Wall clock time and date at job start Tue Mar 31 2020 22:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47260 * 299.99856 * 3 2 1 6 6 H 1.48502 * 109.47416 * 60.00304 * 3 2 1 7 7 C 1.38798 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99998 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99585 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46877 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00091 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99765 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99973 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47591 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47003 * 64.99342 * 15 14 13 17 17 N 1.46499 * 109.46580 * 304.99634 * 15 14 13 18 18 C 1.34774 * 119.99789 * 154.99766 * 17 15 14 19 19 O 1.21614 * 120.00111 * 0.02562 * 18 17 15 20 20 C 1.47240 * 120.00254 * 180.02562 * 18 17 15 21 21 C 1.37005 * 127.19201 * 180.02562 * 20 18 17 22 22 N 1.33313 * 106.37196 * 179.73389 * 21 20 18 23 23 N 1.28512 * 109.43963 * 359.97438 * 22 21 20 24 24 N 1.28707 * 110.64295 * 0.02562 * 23 22 21 25 25 H 0.96999 * 126.04314 * 180.02562 * 24 23 22 26 26 C 1.52995 * 109.47156 * 184.99729 * 15 14 13 27 27 C 1.52998 * 117.49687 * 248.74191 * 26 15 14 28 28 C 1.53006 * 117.49504 * 180.08222 * 26 15 14 29 29 H 0.97005 * 120.00127 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47113 * 60.00744 * 10 9 7 31 31 H 1.08992 * 109.47675 * 300.00013 * 10 9 7 32 32 H 0.96996 * 120.00059 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47710 * 59.99024 * 14 13 11 34 34 H 1.09005 * 109.47001 * 299.99877 * 14 13 11 35 35 H 0.97003 * 120.00774 * 335.00047 * 17 15 14 36 36 H 1.08001 * 126.80866 * 359.73395 * 21 20 18 37 37 H 1.09000 * 115.55098 * 34.41944 * 26 15 14 38 38 H 1.09005 * 117.50181 * 0.02562 * 27 26 15 39 39 H 1.09004 * 117.49708 * 145.02119 * 27 26 15 40 40 H 1.08996 * 117.49901 * 214.98021 * 28 26 15 41 41 H 1.08993 * 117.49913 * 359.97438 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3431 -0.0008 14 6 2.3302 -7.7151 -0.0019 15 6 3.5022 -8.6986 -0.0018 16 1 4.0592 -8.6000 0.9299 17 7 4.3861 -8.4050 -1.1326 18 6 5.6862 -8.7567 -1.0807 19 8 6.1253 -9.3183 -0.0954 20 6 6.5748 -8.4611 -2.2169 21 6 7.9098 -8.7506 -2.3214 22 7 8.2979 -8.3078 -3.5174 23 7 7.2951 -7.7810 -4.1245 24 7 6.2377 -7.8445 -3.3935 25 1 5.3575 -7.5148 -3.6332 26 6 2.9692 -10.1271 -0.1287 27 6 3.1119 -11.0449 1.0871 28 6 3.9929 -11.2642 -0.1454 29 1 -0.4850 0.8401 0.0004 30 1 3.1242 -3.7314 0.8895 31 1 3.1244 -3.7314 -0.8904 32 1 3.8007 -6.1835 -0.0004 33 1 1.7224 -7.8748 -0.8925 34 1 1.7207 -7.8756 0.8874 35 1 4.0359 -7.9573 -1.9186 36 1 8.5255 -9.2405 -1.5815 37 1 2.0779 -10.2433 -0.7453 38 1 3.5851 -10.6309 1.9775 39 1 2.3145 -11.7652 1.2703 40 1 3.7748 -12.1285 -0.7726 41 1 5.0460 -10.9944 -0.0665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578117063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:44 Heat of formation + Delta-G solvation = 49.802426 kcal Electronic energy + Delta-G solvation = -26110.424039 eV Core-core repulsion = 22154.886376 eV Total energy + Delta-G solvation = -3955.537663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.84672 -40.70701 -39.25746 -37.79052 -35.59464 -34.37067 -33.56606 -32.49849 -31.94414 -30.46557 -28.49278 -25.58716 -25.08224 -23.76702 -23.23316 -22.66158 -21.80367 -21.08752 -20.41183 -19.77438 -18.01234 -17.23824 -17.15922 -16.92913 -16.48458 -16.16774 -15.83731 -15.36857 -15.21551 -14.86697 -14.77604 -14.54719 -14.20905 -13.87096 -13.35553 -13.14551 -12.72472 -12.67353 -12.47586 -12.22650 -11.86966 -11.83080 -11.73230 -11.26422 -11.12221 -11.09480 -10.95506 -10.82979 -10.69783 -10.54554 -10.04920 -9.88728 -9.75273 -9.56684 -9.17944 -9.11587 -8.33132 -6.58909 -6.28892 -4.00308 0.34664 1.80354 1.89607 2.24317 2.48332 2.85315 2.91713 3.16994 3.22390 3.26860 3.44073 3.56366 3.79158 4.05175 4.13442 4.15207 4.37647 4.46197 4.61694 4.65107 4.67590 4.79826 4.97920 5.03203 5.06786 5.25609 5.36773 5.43743 5.47491 5.56674 5.61301 5.69761 5.75512 5.76995 5.93811 6.01384 6.03900 6.34157 6.67041 7.37805 7.45555 7.53283 7.76113 8.28300 8.40867 9.16920 10.78521 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.002612 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.482039 B =10719.216373 C =12723.094762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.743 5.743 14 C 0.116 3.884 15 C 0.168 3.832 16 H 0.103 0.897 17 N -0.718 5.718 18 C 0.601 3.399 19 O -0.507 6.507 20 C -0.070 4.070 21 C 0.037 3.963 22 N -0.270 5.270 23 N -0.040 5.040 24 N -0.372 5.372 25 H 0.452 0.548 26 C -0.174 4.174 27 C -0.164 4.164 28 C -0.180 4.180 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.205 0.795 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.975 -22.443 -3.004 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.398 5.398 14 C -0.008 4.008 15 C 0.064 3.936 16 H 0.121 0.879 17 N -0.369 5.369 18 C 0.385 3.615 19 O -0.381 6.381 20 C -0.205 4.205 21 C -0.123 4.123 22 N -0.135 5.135 23 N -0.023 5.023 24 N -0.100 5.100 25 H 0.299 0.701 26 C -0.194 4.194 27 C -0.202 4.202 28 C -0.217 4.217 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.222 0.778 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.808 -22.665 -3.559 24.951 hybrid contribution 1.099 1.447 0.398 1.860 sum 10.908 -21.218 -3.161 24.066 Atomic orbital electron populations 1.70020 1.05959 1.27450 1.46783 1.24996 0.95039 0.99083 0.94436 0.86112 0.79587 0.81808 0.77970 1.19604 1.20524 1.20499 1.22894 0.94918 0.91572 1.59084 0.90876 1.85407 1.04674 0.96391 1.96731 1.23537 1.06746 0.95282 1.04937 1.20344 0.86478 0.86241 0.75058 1.90721 1.15270 1.85530 1.47055 1.46019 1.10049 1.05213 1.78545 1.21553 0.94799 0.80408 1.04080 1.20909 0.90194 0.92545 0.89979 0.87885 1.46002 1.08739 1.61046 1.21123 1.16706 0.81145 0.78756 0.84913 1.90830 1.75011 1.40960 1.31276 1.22338 0.97805 1.09417 0.90917 1.23954 0.91710 1.00517 0.96124 1.75049 1.20331 1.12067 1.06003 1.78286 0.89116 1.16521 1.18330 1.45651 1.13153 1.39685 1.11492 0.70107 1.22567 1.01992 0.90595 1.04230 1.22966 1.02764 1.02000 0.92474 1.23286 0.98545 0.98810 1.01087 0.92164 0.89151 0.89329 0.76834 0.90694 0.89340 0.76675 0.77814 0.87135 0.88366 0.88539 0.89225 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 11 C 0.53 8.75 7.85 -10.98 -0.09 8.66 16 12 O -0.51 -10.53 15.86 5.56 0.09 -10.44 16 13 N -0.74 -7.87 5.39 -60.29 -0.32 -8.20 16 14 C 0.12 0.99 5.21 -4.04 -0.02 0.97 16 15 C 0.17 1.11 2.43 -67.93 -0.17 0.94 16 16 H 0.10 0.80 7.33 -51.93 -0.38 0.42 16 17 N -0.72 -3.88 4.49 -54.95 -0.25 -4.13 16 18 C 0.60 4.31 7.14 -12.60 -0.09 4.22 16 19 O -0.51 -4.97 13.94 5.27 0.07 -4.90 16 20 C -0.07 -0.49 7.17 -82.33 -0.59 -1.08 16 21 C 0.04 0.29 11.87 -17.36 -0.21 0.09 16 22 N -0.27 -2.73 12.35 30.47 0.38 -2.36 16 23 N -0.04 -0.37 13.35 60.35 0.81 0.43 16 24 N -0.37 -2.23 6.98 33.31 0.23 -2.00 16 25 H 0.45 1.16 8.32 -190.34 -1.58 -0.43 16 26 C -0.17 -1.12 5.36 -90.62 -0.49 -1.60 16 27 C -0.16 -1.09 10.18 -26.69 -0.27 -1.36 16 28 C -0.18 -1.29 9.74 -26.69 -0.26 -1.55 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 32 H 0.40 3.39 8.14 -40.82 -0.33 3.06 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 1.42 7.87 -40.82 -0.32 1.10 16 36 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.12 1.02 5.01 -51.93 -0.26 0.76 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -36.21 370.97 -7.88 -44.09 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.22 Total: 0.47 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.76 Total: -5.95 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.58 Total: -41.10 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.21 -7.88 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578117063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.897 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds