Wall clock time and date at job start Tue Mar 31 2020 22:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48499 * 109.47315 * 269.99949 * 3 2 1 5 5 H 1.48500 * 109.47212 * 30.00353 * 3 2 1 6 6 H 1.48506 * 109.47322 * 150.00075 * 3 2 1 7 7 C 1.38799 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00250 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00070 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46850 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00388 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99994 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00279 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84820 * 336.19884 * 14 13 11 16 16 C 1.53781 * 113.61563 * 107.50461 * 14 13 11 17 17 C 1.54049 * 87.08031 * 139.97721 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 C 1.52990 * 113.70090 * 220.05426 * 17 16 14 20 20 N 1.46497 * 109.47171 * 272.42414 * 19 17 16 21 21 C 1.34777 * 120.00242 * 179.97438 * 20 19 17 22 22 O 1.21557 * 120.00280 * 0.02562 * 21 20 19 23 23 C 1.47871 * 120.00124 * 179.97438 * 21 20 19 24 24 N 1.34546 * 126.04596 * 359.69024 * 23 21 20 25 25 C 1.30875 * 107.26948 * 179.89601 * 24 23 21 26 26 N 1.34594 * 107.62378 * 0.36483 * 25 24 23 27 27 H 0.96998 * 125.74528 * 179.72842 * 26 25 24 28 28 N 1.28851 * 108.49798 * 359.76990 * 26 25 24 29 29 C 1.53781 * 113.61552 * 205.00255 * 14 13 11 30 30 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46983 * 60.00387 * 10 9 7 32 32 H 1.08992 * 109.47058 * 300.00014 * 10 9 7 33 33 H 0.97006 * 119.99341 * 0.02562 * 13 11 10 34 34 H 1.09005 * 113.61471 * 254.53304 * 16 14 13 35 35 H 1.08996 * 113.61178 * 25.34646 * 16 14 13 36 36 H 1.09007 * 109.47036 * 32.41747 * 19 17 16 37 37 H 1.08994 * 109.47734 * 152.42153 * 19 17 16 38 38 H 0.97003 * 120.00176 * 359.97438 * 20 19 17 39 39 H 1.08001 * 126.19389 * 180.13680 * 25 24 23 40 40 H 1.09002 * 113.61445 * 334.56837 * 29 14 13 41 41 H 1.09002 * 113.61408 * 105.38567 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2325 -0.0021 12 8 6.3440 -2.2963 -0.0025 13 7 6.0457 -4.4947 -0.0016 14 6 7.4907 -4.7358 -0.0021 15 1 8.0592 -3.8991 -0.4083 16 6 8.0292 -5.2544 1.3417 17 6 8.9342 -6.1967 0.5255 18 1 9.8977 -5.7589 0.2644 19 6 9.0599 -7.5993 1.1235 20 7 10.1569 -7.6199 2.0942 21 6 10.4539 -8.7584 2.7515 22 8 9.8118 -9.7683 2.5387 23 6 11.5616 -8.7792 3.7309 24 7 12.3521 -7.7397 4.0543 25 6 13.2024 -8.1634 4.9544 26 7 12.9422 -9.4646 5.1802 27 1 13.4201 -10.0390 5.7987 28 7 11.9520 -9.8186 4.4356 29 6 7.8879 -6.0971 -0.5971 30 1 -0.4850 0.8400 0.0004 31 1 3.6434 -3.4318 -0.8907 32 1 3.6440 -3.4314 0.8892 33 1 5.4290 -5.2435 -0.0009 34 1 8.5793 -4.5046 1.9103 35 1 7.2815 -5.7749 1.9401 36 1 8.1282 -7.8663 1.6225 37 1 9.2647 -8.3163 0.3285 38 1 10.6696 -6.8141 2.2638 39 1 13.9757 -7.5764 5.4276 40 1 7.1019 -6.8493 -0.5294 41 1 8.3226 -6.0277 -1.5943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573149972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:20 Heat of formation + Delta-G solvation = 1.359908 kcal Electronic energy + Delta-G solvation = -24891.287566 eV Core-core repulsion = 20933.649278 eV Total energy + Delta-G solvation = -3957.638288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46839 -41.24675 -40.51546 -39.28746 -35.92805 -34.69463 -34.64353 -34.15486 -32.45239 -30.98370 -29.00521 -27.84432 -26.63310 -25.52829 -23.86400 -23.37038 -21.70578 -21.67334 -20.69414 -19.93584 -19.70219 -18.30506 -17.83490 -17.45364 -17.42458 -17.15952 -16.96105 -16.46393 -16.42956 -15.96069 -15.69364 -15.61106 -15.05431 -14.88857 -14.65016 -14.52556 -13.76219 -13.37387 -13.33707 -13.27628 -13.20918 -13.02237 -12.90974 -12.69630 -12.21416 -11.85037 -11.77261 -11.75719 -11.61450 -11.38447 -11.36224 -11.16334 -10.90323 -10.84165 -10.52689 -10.16011 -9.98082 -8.98424 -8.50872 -6.21625 0.27439 1.00817 1.13377 1.32210 1.47805 1.52421 1.58215 1.58863 2.21452 2.22433 2.25458 2.33435 2.73645 2.87399 3.08787 3.50867 3.52838 3.70648 3.80042 3.88073 3.95186 4.05066 4.26010 4.28724 4.48144 4.49710 4.70741 4.82724 4.87035 4.89556 4.91715 5.07225 5.14351 5.22740 5.25196 5.39866 5.65713 5.71224 5.92115 6.11898 6.33748 6.53141 6.91642 6.94299 7.07810 7.24481 8.61546 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.001582 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.756150 B =17694.192875 C =18031.358888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.176 6.176 10 C -0.113 4.113 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.702 5.702 14 C 0.111 3.889 15 H 0.098 0.902 16 C -0.147 4.147 17 C -0.104 4.104 18 H 0.117 0.883 19 C 0.134 3.866 20 N -0.693 5.693 21 C 0.608 3.392 22 O -0.563 6.563 23 C 0.120 3.880 24 N -0.510 5.510 25 C 0.222 3.778 26 N -0.384 5.384 27 H 0.472 0.528 28 N -0.282 5.282 29 C -0.120 4.120 30 H 0.277 0.723 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.416 0.584 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.420 0.580 39 H 0.285 0.715 40 H 0.105 0.895 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.415 -20.259 8.637 38.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.051 5.949 10 C -0.264 4.264 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.354 5.354 14 C 0.006 3.994 15 H 0.116 0.884 16 C -0.185 4.185 17 C -0.123 4.123 18 H 0.135 0.865 19 C 0.011 3.989 20 N -0.345 5.345 21 C 0.391 3.609 22 O -0.439 6.439 23 C -0.160 4.160 24 N -0.237 5.237 25 C -0.075 4.075 26 N -0.110 5.110 27 H 0.323 0.677 28 N -0.123 5.123 29 C -0.159 4.159 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.257 0.743 39 H 0.300 0.700 40 H 0.123 0.877 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 31.622 -19.566 8.167 38.072 hybrid contribution -0.927 -0.559 0.664 1.270 sum 30.695 -20.125 8.830 37.751 Atomic orbital electron populations 1.70019 1.07330 1.29018 1.49157 1.25574 0.95273 1.02285 0.92857 0.85854 0.80670 0.79531 0.80233 1.18655 1.18349 1.16045 1.22480 0.90364 0.96680 1.58279 0.92051 1.84682 1.06295 1.06350 1.97585 1.23300 0.96258 0.99510 1.07369 1.19961 0.89213 0.83705 0.74976 1.90679 1.59259 1.43893 1.50379 1.45775 1.08477 1.06554 1.74636 1.22622 0.80112 0.98455 0.98169 0.88351 1.23637 0.99168 0.98986 0.96736 1.22545 0.99512 0.93497 0.96744 0.86527 1.21481 0.89070 0.97359 0.90964 1.45634 1.35486 1.11994 1.41353 1.16550 0.81090 0.83803 0.79463 1.90818 1.52257 1.34721 1.66084 1.23642 1.01573 0.87760 1.02975 1.71274 1.07405 1.29191 1.15842 1.27650 1.00130 0.84426 0.95282 1.45280 1.22803 1.11956 1.30924 0.67717 1.74278 1.04443 1.26267 1.07331 1.23299 0.98487 0.95143 0.98948 0.91383 0.86884 0.86991 0.74620 0.91313 0.89260 0.91240 0.90466 0.74302 0.70018 0.87696 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 2 C 0.05 2.68 5.50 84.86 0.47 3.15 16 3 Si 0.92 45.10 27.74 68.60 1.90 47.00 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 9 S -0.18 -8.88 18.55 -56.49 -1.05 -9.92 16 10 C -0.11 -4.23 6.16 71.23 0.44 -3.79 16 11 C 0.54 17.91 7.85 87.66 0.69 18.60 16 12 O -0.56 -23.58 15.46 -3.03 -0.05 -23.63 16 13 N -0.70 -15.46 5.35 -440.04 -2.36 -17.82 16 14 C 0.11 2.02 4.24 45.52 0.19 2.21 16 15 H 0.10 2.22 7.46 -2.39 -0.02 2.20 16 16 C -0.15 -2.21 7.44 31.21 0.23 -1.98 16 17 C -0.10 -1.08 3.76 -10.18 -0.04 -1.12 16 18 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 19 C 0.13 1.75 5.52 86.38 0.48 2.23 16 20 N -0.69 -10.61 5.55 -465.96 -2.59 -13.20 16 21 C 0.61 13.36 7.83 86.79 0.68 14.04 16 22 O -0.56 -16.48 17.09 -3.90 -0.07 -16.54 16 23 C 0.12 2.30 7.96 137.13 1.09 3.39 16 24 N -0.51 -6.74 11.09 -193.02 -2.14 -8.88 16 25 C 0.22 0.81 13.14 180.30 2.37 3.18 16 26 N -0.38 -2.07 6.93 -60.37 -0.42 -2.49 16 27 H 0.47 -1.74 8.96 -219.80 -1.97 -3.71 16 28 N -0.28 -4.89 12.30 -52.44 -0.65 -5.54 16 29 C -0.12 -1.30 7.39 31.12 0.23 -1.07 16 30 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 33 H 0.42 6.58 8.73 -92.70 -0.81 5.77 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 35 H 0.09 1.36 7.91 -2.39 -0.02 1.34 16 36 H 0.07 1.03 7.85 -2.38 -0.02 1.01 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.42 5.11 8.18 -92.71 -0.76 4.35 16 39 H 0.28 -2.49 8.06 -2.91 -0.02 -2.51 16 40 H 0.10 0.91 8.08 -2.39 -0.02 0.89 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -90.73 372.24 -2.06 -92.79 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -2.46 Total: 5.50 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 7.51 Total: 8.49 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -7.85 Total: -103.68 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.11 Total: -40.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -90.73 -2.06 -92.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573149972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.152 kcal (2) G-P(sol) polarization free energy of solvation -90.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds