Wall clock time and date at job start Tue Mar 31 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.86942 * 2 1 4 4 C 1.54326 * 109.88343 * 121.17321 * 2 1 3 5 5 C 1.55161 * 102.93962 * 141.60941 * 4 2 1 6 6 H 1.08992 * 111.03508 * 206.41018 * 5 4 2 7 7 N 1.46504 * 111.00210 * 82.57460 * 5 4 2 8 8 C 1.34775 * 119.99648 * 161.35301 * 7 5 4 9 9 O 1.21612 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.47235 * 119.99811 * 179.97438 * 8 7 5 11 11 C 1.37008 * 127.19244 * 179.67583 * 10 8 7 12 12 N 1.33315 * 106.37608 * 180.26422 * 11 10 8 13 13 N 1.28523 * 109.43856 * 0.02562 * 12 11 10 14 14 N 1.28710 * 110.63762 * 359.97438 * 13 12 11 15 15 H 0.97001 * 126.04020 * 180.02562 * 14 13 12 16 16 C 1.54910 * 101.58338 * 324.49943 * 5 4 2 17 17 N 1.47025 * 109.88158 * 238.98345 * 2 1 3 18 18 C 1.34777 * 125.64639 * 61.60693 * 17 2 1 19 19 O 1.21281 * 120.00304 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99664 * 180.02562 * 18 17 2 21 21 S 1.80995 * 109.46813 * 179.97438 * 20 18 17 22 22 C 1.76201 * 99.99956 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99936 * 359.97438 * 22 21 20 24 24 C 1.38799 * 120.00242 * 180.02562 * 22 21 20 25 25 N 1.31633 * 119.99900 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00012 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47452 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47006 * 119.99653 * 26 24 22 29 29 H 1.48505 * 109.46802 * 239.99122 * 26 24 22 30 30 H 1.08998 * 109.47173 * 179.56557 * 1 2 3 31 31 H 1.09005 * 109.46707 * 299.55961 * 1 2 3 32 32 H 1.08992 * 109.47155 * 59.56450 * 1 2 3 33 33 H 1.08991 * 110.71731 * 23.24896 * 4 2 1 34 34 H 1.09000 * 110.71990 * 259.97349 * 4 2 1 35 35 H 0.96998 * 120.00195 * 341.34709 * 7 5 4 36 36 H 1.08003 * 126.81022 * 0.26329 * 11 10 8 37 37 H 1.08997 * 110.36914 * 155.84926 * 16 5 4 38 38 H 1.09002 * 110.36282 * 278.17106 * 16 5 4 39 39 H 1.08999 * 109.46892 * 299.99511 * 20 18 17 40 40 H 1.08996 * 109.47023 * 59.99674 * 20 18 17 41 41 H 0.97003 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 1.2417 5 6 3.2877 -1.5152 0.6902 6 1 3.4859 -2.4127 1.2760 7 7 4.4675 -0.6476 0.6484 8 6 5.6992 -1.1887 0.5669 9 8 5.8312 -2.3970 0.5284 10 6 6.8848 -0.3168 0.5243 11 6 8.1964 -0.7056 0.4484 12 7 8.9204 0.4138 0.4408 13 7 8.1368 1.4304 0.5067 14 7 6.9074 1.0530 0.5586 15 1 6.1335 1.6353 0.6124 16 6 2.8145 -1.8784 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3586 -2.4662 19 8 1.1436 0.6249 -2.7172 20 6 2.3833 -1.1851 -3.5871 21 16 1.9112 -0.4588 -5.1763 22 6 2.6953 -1.5912 -6.2752 23 1 3.2571 -2.4251 -5.8809 24 6 2.5920 -1.4109 -7.6475 25 7 1.9077 -0.3942 -8.1281 26 14 3.4227 -2.6118 -8.8125 27 1 4.1232 -3.6593 -8.0270 28 1 2.3995 -3.2459 -9.6822 29 1 4.4061 -1.8845 -9.6547 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5070 0.8940 32 1 -0.3633 0.5205 -0.8860 33 1 1.3052 -1.4481 1.6162 34 1 2.3530 -0.0487 2.0200 35 1 4.3622 0.3161 0.6793 36 1 8.5697 -1.7181 0.4037 37 1 3.6716 -2.0319 -1.3951 38 1 2.1886 -2.7705 -0.7166 39 1 3.4699 -1.2032 -3.5039 40 1 1.9970 -2.2024 -3.5239 41 1 1.8352 -0.2684 -9.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572386764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:17 Heat of formation + Delta-G solvation = 0.337553 kcal Electronic energy + Delta-G solvation = -26779.750670 eV Core-core repulsion = 22822.068049 eV Total energy + Delta-G solvation = -3957.682621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.46961 -41.63905 -40.43583 -38.60112 -35.59766 -34.63128 -34.51136 -33.35162 -32.68306 -30.96874 -30.22852 -27.70881 -26.93183 -25.83320 -24.27670 -23.61211 -22.51304 -21.72289 -20.52498 -20.32705 -19.49794 -18.30737 -17.84288 -17.74343 -17.48586 -16.92440 -16.74419 -16.45216 -16.02987 -15.88019 -15.40389 -15.31398 -15.20289 -14.81356 -14.45069 -14.15907 -13.89754 -13.61630 -13.37322 -13.26474 -13.19905 -13.04634 -12.94397 -12.62728 -12.45356 -12.44823 -12.29823 -11.89403 -11.78950 -11.75126 -11.45144 -11.19703 -10.95163 -10.73721 -10.43441 -10.33462 -9.67959 -8.71796 -8.39341 -6.17611 -0.25691 1.13963 1.20717 1.37029 1.37867 1.41533 1.53486 1.54670 1.76743 1.90568 2.04550 2.23082 2.95057 3.16818 3.21679 3.34981 3.42995 3.58894 3.81746 3.87022 3.94799 4.04585 4.14365 4.15570 4.32082 4.39279 4.40446 4.59063 4.68243 4.78078 4.82036 4.89445 4.93736 5.07477 5.25731 5.33874 5.37452 5.50377 5.59736 6.15351 6.16104 6.33091 6.81310 7.02427 7.11232 7.11448 8.70062 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.003355 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.015482 B = 8344.104043 C =10304.045149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.141 3.859 6 H 0.133 0.867 7 N -0.702 5.702 8 C 0.606 3.394 9 O -0.538 6.538 10 C -0.066 4.066 11 C 0.027 3.973 12 N -0.299 5.299 13 N -0.060 5.060 14 N -0.351 5.351 15 H 0.467 0.533 16 C 0.078 3.922 17 N -0.609 5.609 18 C 0.550 3.450 19 O -0.556 6.556 20 C -0.123 4.123 21 S -0.143 6.143 22 C -0.549 4.549 23 H 0.078 0.922 24 C 0.017 3.983 25 N -0.909 5.909 26 Si 0.996 3.004 27 H -0.259 1.259 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.030 0.970 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.410 0.590 36 H 0.219 0.781 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.141 27.033 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.093 0.907 4 C -0.150 4.150 5 C 0.036 3.964 6 H 0.151 0.849 7 N -0.354 5.354 8 C 0.390 3.610 9 O -0.412 6.412 10 C -0.201 4.201 11 C -0.133 4.133 12 N -0.163 5.163 13 N -0.043 5.043 14 N -0.081 5.081 15 H 0.317 0.683 16 C -0.045 4.045 17 N -0.344 5.344 18 C 0.337 3.663 19 O -0.434 6.434 20 C -0.274 4.274 21 S 0.084 5.916 22 C -0.696 4.696 23 H 0.096 0.904 24 C -0.188 4.188 25 N -0.546 5.546 26 Si 0.818 3.182 27 H -0.183 1.183 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.246 0.754 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.193 -0.332 26.412 26.744 hybrid contribution -0.170 -1.505 -1.135 1.893 sum 4.023 -1.837 25.276 25.660 Atomic orbital electron populations 1.22106 0.94842 1.02459 1.02455 1.21874 0.94999 0.96712 0.84304 0.90702 1.23103 0.95698 1.00665 0.95487 1.22223 0.84103 0.95511 0.94562 0.84926 1.45727 1.04629 1.11104 1.73901 1.16669 0.81640 0.86429 0.76312 1.90894 1.85881 1.14082 1.50382 1.22297 0.97869 0.84182 1.15735 1.24312 0.88378 1.00654 0.99921 1.75017 1.26879 0.96425 1.17968 1.78204 0.87310 1.22096 1.16658 1.45582 1.09721 1.06156 1.46621 0.68279 1.23038 0.95602 0.89126 0.96739 1.48493 1.52824 1.29235 1.03887 1.19556 0.79620 0.84292 0.82798 1.90687 1.40565 1.28628 1.83554 1.23325 1.04062 1.03011 0.97039 1.85463 1.70652 1.39904 0.95535 1.23206 1.38334 1.14283 0.93814 0.90371 1.26080 0.95651 0.97854 0.99213 1.70174 1.39990 1.30152 1.14236 0.84948 0.78017 0.77787 0.77490 1.18288 1.19617 1.19821 0.92055 0.88907 0.95097 0.86137 0.85918 0.75362 0.76427 0.91461 0.88302 0.88684 0.88159 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.10 71.98 0.66 -2.17 16 2 C 0.12 1.87 3.45 45.34 0.16 2.02 16 3 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 4 C -0.11 -0.54 6.05 31.79 0.19 -0.35 16 5 C 0.14 1.26 3.32 46.38 0.15 1.41 16 6 H 0.13 0.99 7.73 -2.39 -0.02 0.97 16 7 N -0.70 -6.41 5.22 -439.40 -2.29 -8.71 16 8 C 0.61 9.05 7.81 86.61 0.68 9.73 16 9 O -0.54 -11.50 16.67 -4.07 -0.07 -11.57 16 10 C -0.07 -0.99 7.17 40.41 0.29 -0.70 16 11 C 0.03 0.49 11.87 84.18 1.00 1.49 16 12 N -0.30 -6.60 12.35 -57.50 -0.71 -7.31 16 13 N -0.06 -1.18 13.35 37.02 0.49 -0.69 16 14 N -0.35 -4.31 6.97 -48.52 -0.34 -4.65 16 15 H 0.47 1.90 8.32 -219.90 -1.83 0.07 16 16 C 0.08 1.30 6.38 86.86 0.55 1.86 16 17 N -0.61 -13.91 3.07 -788.03 -2.42 -16.32 16 18 C 0.55 19.70 7.66 87.66 0.67 20.37 16 19 O -0.56 -24.62 14.90 -3.03 -0.05 -24.66 16 20 C -0.12 -4.99 5.16 71.24 0.37 -4.62 16 21 S -0.14 -7.94 20.57 -56.49 -1.16 -9.11 16 22 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 23 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 24 C 0.02 0.98 5.49 84.86 0.47 1.44 16 25 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 26 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 29 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.03 0.83 6.88 -2.39 -0.02 0.81 16 33 H 0.12 0.25 7.85 -2.39 -0.02 0.23 16 34 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.41 1.79 7.88 -92.71 -0.73 1.06 16 36 H 0.22 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.07 1.40 7.48 -2.39 -0.02 1.38 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 3.64 7.85 -2.40 -0.02 3.62 16 40 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -86.87 367.16 0.14 -86.73 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -1.46 Total: 6.36 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.83 Total: -0.59 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.98 Total: -93.25 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.11 Total: -36.23 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -86.87 0.14 -86.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.064 kcal (2) G-P(sol) polarization free energy of solvation -86.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds