Wall clock time and date at job start Tue Mar 31 2020 23:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86956 * 2 1 4 4 C 1.54321 * 109.88204 * 238.98662 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21284 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99658 * 179.97438 * 7 6 4 10 10 S 1.81002 * 109.47123 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99936 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.38792 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31640 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00254 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47070 * 120.00282 * 15 13 11 18 18 H 1.48499 * 109.47227 * 239.99934 * 15 13 11 19 19 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 20 20 C 1.55392 * 101.36576 * 35.49711 * 19 4 2 21 21 N 1.47019 * 109.88144 * 121.17412 * 2 1 3 22 22 C 1.34778 * 125.65277 * 298.39270 * 21 2 1 23 23 O 1.21560 * 119.99252 * 0.02562 * 22 21 2 24 24 C 1.47861 * 120.00236 * 179.97438 * 22 21 2 25 25 N 1.34549 * 126.04924 * 179.97438 * 24 22 21 26 26 C 1.30874 * 107.27165 * 180.02562 * 25 24 22 27 27 N 1.34583 * 107.62198 * 359.97438 * 26 25 24 28 28 H 0.97006 * 125.74504 * 179.97438 * 27 26 25 29 29 N 1.28852 * 108.50647 * 359.73617 * 27 26 25 30 30 H 1.09000 * 109.47185 * 181.01334 * 1 2 3 31 31 H 1.08996 * 109.47557 * 301.01377 * 1 2 3 32 32 H 1.09002 * 109.47281 * 61.01651 * 1 2 3 33 33 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 34 34 H 1.09003 * 109.47094 * 299.99691 * 9 7 6 35 35 H 1.08995 * 109.47537 * 59.99285 * 9 7 6 36 36 H 0.96998 * 120.00060 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00537 * 153.66574 * 19 4 2 38 38 H 1.09001 * 111.00741 * 277.51995 * 19 4 2 39 39 H 1.08999 * 110.34334 * 204.17153 * 20 19 4 40 40 H 1.08999 * 110.35427 * 81.86509 * 20 19 4 41 41 H 1.07995 * 126.18809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4516 0.1993 -2.2889 7 6 2.5006 -0.1989 -3.5755 8 8 2.2168 -1.3411 -3.8682 9 6 2.9082 0.7754 -4.6506 10 16 2.8774 -0.0537 -6.2593 11 6 3.3796 1.2773 -7.2991 12 1 3.5971 2.2446 -6.8709 13 6 3.4968 1.0822 -8.6682 14 7 3.2322 -0.0970 -9.1901 15 14 4.0299 2.4930 -9.7704 16 1 4.2661 3.7044 -8.9447 17 1 5.2832 2.1234 -10.4760 18 1 2.9649 2.7724 -10.7668 19 6 3.2897 -1.5130 -0.6990 20 6 2.8145 -1.8804 0.7341 21 7 2.0299 -0.7157 1.1829 22 6 1.8074 -0.3655 2.4652 23 8 1.1413 0.6191 2.7194 24 6 2.3724 -1.1794 3.5627 25 7 2.2279 -0.9429 4.8793 26 6 2.8750 -1.8851 5.5167 27 7 3.4174 -2.7021 4.5950 28 1 3.9537 -3.4888 4.7805 29 7 3.1001 -2.2661 3.4247 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8990 33 1 2.6787 1.1127 -2.0547 34 1 2.2142 1.6159 -4.6613 35 1 3.9157 1.1388 -4.4487 36 1 3.3137 -0.2332 -10.1470 37 1 3.4871 -2.4074 -1.2900 38 1 4.1668 -0.8667 -0.6664 39 1 3.6716 -2.0356 1.3894 40 1 2.1886 -2.7724 0.7090 41 1 2.9579 -1.9888 6.5885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573444558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:41 Heat of formation + Delta-G solvation = 30.653116 kcal Electronic energy + Delta-G solvation = -26169.874667 eV Core-core repulsion = 22213.506628 eV Total energy + Delta-G solvation = -3956.368039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.96469 -40.61375 -39.13636 -37.55787 -34.25987 -33.90599 -32.44944 -32.42131 -31.46234 -30.84847 -28.90608 -25.65938 -25.42353 -25.25563 -23.47802 -22.70403 -21.40496 -20.54987 -19.81582 -18.85585 -17.86539 -17.63042 -17.04275 -16.69699 -16.15452 -15.86191 -15.40606 -15.18954 -14.89053 -14.80958 -14.32130 -14.01976 -13.84269 -13.43970 -13.31717 -12.95544 -12.89547 -12.57975 -12.50950 -12.14157 -11.98619 -11.73435 -11.34155 -11.20417 -11.07489 -11.04899 -11.02255 -10.88334 -10.76176 -10.45524 -10.23886 -9.81634 -9.46699 -9.09189 -9.04934 -8.93087 -8.24948 -6.51139 -6.22845 -3.93326 0.86918 1.65160 2.01787 2.35639 2.97796 3.02119 3.02711 3.21270 3.27924 3.32434 3.61258 3.70266 3.96127 4.14287 4.19542 4.29097 4.47873 4.79837 4.90717 4.94966 5.07627 5.12618 5.15510 5.33367 5.38475 5.50567 5.54471 5.63908 5.71812 5.75613 5.82711 5.87414 5.92980 6.02026 6.08956 6.13039 6.20266 6.55459 7.02568 7.41444 7.59167 7.62716 7.80127 8.34676 8.54595 9.22914 10.84609 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.001920 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.860466 B =14577.558855 C =14844.960019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.086 0.914 4 C 0.141 3.859 5 H 0.109 0.891 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.147 4.147 20 C 0.101 3.899 21 N -0.599 5.599 22 C 0.629 3.371 23 O -0.507 6.507 24 C 0.157 3.843 25 N -0.462 5.462 26 C 0.198 3.802 27 N -0.400 5.400 28 H 0.452 0.548 29 N -0.272 5.272 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -5.582 29.965 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.104 0.896 4 C 0.035 3.965 5 H 0.127 0.873 6 N -0.384 5.384 7 C 0.323 3.677 8 O -0.388 6.388 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.092 0.908 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.186 4.186 20 C -0.022 4.022 21 N -0.334 5.334 22 C 0.412 3.588 23 O -0.378 6.378 24 C -0.123 4.123 25 N -0.186 5.186 26 C -0.100 4.100 27 N -0.123 5.123 28 H 0.299 0.701 29 N -0.113 5.113 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.428 -6.861 29.005 29.809 hybrid contribution 1.303 1.938 0.268 2.351 sum 1.731 -4.923 29.274 29.735 Atomic orbital electron populations 1.22162 0.93545 1.02926 1.03571 1.21751 0.95445 0.96384 0.83300 0.89625 1.21925 0.96971 0.91386 0.86239 0.87313 1.45955 1.71727 1.14452 1.06294 1.20318 0.76230 0.88905 0.82281 1.90705 1.46745 1.19668 1.81660 1.23538 1.04233 1.01872 1.00806 1.85386 1.89340 1.16786 0.91797 1.22911 1.53032 0.98164 0.94204 0.90843 1.24995 0.94907 0.96557 0.97160 1.70029 1.45797 1.21763 1.12706 0.86114 0.78327 0.81135 0.79906 1.19605 1.20588 1.20559 1.23370 0.98402 1.02205 0.94607 1.22657 0.96064 0.87998 0.95511 1.48143 1.52277 1.28993 1.03949 1.15821 0.80242 0.83162 0.79540 1.90845 1.38574 1.25888 1.82506 1.23726 1.01616 0.94379 0.92614 1.71322 1.20549 1.23741 1.03012 1.26773 0.95350 0.88545 0.99323 1.45234 1.39012 1.24479 1.03553 0.70087 1.74407 1.16744 1.13443 1.06739 0.92068 0.90837 0.90844 0.76545 0.89082 0.89136 0.92237 0.88659 0.90041 0.88675 0.90692 0.75240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.09 37.16 0.34 -1.39 16 2 C 0.13 1.40 3.21 -66.96 -0.21 1.19 16 3 H 0.09 0.87 7.70 -51.93 -0.40 0.47 16 4 C 0.14 1.57 2.79 -66.09 -0.18 1.39 16 5 H 0.11 1.37 7.33 -51.93 -0.38 0.99 16 6 N -0.73 -9.06 5.19 -52.03 -0.27 -9.33 16 7 C 0.54 9.39 7.85 -10.99 -0.09 9.30 16 8 O -0.51 -10.95 15.55 5.55 0.09 -10.87 16 9 C -0.15 -2.99 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.53 -15.07 9.50 30.94 0.29 -14.77 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.15 -1.43 6.80 -24.32 -0.17 -1.60 16 20 C 0.10 0.88 6.15 -2.26 -0.01 0.87 16 21 N -0.60 -6.35 3.07 -163.81 -0.50 -6.86 16 22 C 0.63 7.97 7.65 -12.32 -0.09 7.88 16 23 O -0.51 -7.96 16.14 5.31 0.09 -7.87 16 24 C 0.16 1.72 7.81 -156.36 -1.22 0.50 16 25 N -0.46 -4.75 11.41 -12.37 -0.14 -4.89 16 26 C 0.20 0.90 13.14 -90.48 -1.19 -0.29 16 27 N -0.40 -1.52 6.93 29.56 0.20 -1.32 16 28 H 0.45 -0.28 8.96 -190.20 -1.71 -1.99 16 29 N -0.27 -2.15 9.39 32.07 0.30 -1.85 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.94 8.34 -40.82 -0.34 3.60 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.78 6.19 -51.93 -0.32 0.46 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.23 -0.19 8.06 -52.49 -0.42 -0.61 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -39.41 364.57 -10.09 -49.49 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.43 Total: -1.54 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.41 Total: 2.28 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.33 Total: -49.46 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.41 -10.09 -49.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573444558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.145 kcal (2) G-P(sol) polarization free energy of solvation -39.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds