Wall clock time and date at job start Tue Mar 31 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47414 * 270.00367 * 3 2 1 5 5 H 1.48498 * 109.46906 * 30.00731 * 3 2 1 6 6 H 1.48498 * 109.46763 * 150.00211 * 3 2 1 7 7 C 1.38797 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00019 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00056 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47370 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99568 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00272 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99674 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46664 * 179.97438 * 14 13 11 16 16 C 1.53785 * 113.61302 * 174.99604 * 15 14 13 17 17 C 1.53780 * 87.07999 * 139.98460 * 16 15 14 18 18 N 1.46500 * 113.61347 * 89.11521 * 17 16 15 19 19 C 1.34779 * 119.99708 * 156.53093 * 18 17 16 20 20 O 1.21552 * 120.00117 * 359.97438 * 19 18 17 21 21 C 1.47870 * 120.00058 * 180.02562 * 19 18 17 22 22 N 1.34552 * 126.04709 * 359.97438 * 21 19 18 23 23 C 1.30868 * 107.26947 * 180.02562 * 22 21 19 24 24 N 1.34584 * 107.62357 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.74160 * 179.97438 * 24 23 22 26 26 N 1.28842 * 108.50460 * 359.97438 * 24 23 22 27 27 C 1.53788 * 87.17454 * 334.52586 * 17 16 15 28 28 H 0.97005 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47422 * 60.00024 * 10 9 7 30 30 H 1.09001 * 109.47052 * 299.99828 * 10 9 7 31 31 H 0.97003 * 120.00240 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.47281 * 60.00107 * 14 13 11 33 33 H 1.08993 * 109.47473 * 299.99708 * 14 13 11 34 34 H 1.09002 * 112.85066 * 43.80512 * 15 14 13 35 35 H 1.08998 * 113.61017 * 25.44075 * 16 15 14 36 36 H 1.08991 * 113.69003 * 254.54808 * 16 15 14 37 37 H 1.09001 * 113.61470 * 219.94000 * 17 16 15 38 38 H 0.96991 * 120.00170 * 336.53220 * 18 17 16 39 39 H 1.08002 * 126.18380 * 180.26165 * 23 22 21 40 40 H 1.08998 * 113.61475 * 140.01865 * 27 17 16 41 41 H 1.08992 * 113.61647 * 270.92863 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 2.3301 -7.7151 -0.0003 15 6 3.5022 -8.6986 -0.0014 16 6 3.0719 -10.1699 0.1214 17 6 4.1650 -10.4939 -0.9106 18 7 5.4726 -10.7735 -0.3122 19 6 6.3783 -11.5101 -0.9858 20 8 6.1098 -11.9429 -2.0896 21 6 7.6980 -11.7929 -0.3817 22 7 8.1213 -11.3774 0.8260 23 6 9.3370 -11.8333 0.9895 24 7 9.6636 -12.5286 -0.1156 25 1 10.5079 -12.9796 -0.2724 26 7 8.6659 -12.4941 -0.9301 27 6 4.0135 -9.0480 -1.4120 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1243 -3.7314 -0.8905 31 1 3.8008 -6.1836 -0.0014 32 1 1.7212 -7.8751 -0.8900 33 1 1.7219 -7.8753 0.8899 34 1 4.2930 -8.4155 0.6933 35 1 2.0610 -10.3606 -0.2388 36 1 3.2589 -10.6001 1.1052 37 1 3.8655 -11.2436 -1.6430 38 1 5.6867 -10.4285 0.5686 39 1 9.9634 -11.6825 1.8564 40 1 4.9608 -8.5720 -1.6649 41 1 3.2595 -8.9326 -2.1906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571743201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:42 Heat of formation + Delta-G solvation = 3.360915 kcal Electronic energy + Delta-G solvation = -24998.461943 eV Core-core repulsion = 21040.910425 eV Total energy + Delta-G solvation = -3957.551518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47524 -41.36357 -40.48288 -39.29086 -35.79046 -34.83688 -34.57177 -33.85752 -32.42233 -31.29332 -28.47395 -27.60212 -26.66526 -25.95676 -23.86510 -23.38128 -21.93211 -21.65655 -20.32228 -20.00588 -19.71580 -18.20428 -17.75962 -17.44227 -17.36478 -17.08562 -16.86732 -16.66100 -16.14521 -15.86573 -15.77292 -15.46904 -15.01438 -14.93770 -14.55848 -14.47116 -13.90496 -13.49985 -13.36341 -13.21099 -13.15208 -12.91068 -12.83555 -12.61068 -11.99231 -11.77634 -11.76062 -11.64785 -11.60251 -11.47247 -11.25127 -11.13294 -10.86728 -10.83953 -10.25846 -10.15529 -10.01916 -8.65116 -8.33464 -6.11394 0.26239 1.12845 1.28769 1.43255 1.48573 1.49246 1.59081 1.65823 2.19486 2.20918 2.27805 2.35472 3.00574 3.06804 3.33494 3.48465 3.58579 3.60600 3.83618 3.86647 4.04435 4.06325 4.31888 4.35307 4.53456 4.59635 4.68919 4.82322 4.85409 4.88906 4.90483 5.07138 5.13286 5.18851 5.22961 5.42970 5.48508 5.60181 5.92154 6.21003 6.33239 6.55905 6.91621 7.07058 7.07781 7.29613 8.75739 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.001678 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.938217 B =16678.742199 C =17760.951764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.130 3.870 15 C -0.110 4.110 16 C -0.120 4.120 17 C 0.116 3.884 18 N -0.675 5.675 19 C 0.613 3.387 20 O -0.560 6.560 21 C 0.121 3.879 22 N -0.508 5.508 23 C 0.223 3.777 24 N -0.384 5.384 25 H 0.472 0.528 26 N -0.282 5.282 27 C -0.145 4.145 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.415 0.585 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.421 0.579 39 H 0.285 0.715 40 H 0.069 0.931 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.177 -27.880 4.962 37.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.006 3.994 15 C -0.129 4.129 16 C -0.158 4.158 17 C 0.011 3.989 18 N -0.327 5.327 19 C 0.396 3.604 20 O -0.436 6.436 21 C -0.159 4.159 22 N -0.235 5.235 23 C -0.074 4.074 24 N -0.109 5.109 25 H 0.323 0.677 26 N -0.123 5.123 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.259 0.741 39 H 0.300 0.700 40 H 0.088 0.912 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.460 -28.489 3.786 35.867 hybrid contribution 2.617 1.223 0.238 2.898 sum 24.076 -27.265 4.023 36.596 Atomic orbital electron populations 1.70186 1.07967 1.28584 1.48018 1.26132 0.95974 1.03324 0.93766 0.84951 0.78225 0.76030 0.78755 1.19395 1.20278 1.18142 1.23212 0.95353 0.92039 1.58831 0.89917 1.85572 1.10688 0.99254 1.97045 1.23382 1.03477 0.94565 1.06720 1.20051 0.86266 0.86731 0.75218 1.90689 1.17471 1.86150 1.50363 1.45760 1.10183 1.05253 1.75239 1.21435 0.96613 0.79459 1.01845 1.22879 0.97318 0.94390 0.98266 1.23258 0.98899 0.93583 1.00084 1.21927 0.82232 0.97529 0.97232 1.45246 1.13941 1.51930 1.21582 1.16540 0.81746 0.78266 0.83828 1.90821 1.78672 1.53264 1.20839 1.23573 0.97090 1.02828 0.92399 1.71269 1.11812 1.25019 1.15417 1.27651 0.93285 0.91945 0.94535 1.45280 1.14877 1.38600 1.12188 0.67717 1.74280 0.97544 1.20058 1.20430 1.23581 1.02154 0.95501 0.97140 0.92009 0.87186 0.87396 0.74802 0.92239 0.91874 0.86732 0.87273 0.88721 0.88763 0.74124 0.69997 0.91200 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 7 C -0.55 -31.33 9.50 67.95 0.65 -30.69 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.44 7.85 87.66 0.69 20.13 16 12 O -0.57 -26.34 15.86 -3.03 -0.05 -26.39 16 13 N -0.71 -17.09 5.56 -463.06 -2.57 -19.67 16 14 C 0.13 2.61 5.51 86.38 0.48 3.09 16 15 C -0.11 -1.36 3.65 -10.17 -0.04 -1.40 16 16 C -0.12 -1.24 7.38 31.12 0.23 -1.01 16 17 C 0.12 1.66 4.30 45.52 0.20 1.85 16 18 N -0.68 -10.11 5.26 -442.87 -2.33 -12.44 16 19 C 0.61 13.28 7.83 86.79 0.68 13.96 16 20 O -0.56 -16.49 16.70 -3.88 -0.06 -16.55 16 21 C 0.12 2.24 7.96 137.13 1.09 3.33 16 22 N -0.51 -6.27 11.09 -193.03 -2.14 -8.41 16 23 C 0.22 0.67 13.14 180.30 2.37 3.04 16 24 N -0.38 -1.91 6.93 -60.38 -0.42 -2.33 16 25 H 0.47 -1.88 8.96 -219.80 -1.97 -3.85 16 26 N -0.28 -4.78 12.30 -52.44 -0.64 -5.43 16 27 C -0.15 -2.09 7.45 31.22 0.23 -1.86 16 28 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.42 7.21 8.47 -92.71 -0.79 6.42 16 32 H 0.06 1.35 7.85 -2.39 -0.02 1.33 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 1.66 7.50 -2.39 -0.02 1.64 16 38 H 0.42 4.68 8.41 -92.71 -0.78 3.90 16 39 H 0.28 -2.65 8.06 -2.91 -0.02 -2.68 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.45 7.90 -2.39 -0.02 1.43 16 Total: -1.00 -93.44 374.81 -2.02 -95.46 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.42 Total: 8.73 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 7.47 Total: 6.94 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -7.82 Total: -104.20 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.11 Total: -42.94 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -93.44 -2.02 -95.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571743201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.823 kcal (2) G-P(sol) polarization free energy of solvation -93.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds