Wall clock time and date at job start Tue Mar 31 2020 23:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.86886 * 2 1 4 4 C 1.54319 * 110.01308 * 121.09561 * 2 1 3 5 5 C 1.55165 * 102.94251 * 141.68146 * 4 2 1 6 6 H 1.08994 * 111.00097 * 82.61038 * 5 4 2 7 7 N 1.46497 * 111.00524 * 206.42866 * 5 4 2 8 8 C 1.34780 * 119.99847 * 205.00321 * 7 5 4 9 9 O 1.21623 * 119.99519 * 359.97438 * 8 7 5 10 10 C 1.47224 * 120.00112 * 179.97438 * 8 7 5 11 11 C 1.37005 * 127.19403 * 179.68373 * 10 8 7 12 12 N 1.33314 * 106.37658 * 179.84540 * 11 10 8 13 13 N 1.28509 * 109.44062 * 0.43223 * 12 11 10 14 14 N 1.28717 * 110.63726 * 359.72442 * 13 12 11 15 15 H 0.96999 * 126.03775 * 180.02562 * 14 13 12 16 16 C 1.55127 * 101.48205 * 324.33548 * 5 4 2 17 17 N 1.47017 * 109.87950 * 238.98484 * 2 1 3 18 18 C 1.34775 * 125.64994 * 61.45184 * 17 2 1 19 19 O 1.21276 * 119.99984 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00022 * 179.97438 * 18 17 2 21 21 S 1.81000 * 109.47429 * 179.97438 * 20 18 17 22 22 C 1.76199 * 100.00325 * 179.97438 * 21 20 18 23 23 H 1.07991 * 119.99794 * 0.02562 * 22 21 20 24 24 C 1.38798 * 119.99771 * 180.02562 * 22 21 20 25 25 N 1.31633 * 120.00311 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99962 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47399 * 119.99822 * 26 24 22 29 29 H 1.48498 * 109.47295 * 240.00429 * 26 24 22 30 30 H 1.09002 * 109.46959 * 179.56591 * 1 2 3 31 31 H 1.09006 * 109.47103 * 299.56015 * 1 2 3 32 32 H 1.09000 * 109.47540 * 59.56033 * 1 2 3 33 33 H 1.08991 * 110.72412 * 260.04768 * 4 2 1 34 34 H 1.09001 * 110.72239 * 23.14736 * 4 2 1 35 35 H 0.97001 * 120.00063 * 24.99316 * 7 5 4 36 36 H 1.08009 * 126.80657 * 359.97438 * 11 10 8 37 37 H 1.09000 * 110.49995 * 278.44879 * 16 5 4 38 38 H 1.09004 * 110.34240 * 156.05790 * 16 5 4 39 39 H 1.09001 * 109.47434 * 59.99478 * 20 18 17 40 40 H 1.08999 * 109.47072 * 299.99957 * 20 18 17 41 41 H 0.97000 * 119.99668 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0581 -0.7489 1.2416 5 6 3.2919 -1.5107 0.6893 6 1 4.1683 -0.8636 0.6570 7 7 3.5611 -2.7158 1.4776 8 6 4.8056 -3.2317 1.5163 9 8 5.7050 -2.6970 0.8963 10 6 5.0763 -4.4425 2.3089 11 6 6.2751 -5.0912 2.4469 12 7 6.0507 -6.1281 3.2542 13 7 4.8116 -6.1449 3.5943 14 7 4.1804 -5.1596 3.0580 15 1 3.2374 -4.9597 3.1655 16 6 2.8130 -1.8793 -0.7394 17 7 2.0299 -0.7124 -1.1849 18 6 1.8048 -0.3602 -2.4662 19 8 1.1379 0.6211 -2.7172 20 6 2.3819 -1.1858 -3.5871 21 16 1.9060 -0.4623 -5.1764 22 6 2.6923 -1.5931 -6.2753 23 1 3.2563 -2.4254 -5.8810 24 6 2.5869 -1.4141 -7.6476 25 7 1.8999 -0.3993 -8.1282 26 14 3.4211 -2.6125 -8.8126 27 1 4.1254 -3.6575 -8.0270 28 1 2.3996 -3.2512 -9.6809 29 1 4.4011 -1.8821 -9.6561 30 1 -0.3633 -1.0277 -0.0078 31 1 -0.3634 0.5070 0.8940 32 1 -0.3634 0.5206 -0.8860 33 1 2.3557 -0.0451 2.0189 34 1 1.3093 -1.4449 1.6197 35 1 2.8436 -3.1424 1.9718 36 1 7.2159 -4.8157 1.9934 37 1 2.1852 -2.7700 -0.7137 38 1 3.6681 -2.0358 -1.3971 39 1 1.9989 -2.2043 -3.5227 40 1 3.4687 -1.2006 -3.5051 41 1 1.4677 0.2236 -7.5232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572386763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:14 Heat of formation + Delta-G solvation = 26.307668 kcal Electronic energy + Delta-G solvation = -26260.094323 eV Core-core repulsion = 22303.537851 eV Total energy + Delta-G solvation = -3956.556472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.93527 -40.78020 -39.66099 -37.58576 -35.13804 -33.99730 -32.55473 -32.39747 -32.11418 -30.21253 -28.92187 -26.22287 -25.26649 -24.86935 -23.69127 -22.68080 -21.74629 -21.49616 -19.97485 -19.13595 -18.24517 -17.45710 -17.17812 -16.93198 -16.90103 -15.94358 -15.41275 -15.18767 -14.89532 -14.77105 -14.62852 -14.13009 -13.87874 -13.80536 -13.37316 -13.25231 -12.82178 -12.76842 -12.44472 -12.33637 -12.22252 -11.92505 -11.86732 -11.81468 -11.37910 -11.35542 -11.22364 -10.91584 -10.84809 -10.21910 -10.17256 -9.95146 -9.61479 -9.51997 -9.03518 -8.74347 -8.25775 -6.70891 -6.64822 -4.03168 0.26249 1.72308 1.78445 2.12041 2.43112 2.71866 2.86857 3.30322 3.39010 3.39394 3.53292 3.67221 3.85652 4.06019 4.11388 4.22203 4.38596 4.39310 4.55833 4.66695 4.77972 4.86166 5.12328 5.17641 5.19938 5.24608 5.32536 5.36776 5.39332 5.42288 5.45681 5.69042 5.72498 5.83592 5.93671 5.96186 6.07868 6.31680 6.57787 7.30762 7.43255 7.66631 7.91050 8.35414 8.47842 9.24309 10.79247 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.002656 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.099958 B =10538.749935 C =12629.474916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.133 3.867 6 H 0.117 0.883 7 N -0.715 5.715 8 C 0.598 3.402 9 O -0.501 6.501 10 C -0.069 4.069 11 C 0.039 3.961 12 N -0.268 5.268 13 N -0.043 5.043 14 N -0.375 5.375 15 H 0.450 0.550 16 C 0.091 3.909 17 N -0.621 5.621 18 C 0.551 3.449 19 O -0.510 6.510 20 C -0.126 4.126 21 S -0.116 6.116 22 C -0.606 4.606 23 H 0.066 0.934 24 C 0.035 3.965 25 N -0.885 5.885 26 Si 1.090 2.910 27 H -0.288 1.288 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.398 0.602 36 H 0.207 0.793 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -6.714 27.240 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.028 3.972 6 H 0.135 0.865 7 N -0.367 5.367 8 C 0.381 3.619 9 O -0.372 6.372 10 C -0.203 4.203 11 C -0.120 4.120 12 N -0.133 5.133 13 N -0.025 5.025 14 N -0.102 5.102 15 H 0.297 0.703 16 C -0.034 4.034 17 N -0.359 5.359 18 C 0.340 3.660 19 O -0.383 6.383 20 C -0.277 4.277 21 S 0.111 5.889 22 C -0.754 4.754 23 H 0.085 0.915 24 C -0.175 4.175 25 N -0.519 5.519 26 Si 0.916 3.084 27 H -0.214 1.214 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.224 0.776 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.490 -6.375 25.588 26.412 hybrid contribution -0.324 -0.252 1.563 1.616 sum 1.166 -6.627 27.150 27.972 Atomic orbital electron populations 1.22151 0.94307 1.02357 1.03328 1.21459 0.95090 0.96637 0.83391 0.90115 1.23046 0.96411 0.99947 0.97761 1.22269 0.99481 0.85584 0.89875 0.86522 1.45715 1.09973 1.29766 1.51274 1.16759 0.83130 0.81728 0.80256 1.90944 1.44165 1.59332 1.42791 1.22324 0.92245 1.00363 1.05366 1.24009 0.98745 0.91686 0.97585 1.75053 1.06157 1.19106 1.12973 1.78266 1.01354 1.06615 1.16255 1.45609 1.13083 1.19081 1.32468 0.70300 1.22665 0.96179 0.89381 0.95224 1.48463 1.53902 1.28548 1.04974 1.19985 0.79764 0.84969 0.81323 1.90702 1.38306 1.26863 1.82438 1.23313 1.03861 1.02336 0.98182 1.84801 1.70357 1.39962 0.93820 1.23745 1.41148 1.15534 0.95018 0.91527 1.26061 0.96065 0.99401 0.95979 1.70745 1.29219 1.12981 1.38957 0.83252 0.75969 0.74421 0.74764 1.21368 1.20882 1.20824 0.92579 0.91783 0.90523 0.89019 0.89756 0.76792 0.77630 0.91055 0.89460 0.89141 0.88934 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.11 37.16 0.34 -1.27 16 2 C 0.14 1.34 3.45 -66.96 -0.23 1.11 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.70 6.12 -24.89 -0.15 -0.85 16 5 C 0.13 0.90 3.44 -65.66 -0.23 0.67 16 6 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 7 N -0.72 -3.25 5.19 -52.75 -0.27 -3.52 16 8 C 0.60 4.34 7.81 -12.61 -0.10 4.24 16 9 O -0.50 -5.66 16.56 5.26 0.09 -5.57 16 10 C -0.07 -0.44 7.17 -82.34 -0.59 -1.03 16 11 C 0.04 0.30 11.87 -17.36 -0.21 0.10 16 12 N -0.27 -2.51 12.35 30.47 0.38 -2.13 16 13 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 14 N -0.37 -1.67 6.98 33.31 0.23 -1.44 16 15 H 0.45 0.06 8.32 -190.33 -1.58 -1.52 16 16 C 0.09 0.88 6.39 -2.41 -0.02 0.86 16 17 N -0.62 -7.96 3.06 -162.88 -0.50 -8.46 16 18 C 0.55 10.04 7.66 -10.99 -0.08 9.96 16 19 O -0.51 -11.08 14.89 5.56 0.08 -10.99 16 20 C -0.13 -2.55 5.16 36.00 0.19 -2.36 16 21 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 22 C -0.61 -17.45 9.50 30.94 0.29 -17.16 16 23 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 24 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 25 N -0.88 -27.47 13.67 55.49 0.76 -26.72 16 26 Si 1.09 25.10 29.92 -169.99 -5.09 20.01 16 27 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.04 6.87 -51.93 -0.36 0.69 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.28 7.72 -51.93 -0.40 -0.12 16 35 H 0.40 0.41 7.83 -40.82 -0.32 0.09 16 36 H 0.21 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.97 7.48 -51.93 -0.39 0.58 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 40 H 0.09 1.78 7.85 -51.92 -0.41 1.38 16 41 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -38.84 365.49 -7.30 -46.14 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.30 Total: -3.29 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.88 Total: -4.80 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 1.40 Total: -41.80 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.17 Total: -16.56 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.01 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.84 -7.30 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.447 kcal (2) G-P(sol) polarization free energy of solvation -38.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds