Wall clock time and date at job start Tue Mar 31 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47516 * 239.99793 * 3 2 1 5 5 H 1.48501 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46988 * 119.99438 * 3 2 1 7 7 C 1.38801 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99908 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99845 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47071 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.47589 * 295.00690 * 15 14 13 17 17 N 1.46500 * 109.47003 * 55.00255 * 15 14 13 18 18 C 1.34773 * 120.00509 * 204.99732 * 17 15 14 19 19 O 1.21620 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.47230 * 120.00479 * 180.02562 * 18 17 15 21 21 C 1.37011 * 127.19122 * 180.02562 * 20 18 17 22 22 N 1.33316 * 106.37221 * 179.97438 * 21 20 18 23 23 N 1.28512 * 109.44164 * 359.97438 * 22 21 20 24 24 N 1.28716 * 110.63892 * 359.71347 * 23 22 21 25 25 H 0.96996 * 126.04126 * 180.29967 * 24 23 22 26 26 C 1.52996 * 109.47215 * 175.00179 * 15 14 13 27 27 C 1.53002 * 117.49888 * 111.25646 * 26 15 14 28 28 C 1.53000 * 117.50107 * 179.91408 * 26 15 14 29 29 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46745 * 59.99913 * 10 9 7 31 31 H 1.08996 * 109.46878 * 300.00346 * 10 9 7 32 32 H 0.96999 * 120.00109 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.46694 * 60.00670 * 14 13 11 34 34 H 1.08996 * 109.47259 * 300.00660 * 14 13 11 35 35 H 0.97006 * 119.99923 * 24.99965 * 17 15 14 36 36 H 1.07995 * 126.81210 * 359.97438 * 21 20 18 37 37 H 1.09002 * 115.54951 * 325.58620 * 26 15 14 38 38 H 1.09000 * 117.49996 * 215.00804 * 27 26 15 39 39 H 1.08999 * 117.49664 * 0.02562 * 27 26 15 40 40 H 1.09008 * 117.49673 * 359.97438 * 28 26 15 41 41 H 1.08999 * 117.49959 * 144.99502 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3306 -7.7151 0.0009 15 6 3.5027 -8.6985 0.0007 16 1 4.0597 -8.5999 -0.9309 17 7 4.3867 -8.4048 1.1315 18 6 5.6867 -8.7564 1.0797 19 8 6.1261 -9.3173 0.0940 20 6 6.5749 -8.4618 2.2163 21 6 7.9102 -8.7506 2.3205 22 7 8.2993 -8.3034 3.5146 23 7 7.2973 -7.7737 4.1203 24 7 6.2405 -7.8346 3.3880 25 1 5.3620 -7.4986 3.6248 26 6 2.9698 -10.1270 0.1277 27 6 3.1125 -11.0449 -1.0881 28 6 3.9935 -11.2640 0.1443 29 1 -0.4851 0.8400 -0.0004 30 1 3.1245 -3.7312 0.8895 31 1 3.1245 -3.7312 -0.8905 32 1 3.8011 -6.1834 -0.0006 33 1 1.7212 -7.8755 -0.8885 34 1 1.7229 -7.8747 0.8915 35 1 4.0363 -7.9572 1.9175 36 1 8.5253 -9.2429 1.5819 37 1 2.0784 -10.2432 0.7442 38 1 2.3150 -11.7649 -1.2716 39 1 3.5864 -10.6311 -1.9782 40 1 5.0466 -10.9943 0.0644 41 1 3.7756 -12.1282 0.7718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578117062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:41 Heat of formation + Delta-G solvation = 49.840768 kcal Electronic energy + Delta-G solvation = -26110.625433 eV Core-core repulsion = 22155.089433 eV Total energy + Delta-G solvation = -3955.536000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.84533 -40.70623 -39.25621 -37.79033 -35.59449 -34.37027 -33.56548 -32.49642 -31.94399 -30.46572 -28.49266 -25.58309 -25.08247 -23.76701 -23.23281 -22.65979 -21.80358 -21.08744 -20.41196 -19.77420 -18.01051 -17.23753 -17.16015 -16.92662 -16.48437 -16.16728 -15.83666 -15.36841 -15.21505 -14.86390 -14.77646 -14.54565 -14.20759 -13.86935 -13.35494 -13.14555 -12.72379 -12.67221 -12.47454 -12.22654 -11.86909 -11.82946 -11.73321 -11.26425 -11.11809 -11.08879 -10.95549 -10.83910 -10.69864 -10.54551 -10.04851 -9.90519 -9.75287 -9.56677 -9.17407 -9.10455 -8.33914 -6.58852 -6.28350 -4.00051 0.34614 1.80331 1.89632 2.24310 2.48362 2.85285 2.91687 3.19058 3.22119 3.25029 3.44036 3.56243 3.79184 4.05200 4.13922 4.15249 4.37669 4.46174 4.61741 4.65113 4.67601 4.79869 4.97936 5.03232 5.07040 5.25654 5.36786 5.43799 5.47506 5.56686 5.61332 5.69783 5.75494 5.77027 5.93790 6.01337 6.03913 6.34094 6.67050 7.37810 7.45493 7.52779 7.76083 8.28047 8.40825 9.17061 10.78953 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.002612 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.162100 B =10715.216096 C =12721.063422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.743 5.743 14 C 0.116 3.884 15 C 0.168 3.832 16 H 0.103 0.897 17 N -0.718 5.718 18 C 0.601 3.399 19 O -0.507 6.507 20 C -0.070 4.070 21 C 0.037 3.963 22 N -0.270 5.270 23 N -0.040 5.040 24 N -0.372 5.372 25 H 0.452 0.548 26 C -0.174 4.174 27 C -0.165 4.165 28 C -0.180 4.180 29 H 0.270 0.730 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.205 0.795 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -22.419 3.000 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.398 5.398 14 C -0.008 4.008 15 C 0.064 3.936 16 H 0.121 0.879 17 N -0.369 5.369 18 C 0.385 3.615 19 O -0.381 6.381 20 C -0.205 4.205 21 C -0.123 4.123 22 N -0.135 5.135 23 N -0.022 5.022 24 N -0.100 5.100 25 H 0.299 0.701 26 C -0.194 4.194 27 C -0.202 4.202 28 C -0.217 4.217 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.222 0.778 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.788 -22.631 3.552 24.912 hybrid contribution 1.120 1.441 -0.395 1.867 sum 10.907 -21.190 3.157 24.040 Atomic orbital electron populations 1.69996 1.05961 1.27684 1.46592 1.24989 0.95033 0.99053 0.94409 0.86224 0.79258 0.81181 0.78853 1.19887 1.20750 1.19918 1.22817 0.94858 0.91617 1.59347 0.90976 1.85399 1.04641 0.96330 1.96743 1.23539 1.06760 0.95288 1.04933 1.20344 0.86479 0.86240 0.75057 1.90723 1.15265 1.85533 1.47058 1.46021 1.10046 1.05214 1.78544 1.21552 0.94800 0.80405 1.04080 1.20909 0.90193 0.92546 0.89980 0.87885 1.46002 1.08736 1.61046 1.21123 1.16705 0.81146 0.78759 0.84911 1.90832 1.75002 1.40994 1.31255 1.22337 0.97850 1.09180 0.91105 1.23955 0.91649 1.00534 0.96167 1.75049 1.20312 1.12050 1.06039 1.78290 0.89150 1.16582 1.18227 1.45653 1.13271 1.39340 1.11721 0.70107 1.22567 1.01993 0.90594 1.04229 1.22964 1.02765 1.02005 0.92475 1.23287 0.98541 0.98813 1.01084 0.92046 0.89333 0.89150 0.76835 0.89337 0.90692 0.76677 0.77815 0.87133 0.88536 0.88370 0.86548 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.65 16 11 C 0.53 8.75 7.85 -10.98 -0.09 8.66 16 12 O -0.51 -10.53 15.86 5.56 0.09 -10.44 16 13 N -0.74 -7.87 5.39 -60.30 -0.32 -8.19 16 14 C 0.12 0.99 5.22 -4.04 -0.02 0.97 16 15 C 0.17 1.11 2.43 -67.93 -0.17 0.94 16 16 H 0.10 0.80 7.33 -51.93 -0.38 0.42 16 17 N -0.72 -3.88 4.49 -54.95 -0.25 -4.13 16 18 C 0.60 4.31 7.14 -12.61 -0.09 4.22 16 19 O -0.51 -4.97 13.95 5.26 0.07 -4.90 16 20 C -0.07 -0.49 7.17 -82.33 -0.59 -1.08 16 21 C 0.04 0.29 11.87 -17.35 -0.21 0.09 16 22 N -0.27 -2.73 12.35 30.47 0.38 -2.36 16 23 N -0.04 -0.37 13.35 60.35 0.81 0.43 16 24 N -0.37 -2.24 6.98 33.31 0.23 -2.00 16 25 H 0.45 1.16 8.32 -190.33 -1.58 -0.42 16 26 C -0.17 -1.12 5.36 -90.62 -0.49 -1.60 16 27 C -0.16 -1.09 10.18 -26.69 -0.27 -1.36 16 28 C -0.18 -1.29 9.73 -26.70 -0.26 -1.55 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.40 3.38 8.14 -40.82 -0.33 3.05 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 1.42 7.87 -40.82 -0.32 1.10 16 36 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 40 H 0.12 1.02 5.02 -51.92 -0.26 0.76 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -36.18 370.97 -7.88 -44.06 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.22 Total: 0.55 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.76 Total: -5.99 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 1.58 Total: -41.13 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.18 -7.88 -44.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578117062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.903 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds