Wall clock time and date at job start Tue Mar 31 2020 23:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.87094 * 2 1 4 4 C 1.54371 * 109.84997 * 238.82347 * 2 1 3 5 5 C 1.55160 * 102.91698 * 262.73225 * 4 2 1 6 6 H 1.08998 * 111.00751 * 82.64085 * 5 4 2 7 7 N 1.46499 * 110.99918 * 206.45369 * 5 4 2 8 8 C 1.34783 * 119.99987 * 201.81804 * 7 5 4 9 9 O 1.21624 * 119.99590 * 0.02562 * 8 7 5 10 10 C 1.47226 * 120.00012 * 179.97438 * 8 7 5 11 11 C 1.37010 * 127.18551 * 179.97438 * 10 8 7 12 12 N 1.33320 * 106.37124 * 180.02562 * 11 10 8 13 13 N 1.28508 * 109.44102 * 0.02562 * 12 11 10 14 14 N 1.28714 * 110.63887 * 0.02562 * 13 12 11 15 15 H 0.97001 * 126.04313 * 179.73086 * 14 13 12 16 16 C 1.54912 * 101.61630 * 324.54483 * 5 4 2 17 17 N 1.47021 * 109.88172 * 121.00971 * 2 1 3 18 18 C 1.34777 * 125.65052 * 300.44825 * 17 2 1 19 19 O 1.21274 * 120.00062 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99815 * 180.02562 * 18 17 2 21 21 S 1.81000 * 109.46871 * 179.97438 * 20 18 17 22 22 C 1.76199 * 99.99879 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00290 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99750 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00279 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99591 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47508 * 90.00469 * 26 24 22 28 28 H 1.48504 * 109.46786 * 209.99945 * 26 24 22 29 29 H 1.48500 * 109.47491 * 329.99941 * 26 24 22 30 30 H 1.08996 * 109.47521 * 300.44271 * 1 2 3 31 31 H 1.09000 * 109.46929 * 60.44285 * 1 2 3 32 32 H 1.09002 * 109.46807 * 180.43725 * 1 2 3 33 33 H 1.08994 * 110.70830 * 144.38753 * 4 2 1 34 34 H 1.09001 * 110.75557 * 21.09542 * 4 2 1 35 35 H 0.96997 * 120.00329 * 21.82324 * 7 5 4 36 36 H 1.07997 * 126.81472 * 0.02562 * 11 10 8 37 37 H 1.09002 * 110.36378 * 155.83170 * 16 5 4 38 38 H 1.08999 * 110.36809 * 278.04415 * 16 5 4 39 39 H 1.08992 * 109.47537 * 299.99828 * 20 18 17 40 40 H 1.09000 * 109.47239 * 59.99971 * 20 18 17 41 41 H 0.97001 * 120.00173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0542 -0.7517 -1.2423 5 6 2.3519 -2.1704 -0.6892 6 1 1.4457 -2.7751 -0.6564 7 7 3.3938 -2.8332 -1.4775 8 6 3.4964 -4.1771 -1.4644 9 8 2.7237 -4.8394 -0.7985 10 6 4.5432 -4.8432 -2.2570 11 6 4.7801 -6.1894 -2.3509 12 7 5.8191 -6.3315 -3.1741 13 7 6.2118 -5.1740 -3.5710 14 7 5.4852 -4.2463 -3.0533 15 1 5.5882 -3.2928 -3.1986 16 6 2.8568 -1.8487 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.7752 -0.3809 2.4663 19 8 1.0783 0.5793 2.7172 20 6 2.3565 -1.2036 3.5872 21 16 1.8373 -0.5101 5.1764 22 6 2.6359 -1.6322 6.2754 23 1 3.2275 -2.4452 5.8812 24 6 2.5039 -1.4719 7.6478 25 7 1.7817 -0.4819 8.1283 26 14 3.3512 -2.6611 8.8128 27 1 4.7097 -2.1553 9.1349 28 1 2.5579 -2.7793 10.0626 29 1 3.4594 -3.9941 8.1673 30 1 -0.3634 0.5207 0.8859 31 1 -0.3633 0.5069 -0.8939 32 1 -0.3633 -1.0277 0.0078 33 1 2.9647 -0.2857 -1.6190 34 1 1.2909 -0.7930 -2.0193 35 1 4.0099 -2.3050 -2.0088 36 1 4.2337 -6.9787 -1.8563 37 1 2.7088 -2.7060 1.3962 38 1 3.9096 -1.5675 0.7155 39 1 2.0019 -2.2310 3.5055 40 1 3.4444 -1.1885 3.5226 41 1 1.6891 -0.3701 9.0873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572386765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:21 Heat of formation + Delta-G solvation = 32.097810 kcal Electronic energy + Delta-G solvation = -26269.129689 eV Core-core repulsion = 22312.824297 eV Total energy + Delta-G solvation = -3956.305393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.91297 -40.74477 -39.59418 -37.51143 -35.08755 -33.96245 -32.44669 -32.32941 -32.06853 -30.03910 -28.79597 -26.19182 -25.51480 -25.21186 -23.69095 -22.79502 -21.63335 -21.33000 -19.94873 -19.16107 -17.82272 -17.37087 -17.11214 -16.93237 -16.41027 -15.69351 -15.53691 -15.05737 -14.84479 -14.81575 -14.68643 -14.34850 -14.07992 -13.67153 -13.31143 -13.18576 -12.77144 -12.69070 -12.66760 -12.29525 -11.88701 -11.84018 -11.76744 -11.51143 -11.33429 -11.07314 -11.05389 -11.00940 -10.80286 -10.77167 -10.14622 -9.92227 -9.82519 -9.39796 -9.08113 -8.66147 -8.26915 -6.52864 -6.23369 -3.94320 0.28814 1.74554 1.80913 2.16372 2.46288 2.84000 2.97613 3.21681 3.24943 3.29763 3.55430 3.70208 3.88649 4.12722 4.14863 4.19461 4.41711 4.46138 4.58092 4.70042 4.86018 4.95670 5.11968 5.19426 5.22996 5.33699 5.39512 5.42592 5.44343 5.53935 5.59175 5.75290 5.83999 5.90836 5.96058 6.10016 6.18420 6.42206 6.61433 7.34344 7.52899 7.58507 7.68782 8.33766 8.46847 9.22162 10.84051 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002670 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.246663 B =10485.236314 C =12601.167484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.139 3.861 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.134 3.866 6 H 0.114 0.886 7 N -0.716 5.716 8 C 0.597 3.403 9 O -0.500 6.500 10 C -0.068 4.068 11 C 0.039 3.961 12 N -0.268 5.268 13 N -0.043 5.043 14 N -0.375 5.375 15 H 0.450 0.550 16 C 0.091 3.909 17 N -0.622 5.622 18 C 0.552 3.448 19 O -0.509 6.509 20 C -0.149 4.149 21 S -0.059 6.059 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.398 0.602 36 H 0.207 0.793 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -3.862 -26.607 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.029 3.971 6 H 0.132 0.868 7 N -0.368 5.368 8 C 0.381 3.619 9 O -0.372 6.372 10 C -0.202 4.202 11 C -0.121 4.121 12 N -0.133 5.133 13 N -0.025 5.025 14 N -0.102 5.102 15 H 0.297 0.703 16 C -0.034 4.034 17 N -0.360 5.360 18 C 0.341 3.659 19 O -0.382 6.382 20 C -0.299 4.299 21 S 0.167 5.833 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.196 1.196 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.232 0.768 36 H 0.224 0.776 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.320 -3.256 -26.358 26.908 hybrid contribution 0.989 -0.737 0.790 1.465 sum 5.310 -3.993 -25.569 26.418 Atomic orbital electron populations 1.22194 0.94336 1.02589 1.03353 1.21437 0.95193 0.96420 0.83435 0.90235 1.23038 1.02617 0.93613 0.97904 1.22222 0.91207 0.93678 0.90034 0.86765 1.45732 1.35457 1.05963 1.49600 1.16761 0.82543 0.82006 0.80628 1.90945 1.41243 1.64224 1.40773 1.22337 0.98663 0.94947 1.04302 1.24007 0.95721 0.94461 0.97881 1.75052 1.11502 1.14708 1.12050 1.78261 1.15509 0.91897 1.16880 1.45606 1.21512 1.11796 1.31325 0.70298 1.22608 0.95287 0.90397 0.95114 1.48495 1.52144 1.30338 1.05014 1.20019 0.79947 0.84697 0.81218 1.90698 1.37127 1.27995 1.82401 1.23533 1.03705 1.02670 0.99999 1.85369 1.67224 1.40160 0.90522 1.22851 1.36497 1.15906 0.93065 0.90930 1.24989 0.95217 0.95982 0.97354 1.70012 1.37281 1.29278 1.13713 0.86169 0.79195 0.80543 0.79619 1.20271 1.20716 1.19630 0.90329 0.91877 0.92417 0.89955 0.88885 0.76814 0.77643 0.89464 0.91098 0.89194 0.89398 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.06 37.16 0.34 -1.42 16 2 C 0.14 1.37 3.50 -66.93 -0.23 1.14 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -0.72 6.13 -24.87 -0.15 -0.87 16 5 C 0.13 0.92 3.37 -65.78 -0.22 0.70 16 6 H 0.11 0.97 7.63 -51.93 -0.40 0.58 16 7 N -0.72 -3.34 5.21 -52.86 -0.28 -3.62 16 8 C 0.60 4.42 7.81 -12.61 -0.10 4.32 16 9 O -0.50 -5.73 16.61 5.26 0.09 -5.64 16 10 C -0.07 -0.44 7.17 -82.33 -0.59 -1.03 16 11 C 0.04 0.30 11.87 -17.35 -0.21 0.10 16 12 N -0.27 -2.54 12.35 30.47 0.38 -2.16 16 13 N -0.04 -0.34 13.35 60.35 0.81 0.46 16 14 N -0.37 -1.70 6.97 33.31 0.23 -1.47 16 15 H 0.45 0.09 8.32 -190.33 -1.58 -1.49 16 16 C 0.09 0.90 6.39 -2.53 -0.02 0.88 16 17 N -0.62 -8.09 3.08 -162.99 -0.50 -8.59 16 18 C 0.55 10.15 7.65 -10.99 -0.08 10.07 16 19 O -0.51 -11.15 14.76 5.56 0.08 -11.06 16 20 C -0.15 -3.01 5.16 36.01 0.19 -2.82 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 22 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 26 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 30 H 0.08 1.11 6.74 -51.93 -0.35 0.76 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.27 8.00 -51.93 -0.42 -0.15 16 34 H 0.09 0.38 7.83 -51.93 -0.41 -0.03 16 35 H 0.40 0.44 7.80 -40.82 -0.32 0.12 16 36 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.09 1.00 7.48 -51.93 -0.39 0.61 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -38.18 366.61 -7.40 -45.58 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -6.35 Total: -4.42 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.88 Total: -1.85 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 1.37 Total: -40.73 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.70 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.18 -7.40 -45.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.676 kcal (2) G-P(sol) polarization free energy of solvation -38.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds