Wall clock time and date at job start Tue Mar 31 2020 23:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.86942 * 2 1 4 4 C 1.54326 * 109.88343 * 121.17321 * 2 1 3 5 5 C 1.55161 * 102.93962 * 141.60941 * 4 2 1 6 6 H 1.08992 * 111.03508 * 206.41018 * 5 4 2 7 7 N 1.46504 * 111.00210 * 82.57460 * 5 4 2 8 8 C 1.34775 * 119.99648 * 161.35301 * 7 5 4 9 9 O 1.21612 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.47235 * 119.99811 * 179.97438 * 8 7 5 11 11 C 1.37008 * 127.19244 * 179.67583 * 10 8 7 12 12 N 1.33315 * 106.37608 * 180.26422 * 11 10 8 13 13 N 1.28523 * 109.43856 * 0.02562 * 12 11 10 14 14 N 1.28710 * 110.63762 * 359.97438 * 13 12 11 15 15 H 0.97001 * 126.04020 * 180.02562 * 14 13 12 16 16 C 1.54910 * 101.58338 * 324.49943 * 5 4 2 17 17 N 1.47025 * 109.88158 * 238.98345 * 2 1 3 18 18 C 1.34777 * 125.64639 * 61.60693 * 17 2 1 19 19 O 1.21281 * 120.00304 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99664 * 180.02562 * 18 17 2 21 21 S 1.80995 * 109.46813 * 179.97438 * 20 18 17 22 22 C 1.76201 * 99.99956 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99936 * 359.97438 * 22 21 20 24 24 C 1.38799 * 120.00242 * 180.02562 * 22 21 20 25 25 N 1.31633 * 119.99900 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00012 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47452 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47006 * 119.99653 * 26 24 22 29 29 H 1.48505 * 109.46802 * 239.99122 * 26 24 22 30 30 H 1.08998 * 109.47173 * 179.56557 * 1 2 3 31 31 H 1.09005 * 109.46707 * 299.55961 * 1 2 3 32 32 H 1.08992 * 109.47155 * 59.56450 * 1 2 3 33 33 H 1.08991 * 110.71731 * 23.24896 * 4 2 1 34 34 H 1.09000 * 110.71990 * 259.97349 * 4 2 1 35 35 H 0.96998 * 120.00195 * 341.34709 * 7 5 4 36 36 H 1.08003 * 126.81022 * 0.26329 * 11 10 8 37 37 H 1.08997 * 110.36914 * 155.84926 * 16 5 4 38 38 H 1.09002 * 110.36282 * 278.17106 * 16 5 4 39 39 H 1.08999 * 109.46892 * 299.99511 * 20 18 17 40 40 H 1.08996 * 109.47023 * 59.99674 * 20 18 17 41 41 H 0.97003 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2877 -1.5152 0.6902 6 1 3.4859 -2.4127 1.2760 7 7 4.4675 -0.6476 0.6484 8 6 5.6992 -1.1887 0.5669 9 8 5.8312 -2.3970 0.5284 10 6 6.8848 -0.3168 0.5243 11 6 8.1964 -0.7056 0.4484 12 7 8.9204 0.4138 0.4408 13 7 8.1368 1.4304 0.5067 14 7 6.9074 1.0530 0.5586 15 1 6.1335 1.6353 0.6124 16 6 2.8145 -1.8784 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3586 -2.4662 19 8 1.1436 0.6249 -2.7172 20 6 2.3833 -1.1851 -3.5871 21 16 1.9112 -0.4588 -5.1763 22 6 2.6953 -1.5912 -6.2752 23 1 3.2571 -2.4251 -5.8809 24 6 2.5920 -1.4109 -7.6475 25 7 1.9077 -0.3942 -8.1281 26 14 3.4227 -2.6118 -8.8125 27 1 4.1232 -3.6593 -8.0270 28 1 2.3995 -3.2459 -9.6822 29 1 4.4061 -1.8845 -9.6547 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5070 0.8940 32 1 -0.3633 0.5205 -0.8860 33 1 1.3052 -1.4481 1.6162 34 1 2.3530 -0.0487 2.0200 35 1 4.3622 0.3161 0.6793 36 1 8.5697 -1.7181 0.4037 37 1 3.6716 -2.0319 -1.3951 38 1 2.1886 -2.7705 -0.7166 39 1 3.4699 -1.2032 -3.5039 40 1 1.9970 -2.2024 -3.5239 41 1 1.8352 -0.2684 -9.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572386764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:18 Heat of formation + Delta-G solvation = 30.527479 kcal Electronic energy + Delta-G solvation = -26778.441537 eV Core-core repulsion = 22822.068049 eV Total energy + Delta-G solvation = -3956.373487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.77205 -40.80130 -39.47183 -37.51684 -34.83921 -33.78951 -32.46456 -32.32713 -31.97006 -30.22410 -28.81446 -26.19773 -25.52585 -25.12135 -23.52736 -22.70774 -21.81101 -21.05264 -19.84233 -19.08147 -17.73393 -17.39470 -17.14465 -16.81449 -16.57404 -15.72600 -15.35829 -15.03488 -14.83437 -14.73177 -14.60455 -14.42225 -13.94556 -13.82280 -13.19589 -12.95611 -12.68204 -12.65103 -12.61308 -12.30314 -12.04834 -11.81191 -11.72236 -11.56526 -11.19469 -11.10190 -11.08041 -11.04160 -10.78246 -10.72583 -10.03611 -9.86515 -9.81176 -9.43624 -9.10644 -8.64965 -8.29152 -6.55397 -6.25499 -3.96667 0.42184 1.87758 1.95871 2.34325 2.57946 2.77056 2.94757 3.19849 3.23641 3.29351 3.53004 3.81962 3.90938 4.08555 4.17351 4.21991 4.47028 4.53559 4.71770 4.75393 4.92534 4.98999 5.10061 5.10542 5.20704 5.29695 5.38014 5.44867 5.49928 5.55753 5.56189 5.76850 5.84727 5.88060 6.06833 6.09460 6.13829 6.38481 6.71632 7.43365 7.51425 7.57035 7.82693 8.32093 8.44415 9.20390 10.81975 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.003355 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.015482 B = 8344.104043 C =10304.045149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.133 3.867 6 H 0.117 0.883 7 N -0.714 5.714 8 C 0.600 3.400 9 O -0.507 6.507 10 C -0.069 4.069 11 C 0.038 3.962 12 N -0.269 5.269 13 N -0.042 5.042 14 N -0.373 5.373 15 H 0.451 0.549 16 C 0.089 3.911 17 N -0.623 5.623 18 C 0.551 3.449 19 O -0.511 6.511 20 C -0.148 4.148 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.397 0.603 36 H 0.206 0.794 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -0.778 24.626 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.172 4.172 5 C 0.028 3.972 6 H 0.135 0.865 7 N -0.366 5.366 8 C 0.384 3.616 9 O -0.379 6.379 10 C -0.204 4.204 11 C -0.122 4.122 12 N -0.134 5.134 13 N -0.024 5.024 14 N -0.101 5.101 15 H 0.297 0.703 16 C -0.035 4.035 17 N -0.361 5.361 18 C 0.339 3.661 19 O -0.385 6.385 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.231 0.769 36 H 0.223 0.777 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.863 1.005 23.939 24.270 hybrid contribution -0.012 -1.928 -0.518 1.996 sum 3.851 -0.923 23.421 23.754 Atomic orbital electron populations 1.22142 0.94352 1.02542 1.03145 1.21512 0.95292 0.96098 0.84187 0.90897 1.23101 0.96566 1.00313 0.97201 1.22188 0.83760 0.94525 0.96700 0.86521 1.45784 1.05343 1.10277 1.75159 1.16718 0.81161 0.86978 0.76767 1.90901 1.85440 1.12840 1.48763 1.22331 0.98129 0.83843 1.16072 1.23968 0.87890 1.00316 0.99988 1.75044 1.25859 0.95727 1.16756 1.78266 0.86365 1.22026 1.15733 1.45615 1.09821 1.06286 1.48338 0.70253 1.22736 0.96174 0.89574 0.95031 1.48626 1.53974 1.28630 1.04882 1.20020 0.79703 0.84999 0.81343 1.90701 1.38399 1.26853 1.82534 1.23523 1.03517 1.02743 1.00057 1.85359 1.69602 1.37816 0.90558 1.22896 1.38223 1.14149 0.93075 0.90879 1.24987 0.95182 0.95969 0.97350 1.70025 1.38507 1.28103 1.13650 0.86121 0.79052 0.80279 0.80106 1.19552 1.20495 1.20515 0.92354 0.91951 0.90640 0.88240 0.89298 0.76857 0.77725 0.89726 0.89890 0.89564 0.89286 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.13 1.19 3.45 -66.95 -0.23 0.96 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.13 -0.66 6.05 -24.89 -0.15 -0.81 16 5 C 0.13 0.86 3.32 -65.78 -0.22 0.64 16 6 H 0.12 0.71 7.73 -51.93 -0.40 0.31 16 7 N -0.71 -4.45 5.22 -52.86 -0.28 -4.73 16 8 C 0.60 5.19 7.81 -12.61 -0.10 5.09 16 9 O -0.51 -5.93 16.67 5.27 0.09 -5.84 16 10 C -0.07 -0.58 7.17 -82.33 -0.59 -1.17 16 11 C 0.04 0.36 11.87 -17.35 -0.21 0.15 16 12 N -0.27 -3.03 12.35 30.47 0.38 -2.65 16 13 N -0.04 -0.42 13.35 60.35 0.81 0.38 16 14 N -0.37 -2.61 6.97 33.31 0.23 -2.37 16 15 H 0.45 1.43 8.32 -190.33 -1.58 -0.15 16 16 C 0.09 0.86 6.38 -2.53 -0.02 0.84 16 17 N -0.62 -7.61 3.07 -163.01 -0.50 -8.11 16 18 C 0.55 9.81 7.66 -10.98 -0.08 9.72 16 19 O -0.51 -10.92 14.90 5.56 0.08 -10.84 16 20 C -0.15 -2.96 5.16 36.01 0.19 -2.77 16 21 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 23 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 25 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 26 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.02 6.88 -51.93 -0.36 0.66 16 33 H 0.10 0.40 7.85 -51.93 -0.41 0.00 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.40 1.61 7.88 -40.82 -0.32 1.29 16 36 H 0.21 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -37.74 367.16 -7.40 -45.15 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.37 Total: -2.32 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -0.87 Total: -1.51 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 1.37 Total: -42.78 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.17 Total: -16.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.74 -7.40 -45.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.674 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds