Wall clock time and date at job start Tue Mar 31 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46599 * 299.99631 * 3 2 1 6 6 H 1.48499 * 109.47123 * 59.99696 * 3 2 1 7 7 C 1.38800 * 120.00664 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00621 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99367 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99573 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00018 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00395 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46761 * 324.99955 * 14 13 11 16 16 C 1.52995 * 109.47000 * 205.00190 * 14 13 11 17 17 N 1.46501 * 109.47403 * 55.00119 * 16 14 13 18 18 C 1.34775 * 120.00236 * 179.97438 * 17 16 14 19 19 O 1.21618 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.47232 * 120.00331 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19363 * 180.02562 * 20 18 17 22 22 N 1.33315 * 106.37501 * 180.02562 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.96991 * 126.03722 * 179.97438 * 24 23 22 26 26 C 1.52997 * 109.46738 * 85.00095 * 14 13 11 27 27 C 1.52991 * 117.50331 * 8.75180 * 26 14 13 28 28 C 1.52999 * 117.50330 * 300.08514 * 26 14 13 29 29 H 0.96999 * 120.00590 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46909 * 60.00099 * 10 9 7 31 31 H 1.08996 * 109.46822 * 299.99373 * 10 9 7 32 32 H 0.97001 * 119.99797 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.47721 * 294.99824 * 16 14 13 34 34 H 1.09005 * 109.47236 * 175.00002 * 16 14 13 35 35 H 0.97001 * 119.99684 * 0.02562 * 17 16 14 36 36 H 1.08000 * 126.80879 * 0.04255 * 21 20 18 37 37 H 1.09008 * 115.54578 * 154.41971 * 26 14 13 38 38 H 1.09006 * 117.49787 * 359.97438 * 27 26 14 39 39 H 1.08993 * 117.50387 * 145.02115 * 27 26 14 40 40 H 1.08996 * 117.50308 * 214.97992 * 28 26 14 41 41 H 1.09003 * 117.49398 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3307 -7.7151 0.0019 15 1 1.4156 -7.7598 0.5924 16 6 3.3769 -8.6507 0.6109 17 7 3.7502 -8.1656 1.9419 18 6 4.6629 -8.8365 2.6722 19 8 5.1769 -9.8444 2.2261 20 6 5.0385 -8.3487 4.0097 21 6 5.9428 -8.9102 4.8722 22 7 5.9594 -8.1347 5.9565 23 7 5.1358 -7.1609 5.7986 24 7 4.5563 -7.2382 4.6518 25 1 3.8951 -6.6199 4.3038 26 6 2.0327 -8.1492 -1.4345 27 6 2.4941 -7.2241 -2.5623 28 6 1.0058 -7.3320 -2.2210 29 1 -0.4851 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1245 -3.7313 -0.8895 32 1 3.8012 -6.1834 0.0004 33 1 4.2596 -8.6739 -0.0280 34 1 2.9618 -9.6552 0.6936 35 1 3.3399 -7.3619 2.2979 36 1 6.5265 -9.8035 4.7065 37 1 2.0685 -9.2231 -1.6181 38 1 3.0097 -6.3058 -2.2809 39 1 2.8330 -7.6891 -3.4880 40 1 0.3663 -7.8680 -2.9222 41 1 0.5422 -6.4852 -1.7148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578162731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:24 Heat of formation + Delta-G solvation = 53.146648 kcal Electronic energy + Delta-G solvation = -26354.783382 eV Core-core repulsion = 22399.390735 eV Total energy + Delta-G solvation = -3955.392646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.78183 -40.56857 -39.68241 -37.32458 -35.64278 -34.11937 -33.47027 -32.53676 -31.96252 -30.45510 -28.54621 -25.62352 -25.28112 -23.81557 -22.94411 -22.32470 -21.60905 -21.11718 -20.19841 -19.69000 -18.00421 -17.32922 -16.90810 -16.77684 -16.64027 -16.30595 -15.94238 -15.36705 -14.90260 -14.84088 -14.72222 -14.53919 -14.18778 -13.81299 -13.42433 -13.14003 -12.66331 -12.62608 -12.41652 -12.15068 -12.03287 -11.73167 -11.41564 -11.20818 -11.15058 -11.13328 -10.85692 -10.81859 -10.43369 -10.13603 -10.04917 -9.91933 -9.75945 -9.59863 -9.18635 -9.12367 -8.38359 -6.63458 -6.32793 -4.04575 0.41187 1.86255 1.96760 2.34969 2.55780 2.75979 2.82027 3.14329 3.19676 3.24065 3.47450 3.74368 3.84523 4.09543 4.11350 4.23538 4.50236 4.65621 4.71771 4.77630 4.90483 4.96395 5.03149 5.05219 5.12144 5.26433 5.42182 5.51960 5.60143 5.65184 5.68132 5.69111 5.86038 5.94649 6.07786 6.10044 6.33301 6.40460 6.70732 7.39500 7.41466 7.49446 7.82043 8.24246 8.33286 9.13306 10.74499 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.003075 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.502513 B = 9104.581915 C =11580.777786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.156 4.156 11 C 0.533 3.467 12 O -0.505 6.505 13 N -0.738 5.738 14 C 0.166 3.834 15 H 0.100 0.900 16 C 0.117 3.883 17 N -0.723 5.723 18 C 0.598 3.402 19 O -0.512 6.512 20 C -0.071 4.071 21 C 0.036 3.964 22 N -0.271 5.271 23 N -0.039 5.039 24 N -0.372 5.372 25 H 0.453 0.547 26 C -0.174 4.174 27 C -0.173 4.173 28 C -0.177 4.177 29 H 0.269 0.731 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.205 0.795 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -18.521 1.826 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.171 5.829 10 C -0.307 4.307 11 C 0.320 3.680 12 O -0.379 6.379 13 N -0.394 5.394 14 C 0.060 3.940 15 H 0.118 0.882 16 C -0.006 4.006 17 N -0.375 5.375 18 C 0.382 3.618 19 O -0.386 6.386 20 C -0.205 4.205 21 C -0.124 4.124 22 N -0.136 5.136 23 N -0.021 5.021 24 N -0.099 5.099 25 H 0.300 0.700 26 C -0.194 4.194 27 C -0.210 4.210 28 C -0.214 4.214 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.222 0.778 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.199 -18.794 2.830 20.323 hybrid contribution 1.672 1.587 -1.178 2.588 sum 8.871 -17.207 1.652 19.429 Atomic orbital electron populations 1.70007 1.05954 1.27507 1.46674 1.24986 0.95023 0.99074 0.94377 0.86126 0.79590 0.81846 0.78010 1.19610 1.20492 1.20495 1.22887 0.94900 0.91582 1.59238 0.90895 1.85403 1.04436 0.96361 1.96738 1.23558 1.06872 0.95317 1.04934 1.20372 0.86605 0.86237 0.74822 1.90669 1.15218 1.85351 1.46665 1.46208 1.10120 1.05077 1.77947 1.20644 0.97113 0.80889 0.95340 0.88185 1.21750 0.98882 0.98148 0.81853 1.45873 1.42984 1.29958 1.18725 1.16706 0.79513 0.83531 0.82073 1.90890 1.53426 1.24028 1.70224 1.22343 1.05710 0.94073 0.98422 1.23944 0.98140 1.01346 0.88990 1.75045 1.14601 1.01317 1.22592 1.78302 1.05608 1.18058 1.00169 1.45684 1.31195 1.20172 1.12875 0.69977 1.22558 1.07328 0.97831 0.91683 1.22939 0.98582 1.01349 0.98149 1.23389 0.91984 1.03576 1.02405 0.92130 0.89372 0.89175 0.76593 0.89857 0.89203 0.76489 0.77820 0.87143 0.88599 0.89214 0.89283 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.05 13.22 55.49 0.73 -24.31 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.45 9.50 30.94 0.29 -14.15 16 8 H 0.07 1.86 7.80 -52.49 -0.41 1.46 16 9 S -0.06 -1.38 20.57 -107.50 -2.21 -3.59 16 10 C -0.16 -2.68 6.16 36.01 0.22 -2.46 16 11 C 0.53 7.74 6.69 -10.99 -0.07 7.66 16 12 O -0.51 -9.19 12.89 5.55 0.07 -9.12 16 13 N -0.74 -6.86 3.05 -53.81 -0.16 -7.03 16 14 C 0.17 1.36 2.59 -67.93 -0.18 1.19 16 15 H 0.10 0.98 7.58 -51.93 -0.39 0.59 16 16 C 0.12 0.76 5.21 -4.04 -0.02 0.74 16 17 N -0.72 -4.55 5.38 -61.45 -0.33 -4.88 16 18 C 0.60 4.96 7.81 -12.61 -0.10 4.86 16 19 O -0.51 -5.76 16.92 5.26 0.09 -5.67 16 20 C -0.07 -0.57 7.17 -82.33 -0.59 -1.16 16 21 C 0.04 0.31 11.87 -17.36 -0.21 0.11 16 22 N -0.27 -2.95 12.35 30.47 0.38 -2.58 16 23 N -0.04 -0.40 13.35 60.35 0.81 0.40 16 24 N -0.37 -2.71 6.98 33.31 0.23 -2.48 16 25 H 0.45 1.94 8.32 -190.33 -1.58 0.36 16 26 C -0.17 -1.55 5.70 -90.63 -0.52 -2.06 16 27 C -0.17 -1.75 9.74 -26.70 -0.26 -2.01 16 28 C -0.18 -2.08 9.83 -26.69 -0.26 -2.34 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 31 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 32 H 0.40 2.90 8.60 -40.82 -0.35 2.55 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 2.05 7.40 -40.82 -0.30 1.75 16 36 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.11 0.80 8.11 -51.92 -0.42 0.37 16 38 H 0.10 1.05 6.67 -51.93 -0.35 0.71 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.12 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -34.74 368.06 -7.82 -42.56 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.16 Total: 3.26 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.78 Total: -7.68 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.65 Total: -40.87 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.21 Total: -3.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.74 -7.82 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578162731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.705 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds