Wall clock time and date at job start Tue Mar 31 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47414 * 270.00367 * 3 2 1 5 5 H 1.48498 * 109.46906 * 30.00731 * 3 2 1 6 6 H 1.48498 * 109.46763 * 150.00211 * 3 2 1 7 7 C 1.38797 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00019 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47370 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99568 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00272 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99674 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46664 * 179.97438 * 14 13 11 16 16 C 1.53785 * 113.61302 * 174.99604 * 15 14 13 17 17 C 1.53780 * 87.07999 * 139.98460 * 16 15 14 18 18 N 1.46500 * 113.61347 * 89.11521 * 17 16 15 19 19 C 1.34779 * 119.99708 * 156.53093 * 18 17 16 20 20 O 1.21552 * 120.00117 * 359.97438 * 19 18 17 21 21 C 1.47870 * 120.00058 * 180.02562 * 19 18 17 22 22 N 1.34552 * 126.04709 * 359.97438 * 21 19 18 23 23 C 1.30868 * 107.26947 * 180.02562 * 22 21 19 24 24 N 1.34584 * 107.62357 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.74160 * 179.97438 * 24 23 22 26 26 N 1.28842 * 108.50460 * 359.97438 * 24 23 22 27 27 C 1.53788 * 87.17454 * 334.52586 * 17 16 15 28 28 H 0.97005 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47422 * 60.00024 * 10 9 7 30 30 H 1.09001 * 109.47052 * 299.99828 * 10 9 7 31 31 H 0.97003 * 120.00240 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.47281 * 60.00107 * 14 13 11 33 33 H 1.08993 * 109.47473 * 299.99708 * 14 13 11 34 34 H 1.09002 * 112.85066 * 43.80512 * 15 14 13 35 35 H 1.08998 * 113.61017 * 25.44075 * 16 15 14 36 36 H 1.08991 * 113.69003 * 254.54808 * 16 15 14 37 37 H 1.09001 * 113.61470 * 219.94000 * 17 16 15 38 38 H 0.96991 * 120.00170 * 336.53220 * 18 17 16 39 39 H 1.08002 * 126.18380 * 180.26165 * 23 22 21 40 40 H 1.08998 * 113.61475 * 140.01865 * 27 17 16 41 41 H 1.08992 * 113.61647 * 270.92863 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 2.3301 -7.7151 -0.0003 15 6 3.5022 -8.6986 -0.0014 16 6 3.0719 -10.1699 0.1214 17 6 4.1650 -10.4939 -0.9106 18 7 5.4726 -10.7735 -0.3122 19 6 6.3783 -11.5101 -0.9858 20 8 6.1098 -11.9429 -2.0896 21 6 7.6980 -11.7929 -0.3817 22 7 8.1213 -11.3774 0.8260 23 6 9.3370 -11.8333 0.9895 24 7 9.6636 -12.5286 -0.1156 25 1 10.5079 -12.9796 -0.2724 26 7 8.6659 -12.4941 -0.9301 27 6 4.0135 -9.0480 -1.4120 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1243 -3.7314 -0.8905 31 1 3.8008 -6.1836 -0.0014 32 1 1.7212 -7.8751 -0.8900 33 1 1.7219 -7.8753 0.8899 34 1 4.2930 -8.4155 0.6933 35 1 2.0610 -10.3606 -0.2388 36 1 3.2589 -10.6001 1.1052 37 1 3.8655 -11.2436 -1.6430 38 1 5.6867 -10.4285 0.5686 39 1 9.9634 -11.6825 1.8564 40 1 4.9608 -8.5720 -1.6649 41 1 3.2595 -8.9326 -2.1906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571743201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:42 Heat of formation + Delta-G solvation = 35.506244 kcal Electronic energy + Delta-G solvation = -24997.068017 eV Core-core repulsion = 21040.910425 eV Total energy + Delta-G solvation = -3956.157592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.05397 -40.62310 -39.21439 -38.36964 -34.74085 -34.18996 -33.09539 -32.41025 -31.95962 -29.86150 -27.40918 -26.06746 -25.51674 -25.21291 -23.51468 -22.61897 -21.20817 -20.40090 -19.60732 -19.49332 -17.84479 -17.57919 -16.93638 -16.67491 -16.23883 -16.06764 -15.62371 -15.31804 -15.14355 -14.78867 -14.73540 -14.19279 -14.04260 -13.87566 -13.26483 -12.90940 -12.80165 -12.77132 -12.55619 -12.33454 -11.70487 -11.33820 -11.26823 -11.14691 -11.05003 -11.00653 -10.99288 -10.73713 -10.67995 -10.55793 -10.35179 -9.79467 -9.46813 -9.34092 -9.05263 -8.81939 -8.21079 -6.47666 -6.19866 -3.90156 0.82630 1.50035 1.90546 2.59825 2.87046 3.07028 3.14747 3.23597 3.29340 3.33817 3.51282 3.73457 4.05221 4.11229 4.22157 4.22234 4.29327 4.49308 4.52985 5.02400 5.15217 5.17580 5.28381 5.34894 5.39544 5.44631 5.46864 5.58062 5.62057 5.67677 5.77031 5.83320 5.93381 5.95681 6.06450 6.17032 6.21651 6.67906 6.94811 7.38618 7.61324 7.71944 7.75991 8.37023 8.66293 9.25424 10.87553 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.001678 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.938217 B =16678.742199 C =17760.951764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.131 3.869 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.119 3.881 18 N -0.691 5.691 19 C 0.618 3.382 20 O -0.514 6.514 21 C 0.145 3.855 22 N -0.485 5.485 23 C 0.202 3.798 24 N -0.400 5.400 25 H 0.454 0.546 26 N -0.247 5.247 27 C -0.145 4.145 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.897 -27.645 3.449 34.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.007 3.993 15 C -0.143 4.143 16 C -0.172 4.172 17 C 0.014 3.986 18 N -0.343 5.343 19 C 0.400 3.600 20 O -0.385 6.385 21 C -0.135 4.135 22 N -0.211 5.211 23 C -0.096 4.096 24 N -0.123 5.123 25 H 0.301 0.699 26 N -0.086 5.086 27 C -0.184 4.184 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.092 0.908 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.101 -28.217 2.242 33.599 hybrid contribution 3.508 1.303 0.668 3.801 sum 21.609 -26.914 2.910 34.638 Atomic orbital electron populations 1.70020 1.05940 1.27421 1.46900 1.24991 0.95027 0.99012 0.94571 0.86171 0.79403 0.81600 0.78336 1.20287 1.20759 1.19716 1.22873 0.94909 0.91694 1.58883 0.90947 1.85392 1.05009 0.96308 1.96709 1.23532 1.06509 0.95516 1.04866 1.20298 0.86540 0.86316 0.75180 1.90700 1.15396 1.85646 1.47604 1.45989 1.09866 1.05526 1.77833 1.21270 0.95220 0.80372 1.02405 1.22936 0.98337 0.94782 0.98234 1.23293 0.99189 0.94933 0.99757 1.21932 0.81899 0.98036 0.96750 1.45329 1.14373 1.52992 1.21580 1.16227 0.80912 0.78620 0.84247 1.90860 1.77585 1.51239 1.18860 1.23791 0.97251 1.01304 0.91165 1.71301 1.09839 1.23758 1.16235 1.26656 0.94260 0.94580 0.94128 1.45288 1.15170 1.39083 1.12740 0.69886 1.74384 0.96384 1.19319 1.18559 1.23589 1.02449 0.95454 0.96883 0.92201 0.89288 0.89276 0.76892 0.91368 0.91478 0.88493 0.87872 0.90295 0.87466 0.75223 0.75178 0.90758 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.90 7.85 -10.99 -0.09 9.81 16 12 O -0.52 -11.85 15.86 5.56 0.09 -11.77 16 13 N -0.74 -9.59 5.56 -60.29 -0.33 -9.93 16 14 C 0.13 1.42 5.51 -4.04 -0.02 1.40 16 15 C -0.12 -0.91 3.65 -89.66 -0.33 -1.23 16 16 C -0.13 -0.82 7.38 -25.92 -0.19 -1.01 16 17 C 0.12 0.90 4.30 -67.12 -0.29 0.61 16 18 N -0.69 -5.45 5.26 -53.95 -0.28 -5.73 16 19 C 0.62 6.60 7.83 -12.32 -0.10 6.51 16 20 O -0.51 -7.21 16.70 5.32 0.09 -7.12 16 21 C 0.15 1.38 7.96 -156.35 -1.24 0.14 16 22 N -0.48 -3.46 11.09 -12.36 -0.14 -3.60 16 23 C 0.20 0.62 13.14 -90.48 -1.19 -0.57 16 24 N -0.40 -1.41 6.93 29.56 0.20 -1.20 16 25 H 0.45 -0.37 8.96 -190.21 -1.71 -2.08 16 26 N -0.25 -2.16 12.30 32.07 0.39 -1.76 16 27 C -0.15 -1.13 7.45 -25.77 -0.19 -1.32 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 32 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.92 7.50 -51.93 -0.39 0.53 16 38 H 0.41 2.64 8.41 -40.82 -0.34 2.29 16 39 H 0.23 -0.49 8.06 -52.49 -0.42 -0.91 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.78 7.90 -51.93 -0.41 0.37 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -40.75 374.81 -10.58 -51.32 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.53 Total: -1.32 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.22 Total: -1.59 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.58 Total: -47.77 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.18 Total: -18.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.75 -10.58 -51.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571743201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.831 kcal (2) G-P(sol) polarization free energy of solvation -40.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds