Wall clock time and date at job start Tue Mar 31 2020 23:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99442 * 2 1 4 4 C 1.54330 * 109.99122 * 238.96840 * 2 1 3 5 5 C 1.55155 * 103.01848 * 218.65961 * 4 2 1 6 6 H 1.08998 * 111.00815 * 277.22932 * 5 4 2 7 7 N 1.46501 * 111.03561 * 153.39428 * 5 4 2 8 8 C 1.34778 * 120.00275 * 161.33178 * 7 5 4 9 9 O 1.21617 * 119.99632 * 0.02562 * 8 7 5 10 10 C 1.47236 * 120.00283 * 180.02562 * 8 7 5 11 11 C 1.37005 * 127.18469 * 179.68561 * 10 8 7 12 12 N 1.33328 * 106.36649 * 179.84423 * 11 10 8 13 13 N 1.28513 * 109.43714 * 0.43322 * 12 11 10 14 14 N 1.28711 * 110.63953 * 359.72224 * 13 12 11 15 15 H 0.97006 * 126.03351 * 180.02562 * 14 13 12 16 16 C 1.54912 * 101.58286 * 35.30933 * 5 4 2 17 17 N 1.47013 * 109.88485 * 121.09510 * 2 1 3 18 18 C 1.34781 * 125.65407 * 298.40099 * 17 2 1 19 19 O 1.21276 * 119.99264 * 359.71002 * 18 17 2 20 20 C 1.50692 * 120.00195 * 179.71328 * 18 17 2 21 21 S 1.81006 * 109.47105 * 179.97438 * 20 18 17 22 22 C 1.76200 * 99.99914 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00471 * 359.97438 * 22 21 20 24 24 C 1.38798 * 119.99691 * 180.02562 * 22 21 20 25 25 N 1.31634 * 120.00298 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99999 * 179.72513 * 24 22 21 27 27 H 1.48494 * 109.47228 * 180.27676 * 26 24 22 28 28 H 1.48506 * 109.47130 * 300.27864 * 26 24 22 29 29 H 1.48493 * 109.46907 * 60.27452 * 26 24 22 30 30 H 1.09003 * 109.47495 * 300.35085 * 1 2 3 31 31 H 1.08998 * 109.47439 * 60.35668 * 1 2 3 32 32 H 1.09001 * 109.46803 * 180.35658 * 1 2 3 33 33 H 1.09003 * 110.85376 * 100.19601 * 4 2 1 34 34 H 1.08999 * 110.51755 * 336.97518 * 4 2 1 35 35 H 0.97003 * 120.00160 * 341.33291 * 7 5 4 36 36 H 1.07997 * 126.81942 * 359.97438 * 11 10 8 37 37 H 1.09000 * 110.36590 * 204.14977 * 16 5 4 38 38 H 1.09000 * 110.45963 * 81.87092 * 16 5 4 39 39 H 1.09005 * 109.47474 * 60.00137 * 20 18 17 40 40 H 1.08998 * 109.47483 * 300.00158 * 20 18 17 41 41 H 0.97005 * 119.99723 * 359.71970 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7476 -1.2427 5 6 3.2864 -1.5181 -0.6916 6 1 4.1670 -0.8766 -0.6580 7 7 3.5485 -2.7240 -1.4812 8 6 4.7554 -3.3207 -1.4197 9 8 5.6268 -2.8583 -0.7084 10 6 5.0190 -4.5322 -2.2138 11 6 6.1850 -5.2496 -2.2675 12 7 5.9652 -6.2614 -3.1075 13 7 4.7640 -6.1895 -3.5585 14 7 4.1513 -5.1743 -3.0578 15 1 3.2367 -4.9106 -3.2448 16 6 2.8100 -1.8825 0.7367 17 7 2.0300 -0.7140 1.1838 18 6 1.8074 -0.3621 2.4657 19 8 1.1475 0.6236 2.7180 20 6 2.3784 -1.1935 3.5854 21 16 1.9088 -0.4678 5.1757 22 6 2.6867 -1.6061 6.2730 23 1 3.2440 -2.4425 5.8776 24 6 2.5823 -1.4284 7.6456 25 7 1.9019 -0.4099 8.1276 26 14 3.4005 -2.6394 8.8090 27 1 3.1361 -2.2332 10.2126 28 1 2.8508 -3.9990 8.5752 29 1 4.8650 -2.6489 8.5639 30 1 -0.3634 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0064 33 1 2.3597 -0.0448 -2.0192 34 1 1.3053 -1.4404 -1.6198 35 1 2.8534 -3.0930 -2.0483 36 1 7.0998 -5.0387 -1.7337 37 1 3.6657 -2.0411 1.3931 38 1 2.1807 -2.7721 0.7131 39 1 3.4652 -1.2160 3.5035 40 1 1.9880 -2.2090 3.5195 41 1 1.4767 0.2188 7.5235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572386762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:11 Heat of formation + Delta-G solvation = 26.687786 kcal Electronic energy + Delta-G solvation = -26288.700664 eV Core-core repulsion = 22332.160675 eV Total energy + Delta-G solvation = -3956.539989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.93194 -40.78594 -39.65034 -37.58365 -35.13649 -33.99486 -32.54768 -32.39433 -32.11110 -30.21247 -28.91842 -26.22835 -25.26691 -24.85959 -23.69190 -22.68756 -21.74355 -21.46806 -19.97660 -19.11238 -18.23966 -17.44266 -17.20797 -16.92146 -16.89757 -15.95468 -15.41829 -15.17938 -14.88578 -14.77182 -14.61814 -14.12779 -13.85941 -13.81752 -13.37189 -13.24726 -12.81768 -12.76615 -12.43906 -12.34204 -12.19821 -11.91209 -11.86162 -11.80853 -11.37421 -11.35047 -11.23981 -10.92668 -10.83977 -10.18078 -10.16955 -9.95564 -9.60140 -9.51824 -9.03181 -8.73867 -8.25679 -6.70422 -6.63999 -4.02406 0.26784 1.72668 1.78781 2.12186 2.43858 2.72289 2.87351 3.30678 3.37426 3.40606 3.57326 3.67218 3.83740 4.06912 4.11759 4.23412 4.38168 4.39831 4.56236 4.67470 4.78330 4.86676 5.12033 5.16861 5.20613 5.25258 5.33197 5.37111 5.39684 5.42934 5.46233 5.69384 5.73166 5.83498 5.93844 5.97145 6.07808 6.31902 6.58078 7.31399 7.43661 7.66961 7.90297 8.35858 8.48224 9.24954 10.79856 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.002694 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.692522 B =10389.651149 C =12537.702656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.134 3.866 6 H 0.114 0.886 7 N -0.716 5.716 8 C 0.597 3.403 9 O -0.500 6.500 10 C -0.069 4.069 11 C 0.039 3.961 12 N -0.268 5.268 13 N -0.043 5.043 14 N -0.375 5.375 15 H 0.450 0.550 16 C 0.091 3.909 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.510 6.510 20 C -0.126 4.126 21 S -0.115 6.115 22 C -0.607 4.607 23 H 0.066 0.934 24 C 0.036 3.964 25 N -0.883 5.883 26 Si 1.084 2.916 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.398 0.602 36 H 0.207 0.793 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -6.487 -27.485 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.029 3.971 6 H 0.131 0.869 7 N -0.368 5.368 8 C 0.381 3.619 9 O -0.371 6.371 10 C -0.203 4.203 11 C -0.120 4.120 12 N -0.133 5.133 13 N -0.025 5.025 14 N -0.103 5.103 15 H 0.297 0.703 16 C -0.034 4.034 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.383 6.383 20 C -0.277 4.277 21 S 0.111 5.889 22 C -0.755 4.755 23 H 0.084 0.916 24 C -0.175 4.175 25 N -0.518 5.518 26 Si 0.909 3.091 27 H -0.203 1.203 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.232 0.768 36 H 0.224 0.776 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.495 -6.185 -25.771 26.544 hybrid contribution -0.285 -0.213 -1.667 1.704 sum 1.209 -6.398 -27.437 28.199 Atomic orbital electron populations 1.22148 0.94287 1.02361 1.03332 1.21455 0.95083 0.96628 0.83397 0.90106 1.23045 0.96375 0.99875 0.97819 1.22199 0.99434 0.85433 0.90016 0.86858 1.45727 1.13906 1.29442 1.47712 1.16763 0.82752 0.81411 0.81014 1.90947 1.44498 1.62946 1.38716 1.22327 0.93571 1.01158 1.03229 1.24013 0.98755 0.91153 0.98102 1.75060 1.06805 1.20320 1.11097 1.78264 1.02278 1.04587 1.17391 1.45604 1.15223 1.19477 1.29946 0.70311 1.22624 0.96265 0.89325 0.95232 1.48469 1.54035 1.28413 1.04969 1.19985 0.79663 0.85061 0.81314 1.90702 1.38550 1.26672 1.82410 1.23315 1.03911 1.02292 0.98188 1.84793 1.70972 1.39322 0.93790 1.23689 1.41731 1.15020 0.95062 0.91610 1.26059 0.95966 0.99507 0.95939 1.70809 1.29446 1.12608 1.38891 0.83336 0.75719 0.74341 0.75664 1.20253 1.21134 1.21062 0.90532 0.91769 0.92567 0.88946 0.89740 0.76793 0.77625 0.89381 0.91102 0.88918 0.89134 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.11 37.16 0.34 -1.27 16 2 C 0.14 1.34 3.45 -66.95 -0.23 1.11 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.69 6.11 -24.89 -0.15 -0.84 16 5 C 0.13 0.91 3.32 -65.78 -0.22 0.69 16 6 H 0.11 0.93 7.73 -51.93 -0.40 0.53 16 7 N -0.72 -3.26 5.23 -52.86 -0.28 -3.53 16 8 C 0.60 4.37 7.81 -12.60 -0.10 4.27 16 9 O -0.50 -5.69 16.67 5.26 0.09 -5.60 16 10 C -0.07 -0.44 7.17 -82.34 -0.59 -1.03 16 11 C 0.04 0.30 11.87 -17.35 -0.21 0.10 16 12 N -0.27 -2.52 12.35 30.47 0.38 -2.15 16 13 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 14 N -0.38 -1.67 6.97 33.31 0.23 -1.44 16 15 H 0.45 0.05 8.32 -190.33 -1.58 -1.53 16 16 C 0.09 0.89 6.38 -2.52 -0.02 0.88 16 17 N -0.62 -8.03 3.06 -163.01 -0.50 -8.53 16 18 C 0.55 10.10 7.66 -10.99 -0.08 10.02 16 19 O -0.51 -11.11 14.91 5.56 0.08 -11.03 16 20 C -0.13 -2.57 5.16 36.00 0.19 -2.38 16 21 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16 22 C -0.61 -17.53 9.50 30.94 0.29 -17.24 16 23 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 24 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 25 N -0.88 -27.49 13.67 55.49 0.76 -26.73 16 26 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.08 1.04 6.89 -51.93 -0.36 0.68 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.28 7.70 -51.93 -0.40 -0.12 16 35 H 0.40 0.39 7.78 -40.82 -0.32 0.07 16 36 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.09 1.01 7.48 -51.93 -0.39 0.62 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.80 7.85 -51.91 -0.41 1.39 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.28 8.80 7.13 -40.82 -0.29 8.51 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -38.97 365.64 -7.30 -46.27 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.31 Total: -3.23 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.87 Total: -4.74 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 1.40 Total: -41.91 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.17 Total: -16.63 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.97 -7.30 -46.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.962 kcal (2) G-P(sol) polarization free energy of solvation -38.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds