Wall clock time and date at job start Tue Mar 31 2020 23:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.87094 * 2 1 4 4 C 1.54371 * 109.84997 * 238.82347 * 2 1 3 5 5 C 1.55160 * 102.91698 * 262.73225 * 4 2 1 6 6 H 1.08998 * 111.00751 * 82.64085 * 5 4 2 7 7 N 1.46499 * 110.99918 * 206.45369 * 5 4 2 8 8 C 1.34783 * 119.99987 * 201.81804 * 7 5 4 9 9 O 1.21624 * 119.99590 * 0.02562 * 8 7 5 10 10 C 1.47226 * 120.00012 * 179.97438 * 8 7 5 11 11 C 1.37010 * 127.18551 * 179.97438 * 10 8 7 12 12 N 1.33320 * 106.37124 * 180.02562 * 11 10 8 13 13 N 1.28508 * 109.44102 * 0.02562 * 12 11 10 14 14 N 1.28714 * 110.63887 * 0.02562 * 13 12 11 15 15 H 0.97001 * 126.04313 * 179.73086 * 14 13 12 16 16 C 1.54912 * 101.61630 * 324.54483 * 5 4 2 17 17 N 1.47021 * 109.88172 * 121.00971 * 2 1 3 18 18 C 1.34777 * 125.65052 * 300.44825 * 17 2 1 19 19 O 1.21274 * 120.00062 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99815 * 180.02562 * 18 17 2 21 21 S 1.81000 * 109.46871 * 179.97438 * 20 18 17 22 22 C 1.76199 * 99.99879 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00290 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99750 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00279 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99591 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47508 * 90.00469 * 26 24 22 28 28 H 1.48504 * 109.46786 * 209.99945 * 26 24 22 29 29 H 1.48500 * 109.47491 * 329.99941 * 26 24 22 30 30 H 1.08996 * 109.47521 * 300.44271 * 1 2 3 31 31 H 1.09000 * 109.46929 * 60.44285 * 1 2 3 32 32 H 1.09002 * 109.46807 * 180.43725 * 1 2 3 33 33 H 1.08994 * 110.70830 * 144.38753 * 4 2 1 34 34 H 1.09001 * 110.75557 * 21.09542 * 4 2 1 35 35 H 0.96997 * 120.00329 * 21.82324 * 7 5 4 36 36 H 1.07997 * 126.81472 * 0.02562 * 11 10 8 37 37 H 1.09002 * 110.36378 * 155.83170 * 16 5 4 38 38 H 1.08999 * 110.36809 * 278.04415 * 16 5 4 39 39 H 1.08992 * 109.47537 * 299.99828 * 20 18 17 40 40 H 1.09000 * 109.47239 * 59.99971 * 20 18 17 41 41 H 0.97001 * 120.00173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0542 -0.7517 -1.2423 5 6 2.3519 -2.1704 -0.6892 6 1 1.4457 -2.7751 -0.6564 7 7 3.3938 -2.8332 -1.4775 8 6 3.4964 -4.1771 -1.4644 9 8 2.7237 -4.8394 -0.7985 10 6 4.5432 -4.8432 -2.2570 11 6 4.7801 -6.1894 -2.3509 12 7 5.8191 -6.3315 -3.1741 13 7 6.2118 -5.1740 -3.5710 14 7 5.4852 -4.2463 -3.0533 15 1 5.5882 -3.2928 -3.1986 16 6 2.8568 -1.8487 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.7752 -0.3809 2.4663 19 8 1.0783 0.5793 2.7172 20 6 2.3565 -1.2036 3.5872 21 16 1.8373 -0.5101 5.1764 22 6 2.6359 -1.6322 6.2754 23 1 3.2275 -2.4452 5.8812 24 6 2.5039 -1.4719 7.6478 25 7 1.7817 -0.4819 8.1283 26 14 3.3512 -2.6611 8.8128 27 1 4.7097 -2.1553 9.1349 28 1 2.5579 -2.7793 10.0626 29 1 3.4594 -3.9941 8.1673 30 1 -0.3634 0.5207 0.8859 31 1 -0.3633 0.5069 -0.8939 32 1 -0.3633 -1.0277 0.0078 33 1 2.9647 -0.2857 -1.6190 34 1 1.2909 -0.7930 -2.0193 35 1 4.0099 -2.3050 -2.0088 36 1 4.2337 -6.9787 -1.8563 37 1 2.7088 -2.7060 1.3962 38 1 3.9096 -1.5675 0.7155 39 1 2.0019 -2.2310 3.5055 40 1 3.4444 -1.1885 3.5226 41 1 1.6891 -0.3701 9.0873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572386765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:20 Heat of formation + Delta-G solvation = 1.217619 kcal Electronic energy + Delta-G solvation = -26270.468755 eV Core-core repulsion = 22312.824297 eV Total energy + Delta-G solvation = -3957.644458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.45230 -41.58856 -40.52480 -38.62876 -35.80050 -34.61599 -34.54332 -33.39806 -32.66097 -30.80479 -30.22517 -27.69373 -26.94729 -25.86458 -24.34041 -23.59492 -22.32101 -21.97027 -20.62501 -20.26897 -19.60393 -18.29916 -17.89391 -17.47333 -17.41710 -16.91137 -16.73326 -16.62542 -16.03617 -15.73860 -15.69300 -15.29799 -14.97946 -14.69109 -14.52749 -14.35028 -14.13958 -13.76767 -13.35733 -13.23926 -13.19757 -13.10495 -12.90940 -12.62078 -12.50956 -12.41038 -12.22638 -11.86266 -11.76423 -11.72812 -11.47726 -11.16729 -10.98351 -10.72448 -10.39165 -10.32207 -9.76032 -8.70516 -8.37402 -6.15915 -0.24588 1.15167 1.19381 1.34978 1.40455 1.42710 1.52099 1.54097 1.69263 1.88592 2.12471 2.24728 2.96704 3.14983 3.25820 3.33473 3.43580 3.61441 3.79814 3.89007 3.94800 4.04816 4.08348 4.14109 4.20561 4.36997 4.40512 4.55527 4.68113 4.69643 4.84545 4.89806 4.91025 5.05424 5.20351 5.29871 5.38851 5.49416 5.66428 6.16923 6.18926 6.30366 6.84177 7.03868 7.09379 7.13618 8.71828 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002670 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.246663 B =10485.236314 C =12601.167484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 H 0.079 0.921 4 C -0.112 4.112 5 C 0.144 3.856 6 H 0.101 0.899 7 N -0.692 5.692 8 C 0.604 3.396 9 O -0.543 6.543 10 C -0.061 4.061 11 C 0.027 3.973 12 N -0.300 5.300 13 N -0.057 5.057 14 N -0.345 5.345 15 H 0.470 0.530 16 C 0.081 3.919 17 N -0.611 5.611 18 C 0.550 3.450 19 O -0.555 6.555 20 C -0.124 4.124 21 S -0.145 6.145 22 C -0.547 4.547 23 H 0.080 0.920 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.998 3.002 27 H -0.266 1.266 28 H -0.276 1.276 29 H -0.260 1.260 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.420 0.580 36 H 0.214 0.786 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -4.447 -29.121 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.097 0.903 4 C -0.150 4.150 5 C 0.038 3.962 6 H 0.119 0.881 7 N -0.345 5.345 8 C 0.388 3.612 9 O -0.418 6.418 10 C -0.196 4.196 11 C -0.134 4.134 12 N -0.164 5.164 13 N -0.039 5.039 14 N -0.076 5.076 15 H 0.321 0.679 16 C -0.043 4.043 17 N -0.347 5.347 18 C 0.338 3.662 19 O -0.433 6.433 20 C -0.275 4.275 21 S 0.083 5.917 22 C -0.695 4.695 23 H 0.098 0.902 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.819 3.181 27 H -0.191 1.191 28 H -0.201 1.201 29 H -0.184 1.184 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.258 0.742 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.103 -3.813 -28.971 29.852 hybrid contribution 0.445 -0.518 1.433 1.587 sum 6.549 -4.331 -27.539 28.636 Atomic orbital electron populations 1.22168 0.95019 1.02249 1.02797 1.21788 0.94839 0.96987 0.83786 0.90302 1.23027 1.04876 0.91248 0.95821 1.21970 0.90952 0.94684 0.88586 0.88129 1.45449 1.35140 1.05137 1.48805 1.16771 0.81954 0.82496 0.79942 1.90943 1.42872 1.65334 1.42641 1.22080 0.98655 0.94532 1.04324 1.24279 0.95627 0.95580 0.97873 1.75039 1.12541 1.15626 1.13194 1.78193 1.16103 0.92197 1.17409 1.45543 1.19936 1.12533 1.29603 0.67852 1.22892 0.96038 0.88627 0.96732 1.48358 1.51251 1.30950 1.04099 1.19621 0.79825 0.84046 0.82703 1.90683 1.39266 1.29846 1.83458 1.23335 1.04533 1.02774 0.96828 1.85498 1.68541 1.42152 0.95556 1.23169 1.36579 1.16038 0.93736 0.90229 1.26113 0.95765 0.97858 0.99266 1.70171 1.38843 1.31332 1.14258 0.84968 0.78095 0.78127 0.76890 1.19132 1.20133 1.18399 0.94714 0.88653 0.92548 0.86370 0.86280 0.74159 0.76911 0.91233 0.88918 0.88334 0.87835 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.06 71.98 0.65 -2.62 16 2 C 0.13 2.24 3.50 45.36 0.16 2.40 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -0.66 6.13 31.80 0.20 -0.46 16 5 C 0.14 1.49 3.37 46.39 0.16 1.65 16 6 H 0.10 1.46 7.63 -2.39 -0.02 1.44 16 7 N -0.69 -3.64 5.21 -439.39 -2.29 -5.93 16 8 C 0.60 7.34 7.81 86.60 0.68 8.02 16 9 O -0.54 -11.70 16.61 -4.11 -0.07 -11.77 16 10 C -0.06 -0.64 7.17 40.41 0.29 -0.35 16 11 C 0.03 0.38 11.87 84.18 1.00 1.38 16 12 N -0.30 -5.35 12.35 -57.50 -0.71 -6.06 16 13 N -0.06 -0.80 13.35 37.02 0.49 -0.30 16 14 N -0.35 -2.08 6.97 -48.52 -0.34 -2.42 16 15 H 0.47 -1.76 8.32 -219.90 -1.83 -3.59 16 16 C 0.08 1.41 6.39 86.86 0.55 1.97 16 17 N -0.61 -15.18 3.08 -787.97 -2.43 -17.61 16 18 C 0.55 20.56 7.65 87.66 0.67 21.23 16 19 O -0.55 -25.42 14.76 -3.01 -0.04 -25.46 16 20 C -0.12 -5.08 5.16 71.24 0.37 -4.71 16 21 S -0.14 -8.13 20.57 -56.49 -1.16 -9.29 16 22 C -0.55 -31.69 9.50 67.96 0.65 -31.04 16 23 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 24 C 0.01 0.86 5.49 84.86 0.47 1.32 16 25 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 26 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 30 H 0.03 1.01 6.74 -2.39 -0.02 0.99 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.12 -0.03 8.00 -2.39 -0.02 -0.05 16 34 H 0.12 0.26 7.83 -2.39 -0.02 0.24 16 35 H 0.42 -1.39 7.80 -92.71 -0.72 -2.11 16 36 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.07 1.50 7.48 -2.39 -0.02 1.49 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 3.84 7.85 -2.40 -0.02 3.82 16 40 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -89.18 366.61 0.14 -89.04 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -1.45 Total: 0.80 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.83 Total: -1.22 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -4.98 Total: -88.14 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.11 Total: -37.23 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -89.18 0.14 -89.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572386765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.255 kcal (2) G-P(sol) polarization free energy of solvation -89.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds