Wall clock time and date at job start Tue Mar 31 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47516 * 239.99793 * 3 2 1 5 5 H 1.48501 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46988 * 119.99438 * 3 2 1 7 7 C 1.38801 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99908 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99845 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47071 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.47589 * 295.00690 * 15 14 13 17 17 N 1.46500 * 109.47003 * 55.00255 * 15 14 13 18 18 C 1.34773 * 120.00509 * 204.99732 * 17 15 14 19 19 O 1.21620 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.47230 * 120.00479 * 180.02562 * 18 17 15 21 21 C 1.37011 * 127.19122 * 180.02562 * 20 18 17 22 22 N 1.33316 * 106.37221 * 179.97438 * 21 20 18 23 23 N 1.28512 * 109.44164 * 359.97438 * 22 21 20 24 24 N 1.28716 * 110.63892 * 359.71347 * 23 22 21 25 25 H 0.96996 * 126.04126 * 180.29967 * 24 23 22 26 26 C 1.52996 * 109.47215 * 175.00179 * 15 14 13 27 27 C 1.53002 * 117.49888 * 111.25646 * 26 15 14 28 28 C 1.53000 * 117.50107 * 179.91408 * 26 15 14 29 29 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46745 * 59.99913 * 10 9 7 31 31 H 1.08996 * 109.46878 * 300.00346 * 10 9 7 32 32 H 0.96999 * 120.00109 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.46694 * 60.00670 * 14 13 11 34 34 H 1.08996 * 109.47259 * 300.00660 * 14 13 11 35 35 H 0.97006 * 119.99923 * 24.99965 * 17 15 14 36 36 H 1.07995 * 126.81210 * 359.97438 * 21 20 18 37 37 H 1.09002 * 115.54951 * 325.58620 * 26 15 14 38 38 H 1.09000 * 117.49996 * 215.00804 * 27 26 15 39 39 H 1.08999 * 117.49664 * 0.02562 * 27 26 15 40 40 H 1.09008 * 117.49673 * 359.97438 * 28 26 15 41 41 H 1.08999 * 117.49959 * 144.99502 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3306 -7.7151 0.0009 15 6 3.5027 -8.6985 0.0007 16 1 4.0597 -8.5999 -0.9309 17 7 4.3867 -8.4048 1.1315 18 6 5.6867 -8.7564 1.0797 19 8 6.1261 -9.3173 0.0940 20 6 6.5749 -8.4618 2.2163 21 6 7.9102 -8.7506 2.3205 22 7 8.2993 -8.3034 3.5146 23 7 7.2973 -7.7737 4.1203 24 7 6.2405 -7.8346 3.3880 25 1 5.3620 -7.4986 3.6248 26 6 2.9698 -10.1270 0.1277 27 6 3.1125 -11.0449 -1.0881 28 6 3.9935 -11.2640 0.1443 29 1 -0.4851 0.8400 -0.0004 30 1 3.1245 -3.7312 0.8895 31 1 3.1245 -3.7312 -0.8905 32 1 3.8011 -6.1834 -0.0006 33 1 1.7212 -7.8755 -0.8885 34 1 1.7229 -7.8747 0.8915 35 1 4.0363 -7.9572 1.9175 36 1 8.5253 -9.2429 1.5819 37 1 2.0784 -10.2432 0.7442 38 1 2.3150 -11.7649 -1.2716 39 1 3.5864 -10.6311 -1.9782 40 1 5.0466 -10.9943 0.0644 41 1 3.7756 -12.1282 0.7718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578117062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:40 Heat of formation + Delta-G solvation = 21.204494 kcal Electronic energy + Delta-G solvation = -26111.867195 eV Core-core repulsion = 22155.089433 eV Total energy + Delta-G solvation = -3956.777762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.45326 -41.39112 -40.43594 -38.44740 -36.36706 -35.15283 -34.59157 -34.29413 -32.60544 -31.57823 -29.54593 -27.66536 -25.75407 -24.49170 -23.88374 -23.19450 -22.42083 -21.88827 -21.32948 -20.43726 -19.81215 -18.07592 -17.81350 -17.69407 -17.48146 -17.13660 -16.88274 -16.66733 -16.37166 -15.98053 -15.77261 -15.35071 -15.22900 -14.86927 -14.64161 -14.31820 -14.13811 -13.40230 -13.32294 -13.17767 -13.10409 -12.88241 -12.74737 -12.63314 -12.42600 -12.31363 -11.87252 -11.76271 -11.56876 -11.26144 -11.15761 -11.13828 -10.94587 -10.66926 -10.29821 -10.28152 -10.19462 -8.66477 -8.35587 -6.12990 -0.23890 1.16098 1.25740 1.37997 1.42677 1.45784 1.54817 1.58688 1.71450 1.89641 2.20824 2.27402 2.91335 2.98782 3.24628 3.30426 3.44246 3.57977 3.76912 3.87927 3.97329 4.05045 4.07495 4.14970 4.20869 4.29194 4.42826 4.50794 4.60022 4.81360 4.85757 4.91600 5.04847 5.10025 5.25284 5.33178 5.38634 5.41024 5.60910 6.16535 6.18581 6.40443 6.82693 7.06282 7.13924 7.18981 8.73087 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.002612 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.162100 B =10715.216096 C =12721.063422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.133 4.133 11 C 0.538 3.462 12 O -0.558 6.558 13 N -0.714 5.714 14 C 0.119 3.881 15 C 0.180 3.820 16 H 0.097 0.903 17 N -0.706 5.706 18 C 0.609 3.391 19 O -0.531 6.531 20 C -0.063 4.063 21 C 0.029 3.971 22 N -0.299 5.299 23 N -0.061 5.061 24 N -0.351 5.351 25 H 0.467 0.533 26 C -0.169 4.169 27 C -0.166 4.166 28 C -0.183 4.183 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.412 0.588 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.220 0.780 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.335 -22.851 3.165 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.284 4.284 11 C 0.324 3.676 12 O -0.436 6.436 13 N -0.369 5.369 14 C -0.005 4.005 15 C 0.076 3.924 16 H 0.115 0.885 17 N -0.358 5.358 18 C 0.393 3.607 19 O -0.406 6.406 20 C -0.198 4.198 21 C -0.131 4.131 22 N -0.163 5.163 23 N -0.043 5.043 24 N -0.081 5.081 25 H 0.317 0.683 26 C -0.189 4.189 27 C -0.204 4.204 28 C -0.220 4.220 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.249 0.751 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.236 0.764 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.193 -23.082 3.749 25.925 hybrid contribution 0.720 1.420 -0.472 1.660 sum 11.913 -21.662 3.277 24.938 Atomic orbital electron populations 1.70158 1.07886 1.28674 1.47921 1.26072 0.95920 1.03188 0.93776 0.85061 0.77866 0.75992 0.79454 1.18805 1.20450 1.18694 1.23172 0.95310 0.92193 1.58935 0.90033 1.85538 1.10296 0.99011 1.97048 1.23392 1.03644 0.94662 1.06726 1.19940 0.86162 0.86419 0.75084 1.90719 1.17204 1.85964 1.49683 1.45689 1.10117 1.04942 1.76102 1.21659 0.95535 0.79002 1.04288 1.20705 0.89364 0.92238 0.90082 0.88489 1.45856 1.08066 1.60612 1.21272 1.16609 0.81349 0.78335 0.84436 1.90839 1.75499 1.42122 1.32163 1.22243 0.97504 1.08933 0.91134 1.24302 0.92394 1.00472 0.95948 1.75026 1.21132 1.13109 1.07053 1.78236 0.89815 1.17419 1.18873 1.45621 1.13440 1.38123 1.10931 0.68311 1.22569 1.02071 0.89965 1.04284 1.23029 1.02861 1.02236 0.92273 1.23224 0.97824 0.99311 1.01666 0.91980 0.87076 0.87616 0.75113 0.89870 0.89920 0.75263 0.76390 0.86085 0.87598 0.88773 0.87987 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.64 13.22 21.65 0.29 -54.35 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.28 9.50 67.95 0.65 -29.64 16 8 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 9 S -0.15 -7.69 20.57 -56.49 -1.16 -8.86 16 10 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 11 C 0.54 16.86 7.85 87.66 0.69 17.54 16 12 O -0.56 -22.77 15.86 -3.03 -0.05 -22.82 16 13 N -0.71 -13.26 5.39 -463.07 -2.50 -15.76 16 14 C 0.12 1.74 5.22 86.38 0.45 2.19 16 15 C 0.18 1.94 2.43 44.99 0.11 2.05 16 16 H 0.10 1.27 7.33 -2.39 -0.02 1.26 16 17 N -0.71 -5.74 4.49 -446.01 -2.00 -7.74 16 18 C 0.61 7.41 7.14 86.61 0.62 8.03 16 19 O -0.53 -9.52 13.95 -4.09 -0.06 -9.57 16 20 C -0.06 -0.76 7.17 40.41 0.29 -0.47 16 21 C 0.03 0.43 11.87 84.18 1.00 1.43 16 22 N -0.30 -5.84 12.35 -57.50 -0.71 -6.55 16 23 N -0.06 -1.07 13.35 37.02 0.49 -0.57 16 24 N -0.35 -3.54 6.98 -48.52 -0.34 -3.88 16 25 H 0.47 1.24 8.32 -219.90 -1.83 -0.59 16 26 C -0.17 -1.78 5.36 -10.79 -0.06 -1.84 16 27 C -0.17 -1.91 10.18 30.62 0.31 -1.60 16 28 C -0.18 -2.29 9.73 30.62 0.30 -1.99 16 29 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 31 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 32 H 0.41 5.60 8.14 -92.71 -0.75 4.84 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.41 1.58 7.87 -92.70 -0.73 0.85 16 36 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.12 1.08 8.11 -2.39 -0.02 1.06 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 40 H 0.10 1.65 5.02 -2.38 -0.01 1.63 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.21 370.97 -0.94 -81.16 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -2.19 Total: 11.59 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.26 Total: -7.27 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -4.77 Total: -88.86 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.11 Total: -32.40 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.86 kcal Total: -80.21 -0.94 -81.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578117062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.363 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds