Wall clock time and date at job start Tue Mar 31 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47260 * 299.99856 * 3 2 1 6 6 H 1.48502 * 109.47416 * 60.00304 * 3 2 1 7 7 C 1.38798 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99998 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99585 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46877 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00091 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99765 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99973 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47591 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47003 * 64.99342 * 15 14 13 17 17 N 1.46499 * 109.46580 * 304.99634 * 15 14 13 18 18 C 1.34774 * 119.99789 * 154.99766 * 17 15 14 19 19 O 1.21614 * 120.00111 * 0.02562 * 18 17 15 20 20 C 1.47240 * 120.00254 * 180.02562 * 18 17 15 21 21 C 1.37005 * 127.19201 * 180.02562 * 20 18 17 22 22 N 1.33313 * 106.37196 * 179.73389 * 21 20 18 23 23 N 1.28512 * 109.43963 * 359.97438 * 22 21 20 24 24 N 1.28707 * 110.64295 * 0.02562 * 23 22 21 25 25 H 0.96999 * 126.04314 * 180.02562 * 24 23 22 26 26 C 1.52995 * 109.47156 * 184.99729 * 15 14 13 27 27 C 1.52998 * 117.49687 * 248.74191 * 26 15 14 28 28 C 1.53006 * 117.49504 * 180.08222 * 26 15 14 29 29 H 0.97005 * 120.00127 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47113 * 60.00744 * 10 9 7 31 31 H 1.08992 * 109.47675 * 300.00013 * 10 9 7 32 32 H 0.96996 * 120.00059 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.47710 * 59.99024 * 14 13 11 34 34 H 1.09005 * 109.47001 * 299.99877 * 14 13 11 35 35 H 0.97003 * 120.00774 * 335.00047 * 17 15 14 36 36 H 1.08001 * 126.80866 * 359.73395 * 21 20 18 37 37 H 1.09000 * 115.55098 * 34.41944 * 26 15 14 38 38 H 1.09005 * 117.50181 * 0.02562 * 27 26 15 39 39 H 1.09004 * 117.49708 * 145.02119 * 27 26 15 40 40 H 1.08996 * 117.49901 * 214.98021 * 28 26 15 41 41 H 1.08993 * 117.49913 * 359.97438 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3431 -0.0008 14 6 2.3302 -7.7151 -0.0019 15 6 3.5022 -8.6986 -0.0018 16 1 4.0592 -8.6000 0.9299 17 7 4.3861 -8.4050 -1.1326 18 6 5.6862 -8.7567 -1.0807 19 8 6.1253 -9.3183 -0.0954 20 6 6.5748 -8.4611 -2.2169 21 6 7.9098 -8.7506 -2.3214 22 7 8.2979 -8.3078 -3.5174 23 7 7.2951 -7.7810 -4.1245 24 7 6.2377 -7.8445 -3.3935 25 1 5.3575 -7.5148 -3.6332 26 6 2.9692 -10.1271 -0.1287 27 6 3.1119 -11.0449 1.0871 28 6 3.9929 -11.2642 -0.1454 29 1 -0.4850 0.8401 0.0004 30 1 3.1242 -3.7314 0.8895 31 1 3.1244 -3.7314 -0.8904 32 1 3.8007 -6.1835 -0.0004 33 1 1.7224 -7.8748 -0.8925 34 1 1.7207 -7.8756 0.8874 35 1 4.0359 -7.9573 -1.9186 36 1 8.5255 -9.2405 -1.5815 37 1 2.0779 -10.2433 -0.7453 38 1 3.5851 -10.6309 1.9775 39 1 2.3145 -11.7652 1.2703 40 1 3.7748 -12.1285 -0.7726 41 1 5.0460 -10.9944 -0.0665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578117063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:43 Heat of formation + Delta-G solvation = 21.144992 kcal Electronic energy + Delta-G solvation = -26111.666718 eV Core-core repulsion = 22154.886376 eV Total energy + Delta-G solvation = -3956.780342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.45448 -41.39185 -40.43736 -38.44747 -36.36696 -35.15319 -34.59321 -34.29460 -32.60549 -31.57827 -29.54609 -27.67027 -25.75355 -24.49155 -23.88399 -23.19605 -22.42072 -21.88819 -21.32947 -20.43754 -19.81474 -18.07710 -17.81260 -17.69490 -17.48249 -17.13798 -16.88748 -16.66797 -16.37169 -15.98188 -15.77346 -15.34893 -15.23038 -14.86909 -14.64728 -14.31845 -14.13859 -13.40322 -13.32309 -13.16859 -13.10366 -12.92921 -12.74749 -12.60507 -12.42721 -12.31275 -11.87224 -11.72885 -11.56809 -11.26100 -11.16856 -11.15772 -10.94580 -10.66992 -10.29717 -10.27569 -10.19432 -8.66451 -8.36088 -6.13177 -0.23831 1.16131 1.25954 1.37989 1.40188 1.46061 1.56489 1.58732 1.71532 1.89595 2.20717 2.26923 2.91312 2.98552 3.24622 3.30317 3.44233 3.57952 3.76897 3.87959 3.97313 4.05024 4.07505 4.14968 4.20843 4.29183 4.42818 4.50827 4.59992 4.81351 4.85778 4.91585 5.04856 5.10008 5.25274 5.33221 5.38673 5.41585 5.60937 6.16536 6.18956 6.40458 6.82691 7.06188 7.13965 7.19004 8.73074 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.002612 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.482039 B =10719.216373 C =12723.094762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.133 4.133 11 C 0.538 3.462 12 O -0.558 6.558 13 N -0.714 5.714 14 C 0.119 3.881 15 C 0.180 3.820 16 H 0.097 0.903 17 N -0.706 5.706 18 C 0.609 3.391 19 O -0.531 6.531 20 C -0.063 4.063 21 C 0.029 3.971 22 N -0.299 5.299 23 N -0.061 5.061 24 N -0.351 5.351 25 H 0.467 0.533 26 C -0.169 4.169 27 C -0.166 4.166 28 C -0.183 4.183 29 H 0.271 0.729 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.412 0.588 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.220 0.780 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.331 -22.880 -3.167 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.081 5.919 10 C -0.284 4.284 11 C 0.324 3.676 12 O -0.436 6.436 13 N -0.369 5.369 14 C -0.005 4.005 15 C 0.076 3.924 16 H 0.115 0.885 17 N -0.358 5.358 18 C 0.393 3.607 19 O -0.406 6.406 20 C -0.198 4.198 21 C -0.131 4.131 22 N -0.163 5.163 23 N -0.043 5.043 24 N -0.081 5.081 25 H 0.317 0.683 26 C -0.189 4.189 27 C -0.204 4.204 28 C -0.220 4.220 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.249 0.751 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.236 0.764 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.195 -23.121 -3.754 25.961 hybrid contribution 0.703 1.429 0.474 1.662 sum 11.898 -21.692 -3.280 24.957 Atomic orbital electron populations 1.70174 1.07877 1.28529 1.48066 1.26075 0.95931 1.03199 0.93818 0.84950 0.78617 0.76613 0.78063 1.18165 1.19958 1.20037 1.23226 0.95290 0.92152 1.58692 0.90058 1.85545 1.10313 0.99053 1.97035 1.23391 1.03637 0.94663 1.06725 1.19938 0.86161 0.86417 0.75086 1.90717 1.17206 1.85960 1.49679 1.45688 1.10118 1.04943 1.76103 1.21660 0.95535 0.79003 1.04290 1.20706 0.89365 0.92238 0.90080 0.88490 1.45856 1.08068 1.60612 1.21272 1.16611 0.81348 0.78332 0.84438 1.90837 1.75508 1.42089 1.32185 1.22245 0.97460 1.09169 0.90951 1.24301 0.92456 1.00456 0.95906 1.75026 1.21151 1.13128 1.07016 1.78232 0.89779 1.17358 1.18974 1.45619 1.13329 1.38453 1.10708 0.68308 1.22568 1.02070 0.89964 1.04285 1.23030 1.02860 1.02231 0.92273 1.23223 0.97828 0.99308 1.01671 0.91996 0.87621 0.87083 0.75116 0.89920 0.89869 0.75262 0.76389 0.86084 0.88769 0.87600 0.88583 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.57 13.22 21.65 0.29 -54.29 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -30.13 9.50 67.95 0.65 -29.48 16 8 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 9 S -0.15 -7.72 20.57 -56.49 -1.16 -8.88 16 10 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 11 C 0.54 16.86 7.85 87.66 0.69 17.55 16 12 O -0.56 -22.76 15.86 -3.01 -0.05 -22.81 16 13 N -0.71 -13.27 5.39 -463.05 -2.49 -15.77 16 14 C 0.12 1.74 5.21 86.38 0.45 2.19 16 15 C 0.18 1.94 2.43 44.99 0.11 2.05 16 16 H 0.10 1.27 7.33 -2.39 -0.02 1.26 16 17 N -0.71 -5.74 4.49 -446.00 -2.00 -7.74 16 18 C 0.61 7.42 7.14 86.61 0.62 8.03 16 19 O -0.53 -9.52 13.94 -4.08 -0.06 -9.58 16 20 C -0.06 -0.76 7.17 40.41 0.29 -0.47 16 21 C 0.03 0.43 11.87 84.18 1.00 1.43 16 22 N -0.30 -5.84 12.35 -57.50 -0.71 -6.55 16 23 N -0.06 -1.07 13.35 37.02 0.49 -0.57 16 24 N -0.35 -3.54 6.98 -48.51 -0.34 -3.88 16 25 H 0.47 1.23 8.32 -219.90 -1.83 -0.60 16 26 C -0.17 -1.78 5.36 -10.79 -0.06 -1.83 16 27 C -0.17 -1.91 10.18 30.62 0.31 -1.60 16 28 C -0.18 -2.29 9.74 30.62 0.30 -1.99 16 29 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 31 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 32 H 0.41 5.61 8.14 -92.71 -0.75 4.85 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.41 1.58 7.87 -92.71 -0.73 0.85 16 36 H 0.22 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.12 1.08 8.11 -2.39 -0.02 1.06 16 38 H 0.09 1.16 8.05 -2.38 -0.02 1.15 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.65 5.01 -2.39 -0.01 1.64 16 Total: -1.00 -80.23 370.97 -0.94 -81.18 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.19 Total: 11.35 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.26 Total: -7.15 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.77 Total: -88.80 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.10 Total: -32.39 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Total: -80.23 -0.94 -81.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578117063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.322 kcal (2) G-P(sol) polarization free energy of solvation -80.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds