Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48499 * 109.47315 * 269.99949 * 3 2 1 5 5 H 1.48500 * 109.47212 * 30.00353 * 3 2 1 6 6 H 1.48506 * 109.47322 * 150.00075 * 3 2 1 7 7 C 1.38799 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00250 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00070 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46850 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00388 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99994 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00279 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84820 * 336.19884 * 14 13 11 16 16 C 1.53781 * 113.61563 * 107.50461 * 14 13 11 17 17 C 1.54049 * 87.08031 * 139.97721 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 C 1.52990 * 113.70090 * 220.05426 * 17 16 14 20 20 N 1.46497 * 109.47171 * 272.42414 * 19 17 16 21 21 C 1.34777 * 120.00242 * 179.97438 * 20 19 17 22 22 O 1.21557 * 120.00280 * 0.02562 * 21 20 19 23 23 C 1.47871 * 120.00124 * 179.97438 * 21 20 19 24 24 N 1.34546 * 126.04596 * 359.69024 * 23 21 20 25 25 C 1.30875 * 107.26948 * 179.89601 * 24 23 21 26 26 N 1.34594 * 107.62378 * 0.36483 * 25 24 23 27 27 H 0.96998 * 125.74528 * 179.72842 * 26 25 24 28 28 N 1.28851 * 108.49798 * 359.76990 * 26 25 24 29 29 C 1.53781 * 113.61552 * 205.00255 * 14 13 11 30 30 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46983 * 60.00387 * 10 9 7 32 32 H 1.08992 * 109.47058 * 300.00014 * 10 9 7 33 33 H 0.97006 * 119.99341 * 0.02562 * 13 11 10 34 34 H 1.09005 * 113.61471 * 254.53304 * 16 14 13 35 35 H 1.08996 * 113.61178 * 25.34646 * 16 14 13 36 36 H 1.09007 * 109.47036 * 32.41747 * 19 17 16 37 37 H 1.08994 * 109.47734 * 152.42153 * 19 17 16 38 38 H 0.97003 * 120.00176 * 359.97438 * 20 19 17 39 39 H 1.08001 * 126.19389 * 180.13680 * 25 24 23 40 40 H 1.09002 * 113.61445 * 334.56837 * 29 14 13 41 41 H 1.09002 * 113.61408 * 105.38567 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2325 -0.0021 12 8 6.3440 -2.2963 -0.0025 13 7 6.0457 -4.4947 -0.0016 14 6 7.4907 -4.7358 -0.0021 15 1 8.0592 -3.8991 -0.4083 16 6 8.0292 -5.2544 1.3417 17 6 8.9342 -6.1967 0.5255 18 1 9.8977 -5.7589 0.2644 19 6 9.0599 -7.5993 1.1235 20 7 10.1569 -7.6199 2.0942 21 6 10.4539 -8.7584 2.7515 22 8 9.8118 -9.7683 2.5387 23 6 11.5616 -8.7792 3.7309 24 7 12.3521 -7.7397 4.0543 25 6 13.2024 -8.1634 4.9544 26 7 12.9422 -9.4646 5.1802 27 1 13.4201 -10.0390 5.7987 28 7 11.9520 -9.8186 4.4356 29 6 7.8879 -6.0971 -0.5971 30 1 -0.4850 0.8400 0.0004 31 1 3.6434 -3.4318 -0.8907 32 1 3.6440 -3.4314 0.8892 33 1 5.4290 -5.2435 -0.0009 34 1 8.5793 -4.5046 1.9103 35 1 7.2815 -5.7749 1.9401 36 1 8.1282 -7.8663 1.6225 37 1 9.2647 -8.3163 0.3285 38 1 10.6696 -6.8141 2.2638 39 1 13.9757 -7.5764 5.4276 40 1 7.1019 -6.8493 -0.5294 41 1 8.3226 -6.0277 -1.5943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573149972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = 33.286784 kcal Electronic energy + Delta-G solvation = -24889.903113 eV Core-core repulsion = 20933.649278 eV Total energy + Delta-G solvation = -3956.253835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.03139 -40.37739 -39.57494 -38.22753 -35.11790 -34.09098 -33.16150 -32.42786 -31.97266 -29.65978 -28.15488 -25.99348 -25.61582 -24.85702 -23.49466 -22.55949 -21.02895 -20.48284 -19.99045 -19.39145 -17.81510 -17.66353 -16.93079 -16.70270 -16.48905 -16.07446 -15.75686 -15.41196 -15.13232 -14.95841 -14.88462 -14.24204 -13.90620 -13.71263 -13.37250 -12.79232 -12.76793 -12.76159 -12.62162 -12.38782 -11.93077 -11.54520 -11.31521 -11.24967 -11.12971 -11.04168 -10.99598 -10.72121 -10.62585 -10.51520 -10.33403 -9.84521 -9.49724 -9.46416 -9.00384 -8.91921 -8.49214 -6.90772 -6.27973 -3.99680 0.84918 1.52498 1.93546 2.63968 2.79049 2.91425 2.95471 3.32279 3.35741 3.51239 3.54281 3.67816 4.04798 4.17922 4.20163 4.33969 4.34415 4.45098 4.62223 4.75423 4.86795 5.11120 5.11735 5.29124 5.30837 5.39512 5.44285 5.48322 5.60326 5.64200 5.75255 5.76909 5.79708 5.95704 6.02825 6.08849 6.13654 6.60153 6.96738 7.40544 7.63271 7.74212 7.95055 8.42669 8.50212 9.18214 10.81270 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.001582 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.756150 B =17694.192875 C =18031.358888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.726 5.726 14 C 0.127 3.873 15 H 0.116 0.884 16 C -0.148 4.148 17 C -0.123 4.123 18 H 0.103 0.897 19 C 0.133 3.867 20 N -0.706 5.706 21 C 0.614 3.386 22 O -0.517 6.517 23 C 0.146 3.854 24 N -0.485 5.485 25 C 0.201 3.799 26 N -0.400 5.400 27 H 0.454 0.546 28 N -0.248 5.248 29 C -0.135 4.135 30 H 0.271 0.729 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.232 0.768 40 H 0.091 0.909 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.829 -19.818 8.087 35.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.379 5.379 14 C 0.021 3.979 15 H 0.134 0.866 16 C -0.187 4.187 17 C -0.143 4.143 18 H 0.121 0.879 19 C 0.010 3.990 20 N -0.359 5.359 21 C 0.395 3.605 22 O -0.390 6.390 23 C -0.135 4.135 24 N -0.211 5.211 25 C -0.097 4.097 26 N -0.123 5.123 27 H 0.301 0.699 28 N -0.088 5.088 29 C -0.174 4.174 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.235 0.765 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 29.011 -19.083 7.601 35.546 hybrid contribution -0.230 -0.538 0.764 0.962 sum 28.781 -19.621 8.365 35.823 Atomic orbital electron populations 1.69939 1.05918 1.27753 1.48089 1.24713 0.94447 0.98960 0.93181 0.86731 0.81895 0.83276 0.79922 1.19215 1.19957 1.15925 1.22326 0.88300 0.97542 1.58762 0.89394 1.84775 1.09257 1.00145 1.97429 1.23293 0.94139 1.04344 1.05820 1.20318 0.90548 0.82489 0.74844 1.90690 1.58777 1.42251 1.47761 1.45951 1.06979 1.07989 1.76996 1.22372 0.81976 0.97278 0.96290 0.86621 1.23656 0.98827 0.98779 0.97465 1.22672 0.99204 0.94612 0.97763 0.87929 1.21460 0.89538 0.96889 0.91108 1.45670 1.35716 1.12412 1.42054 1.16253 0.81028 0.83904 0.79301 1.90860 1.50491 1.33228 1.64406 1.23827 1.00823 0.86668 1.02139 1.71306 1.06489 1.29239 1.14082 1.26659 1.00956 0.84761 0.97310 1.45290 1.24085 1.11258 1.31699 0.69918 1.74385 1.02658 1.25444 1.06267 1.23332 0.98289 0.97332 0.98412 0.91954 0.88484 0.88456 0.76536 0.90656 0.89368 0.90657 0.90735 0.75197 0.75198 0.89093 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 10 C -0.13 -2.39 6.16 36.00 0.22 -2.17 16 11 C 0.53 9.19 7.85 -10.99 -0.09 9.10 16 12 O -0.52 -10.98 15.46 5.56 0.09 -10.89 16 13 N -0.73 -8.70 5.35 -53.02 -0.28 -8.99 16 14 C 0.13 1.26 4.24 -67.12 -0.28 0.98 16 15 H 0.12 1.37 7.46 -51.93 -0.39 0.98 16 16 C -0.15 -1.25 7.44 -25.78 -0.19 -1.44 16 17 C -0.12 -0.78 3.76 -89.67 -0.34 -1.12 16 18 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 19 C 0.13 0.97 5.52 -4.05 -0.02 0.94 16 20 N -0.71 -5.67 5.55 -61.25 -0.34 -6.01 16 21 C 0.61 6.68 7.83 -12.32 -0.10 6.58 16 22 O -0.52 -7.35 17.09 5.32 0.09 -7.25 16 23 C 0.15 1.42 7.96 -156.36 -1.24 0.17 16 24 N -0.48 -3.59 11.09 -12.36 -0.14 -3.72 16 25 C 0.20 0.66 13.14 -90.47 -1.19 -0.53 16 26 N -0.40 -1.47 6.93 29.57 0.21 -1.26 16 27 H 0.45 -0.33 8.96 -190.21 -1.71 -2.03 16 28 N -0.25 -2.21 12.30 32.07 0.39 -1.82 16 29 C -0.13 -0.92 7.39 -25.92 -0.19 -1.11 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 33 H 0.40 3.70 8.73 -40.82 -0.36 3.34 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.76 7.91 -51.93 -0.41 0.34 16 36 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.41 2.75 8.18 -40.82 -0.33 2.41 16 39 H 0.23 -0.46 8.06 -52.49 -0.42 -0.88 16 40 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -40.27 372.24 -10.07 -50.34 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.56 Total: -1.03 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.21 Total: -0.63 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.61 Total: -47.63 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.27 -10.07 -50.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573149972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.625 kcal (2) G-P(sol) polarization free energy of solvation -40.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds