.18 -21.29 16 21 C 0.61 16.59 7.80 86.59 0.68 17.26 16 22 O -0.54 -16.73 16.96 -4.12 -0.07 -16.80 16 23 C -0.31 -7.75 6.81 24.62 0.17 -7.59 16 24 C 0.08 1.92 11.55 84.78 0.98 2.90 16 25 N -0.27 -7.45 11.54 -57.87 -0.67 -8.12 16 26 N -0.28 -8.35 12.51 37.02 0.46 -7.88 16 27 S 0.47 12.65 23.05 -56.49 -1.30 11.35 16 28 H 0.28 12.87 8.31 -92.70 -0.77 12.10 16 29 H 0.40 16.47 7.90 -92.71 -0.73 15.74 16 30 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.10 2.61 5.30 -2.38 -0.01 2.60 16 32 H 0.04 1.33 5.79 -2.39 -0.01 1.32 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 40 H 0.40 11.20 4.91 -92.71 -0.46 10.75 16 41 H 0.24 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -59.92 352.06 -2.07 -61.99 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.08 Total: 37.51 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 5.62 Total: 16.73 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -8.24 Total: -125.35 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.10 Total: -44.27 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 12.65 SS G_CDS: -1.30 Total: 11.35 kcal Total: -59.92 -2.07 -61.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567359918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.334 kcal (2) G-P(sol) polarization free energy of solvation -59.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds