Wall clock time and date at job start Tue Mar 31 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86956 * 2 1 4 4 C 1.54321 * 109.88204 * 238.98662 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21284 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99658 * 179.97438 * 7 6 4 10 10 S 1.81002 * 109.47123 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99936 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.38792 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31640 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00254 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47379 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47070 * 120.00282 * 15 13 11 18 18 H 1.48499 * 109.47227 * 239.99934 * 15 13 11 19 19 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 20 20 C 1.55392 * 101.36576 * 35.49711 * 19 4 2 21 21 N 1.47019 * 109.88144 * 121.17412 * 2 1 3 22 22 C 1.34778 * 125.65277 * 298.39270 * 21 2 1 23 23 O 1.21560 * 119.99252 * 0.02562 * 22 21 2 24 24 C 1.47861 * 120.00236 * 179.97438 * 22 21 2 25 25 N 1.34549 * 126.04924 * 179.97438 * 24 22 21 26 26 C 1.30874 * 107.27165 * 180.02562 * 25 24 22 27 27 N 1.34583 * 107.62198 * 359.97438 * 26 25 24 28 28 H 0.97006 * 125.74504 * 179.97438 * 27 26 25 29 29 N 1.28852 * 108.50647 * 359.73617 * 27 26 25 30 30 H 1.09000 * 109.47185 * 181.01334 * 1 2 3 31 31 H 1.08996 * 109.47557 * 301.01377 * 1 2 3 32 32 H 1.09002 * 109.47281 * 61.01651 * 1 2 3 33 33 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 34 34 H 1.09003 * 109.47094 * 299.99691 * 9 7 6 35 35 H 1.08995 * 109.47537 * 59.99285 * 9 7 6 36 36 H 0.96998 * 120.00060 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00537 * 153.66574 * 19 4 2 38 38 H 1.09001 * 111.00741 * 277.51995 * 19 4 2 39 39 H 1.08999 * 110.34334 * 204.17153 * 20 19 4 40 40 H 1.08999 * 110.35427 * 81.86509 * 20 19 4 41 41 H 1.07995 * 126.18809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4516 0.1993 -2.2889 7 6 2.5006 -0.1989 -3.5755 8 8 2.2168 -1.3411 -3.8682 9 6 2.9082 0.7754 -4.6506 10 16 2.8774 -0.0537 -6.2593 11 6 3.3796 1.2773 -7.2991 12 1 3.5971 2.2446 -6.8709 13 6 3.4968 1.0822 -8.6682 14 7 3.2322 -0.0970 -9.1901 15 14 4.0299 2.4930 -9.7704 16 1 4.2661 3.7044 -8.9447 17 1 5.2832 2.1234 -10.4760 18 1 2.9649 2.7724 -10.7668 19 6 3.2897 -1.5130 -0.6990 20 6 2.8145 -1.8804 0.7341 21 7 2.0299 -0.7157 1.1829 22 6 1.8074 -0.3655 2.4652 23 8 1.1413 0.6191 2.7194 24 6 2.3724 -1.1794 3.5627 25 7 2.2279 -0.9429 4.8793 26 6 2.8750 -1.8851 5.5167 27 7 3.4174 -2.7021 4.5950 28 1 3.9537 -3.4888 4.7805 29 7 3.1001 -2.2661 3.4247 30 1 -0.3633 -1.0275 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8990 33 1 2.6787 1.1127 -2.0547 34 1 2.2142 1.6159 -4.6613 35 1 3.9157 1.1388 -4.4487 36 1 3.3137 -0.2332 -10.1470 37 1 3.4871 -2.4074 -1.2900 38 1 4.1668 -0.8667 -0.6664 39 1 3.6716 -2.0356 1.3894 40 1 2.1886 -2.7724 0.7090 41 1 2.9579 -1.9888 6.5885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573444558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:40 Heat of formation + Delta-G solvation = 1.092753 kcal Electronic energy + Delta-G solvation = -26171.156501 eV Core-core repulsion = 22213.506628 eV Total energy + Delta-G solvation = -3957.649873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.48183 -41.57724 -40.38775 -38.61383 -35.41018 -34.56734 -34.46059 -33.22452 -32.31706 -31.78835 -30.24325 -27.67481 -26.39486 -26.12784 -23.95588 -23.49708 -22.34837 -21.75074 -20.58497 -19.78938 -19.41528 -18.47180 -18.04535 -17.57209 -17.26125 -16.92362 -16.86551 -16.36124 -16.24301 -15.83548 -15.66785 -15.11386 -14.84821 -14.77698 -14.44927 -14.27757 -13.95871 -13.70720 -13.38051 -13.34143 -13.14110 -12.90981 -12.86222 -12.62288 -12.56722 -12.30417 -11.88398 -11.78985 -11.69244 -11.56241 -11.36994 -11.14521 -10.95034 -10.77215 -10.24959 -10.14129 -9.87836 -8.63626 -8.33669 -6.10551 0.22307 1.13617 1.22478 1.36751 1.41971 1.50346 1.60194 1.61941 1.92275 2.18635 2.27127 2.32455 2.95803 3.00688 3.30052 3.33985 3.45031 3.56570 3.89606 3.93370 4.00950 4.11670 4.16881 4.25257 4.34372 4.52552 4.55455 4.65933 4.71260 4.87123 4.88282 4.98899 5.05077 5.14407 5.19223 5.28512 5.44088 5.45310 5.94902 6.18416 6.21615 6.46815 6.76339 7.06556 7.08335 7.22741 8.75597 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.001920 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.860466 B =14577.558855 C =14844.960019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.091 0.909 4 C 0.143 3.857 5 H 0.096 0.904 6 N -0.705 5.705 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.140 4.140 20 C 0.109 3.891 21 N -0.595 5.595 22 C 0.624 3.376 23 O -0.550 6.550 24 C 0.125 3.875 25 N -0.515 5.515 26 C 0.221 3.779 27 N -0.379 5.379 28 H 0.473 0.527 29 N -0.270 5.270 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -5.062 31.912 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.109 0.891 4 C 0.037 3.963 5 H 0.114 0.886 6 N -0.359 5.359 7 C 0.329 3.671 8 O -0.434 6.434 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.179 4.179 20 C -0.014 4.014 21 N -0.329 5.329 22 C 0.410 3.590 23 O -0.425 6.425 24 C -0.154 4.154 25 N -0.240 5.240 26 C -0.076 4.076 27 N -0.105 5.105 28 H 0.325 0.675 29 N -0.113 5.113 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 1.868 -6.356 31.001 31.701 hybrid contribution 0.888 1.689 -0.126 1.913 sum 2.756 -4.667 30.875 31.347 Atomic orbital electron populations 1.22100 0.93683 1.02808 1.03090 1.21677 0.95282 0.96565 0.82985 0.89074 1.21943 0.97578 0.91035 0.85792 0.88580 1.45646 1.69926 1.15510 1.04809 1.19954 0.76066 0.87807 0.83322 1.90700 1.49018 1.21199 1.82483 1.23383 1.06101 1.01862 0.96917 1.85530 1.89704 1.19544 0.97164 1.23247 1.52843 0.98407 0.94836 0.89963 1.26097 0.94731 0.99438 0.98878 1.70185 1.47101 1.24241 1.13193 0.84929 0.77902 0.77676 0.77595 1.18115 1.19964 1.20028 1.23313 0.97784 1.01884 0.94918 1.22688 0.96341 0.87516 0.94817 1.48157 1.51946 1.29237 1.03553 1.16150 0.79717 0.82902 0.80278 1.90804 1.40600 1.27801 1.83248 1.23382 1.03777 0.95663 0.92586 1.71251 1.23044 1.26580 1.03168 1.27651 0.92603 0.86412 1.00930 1.45261 1.38143 1.24712 1.02406 0.67513 1.74281 1.16029 1.12418 1.08616 0.92009 0.92220 0.90350 0.74612 0.87228 0.87112 0.92028 0.89066 0.89364 0.87598 0.89937 0.70191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.09 71.98 0.65 -2.69 16 2 C 0.14 2.79 3.21 45.34 0.15 2.93 16 3 H 0.09 1.76 7.70 -2.39 -0.02 1.74 16 4 C 0.14 3.04 2.79 46.18 0.13 3.17 16 5 H 0.10 2.40 7.33 -2.39 -0.02 2.38 16 6 N -0.70 -16.45 5.19 -436.91 -2.27 -18.72 16 7 C 0.54 18.60 7.85 87.66 0.69 19.29 16 8 O -0.56 -23.97 15.55 -3.04 -0.05 -24.02 16 9 C -0.13 -4.97 6.16 71.24 0.44 -4.54 16 10 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 11 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.75 5.49 84.85 0.47 1.22 16 14 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 15 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.14 -2.54 6.80 32.16 0.22 -2.32 16 20 C 0.11 1.76 6.15 87.02 0.54 2.30 16 21 N -0.60 -12.29 3.07 -790.44 -2.42 -14.71 16 22 C 0.62 15.92 7.65 86.79 0.66 16.59 16 23 O -0.55 -17.84 16.14 -3.90 -0.06 -17.90 16 24 C 0.13 2.65 7.81 137.12 1.07 3.72 16 25 N -0.51 -10.02 11.41 -193.04 -2.20 -12.22 16 26 C 0.22 1.34 13.14 180.30 2.37 3.71 16 27 N -0.38 -1.76 6.93 -60.38 -0.42 -2.18 16 28 H 0.47 -2.30 8.96 -219.79 -1.97 -4.27 16 29 N -0.27 -3.76 9.39 -52.44 -0.49 -4.26 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.45 6.90 -2.39 -0.02 1.43 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 7.22 8.34 -92.71 -0.77 6.45 16 34 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.54 6.19 -2.39 -0.01 1.53 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.28 -1.76 8.06 -2.91 -0.02 -1.78 16 Total: -1.00 -89.79 364.57 -0.38 -90.17 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -1.64 Total: 9.43 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 8.02 Total: 13.26 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -7.52 Total: -107.25 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.11 Total: -41.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -89.79 -0.38 -90.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573444558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.259 kcal (2) G-P(sol) polarization free energy of solvation -89.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds