Wall clock time and date at job start Tue Mar 31 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46599 * 299.99631 * 3 2 1 6 6 H 1.48499 * 109.47123 * 59.99696 * 3 2 1 7 7 C 1.38800 * 120.00664 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00621 * 180.02562 * 7 2 1 9 9 S 1.76207 * 119.99367 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99573 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00018 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00395 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46761 * 324.99955 * 14 13 11 16 16 C 1.52995 * 109.47000 * 205.00190 * 14 13 11 17 17 N 1.46501 * 109.47403 * 55.00119 * 16 14 13 18 18 C 1.34775 * 120.00236 * 179.97438 * 17 16 14 19 19 O 1.21618 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.47232 * 120.00331 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19363 * 180.02562 * 20 18 17 22 22 N 1.33315 * 106.37501 * 180.02562 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.96991 * 126.03722 * 179.97438 * 24 23 22 26 26 C 1.52997 * 109.46738 * 85.00095 * 14 13 11 27 27 C 1.52991 * 117.50331 * 8.75180 * 26 14 13 28 28 C 1.52999 * 117.50330 * 300.08514 * 26 14 13 29 29 H 0.96999 * 120.00590 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46909 * 60.00099 * 10 9 7 31 31 H 1.08996 * 109.46822 * 299.99373 * 10 9 7 32 32 H 0.97001 * 119.99797 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.47721 * 294.99824 * 16 14 13 34 34 H 1.09005 * 109.47236 * 175.00002 * 16 14 13 35 35 H 0.97001 * 119.99684 * 0.02562 * 17 16 14 36 36 H 1.08000 * 126.80879 * 0.04255 * 21 20 18 37 37 H 1.09008 * 115.54578 * 154.41971 * 26 14 13 38 38 H 1.09006 * 117.49787 * 359.97438 * 27 26 14 39 39 H 1.08993 * 117.50387 * 145.02115 * 27 26 14 40 40 H 1.08996 * 117.50308 * 214.97992 * 28 26 14 41 41 H 1.09003 * 117.49398 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3307 -7.7151 0.0019 15 1 1.4156 -7.7598 0.5924 16 6 3.3769 -8.6507 0.6109 17 7 3.7502 -8.1656 1.9419 18 6 4.6629 -8.8365 2.6722 19 8 5.1769 -9.8444 2.2261 20 6 5.0385 -8.3487 4.0097 21 6 5.9428 -8.9102 4.8722 22 7 5.9594 -8.1347 5.9565 23 7 5.1358 -7.1609 5.7986 24 7 4.5563 -7.2382 4.6518 25 1 3.8951 -6.6199 4.3038 26 6 2.0327 -8.1492 -1.4345 27 6 2.4941 -7.2241 -2.5623 28 6 1.0058 -7.3320 -2.2210 29 1 -0.4851 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1245 -3.7313 -0.8895 32 1 3.8012 -6.1834 0.0004 33 1 4.2596 -8.6739 -0.0280 34 1 2.9618 -9.6552 0.6936 35 1 3.3399 -7.3619 2.2979 36 1 6.5265 -9.8035 4.7065 37 1 2.0685 -9.2231 -1.6181 38 1 3.0097 -6.3058 -2.2809 39 1 2.8330 -7.6891 -3.4880 40 1 0.3663 -7.8680 -2.9222 41 1 0.5422 -6.4852 -1.7148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578162731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:23 Heat of formation + Delta-G solvation = 26.189443 kcal Electronic energy + Delta-G solvation = -26355.952334 eV Core-core repulsion = 22399.390735 eV Total energy + Delta-G solvation = -3956.561599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.46212 -41.45973 -40.51339 -38.31495 -36.35671 -34.90414 -34.58931 -34.32260 -32.67629 -31.48005 -29.60445 -27.65566 -26.01624 -24.51311 -23.62719 -23.17860 -22.43704 -21.97689 -21.05552 -20.40693 -19.79586 -18.12234 -17.87292 -17.57761 -17.49850 -17.14923 -16.89700 -16.85385 -16.20306 -15.90102 -15.67603 -15.41646 -15.26771 -14.70913 -14.63907 -14.56498 -13.78702 -13.45402 -13.33741 -13.16452 -13.08257 -12.93932 -12.90951 -12.57823 -12.43330 -12.29812 -11.89307 -11.71011 -11.55590 -11.28082 -11.16528 -10.95166 -10.84265 -10.73489 -10.31679 -10.25404 -10.10032 -8.64210 -8.35864 -6.11821 -0.24553 1.15426 1.26886 1.37585 1.39602 1.46560 1.56274 1.58776 1.77248 1.90632 2.20663 2.27606 2.92426 2.99050 3.22436 3.31581 3.46570 3.56655 3.84100 3.92242 3.95298 4.07031 4.07237 4.25177 4.26090 4.31377 4.45130 4.53109 4.66760 4.85440 4.87375 4.91088 4.99818 5.11966 5.25297 5.41876 5.42022 5.46759 5.56978 6.12484 6.19094 6.45998 6.79178 7.06980 7.12693 7.24391 8.72949 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009320 B = 0.003075 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.502513 B = 9104.581915 C =11580.777786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.141 6.141 10 C -0.134 4.134 11 C 0.541 3.459 12 O -0.544 6.544 13 N -0.711 5.711 14 C 0.170 3.830 15 H 0.089 0.911 16 C 0.126 3.874 17 N -0.712 5.712 18 C 0.607 3.393 19 O -0.540 6.540 20 C -0.065 4.065 21 C 0.030 3.970 22 N -0.298 5.298 23 N -0.063 5.063 24 N -0.354 5.354 25 H 0.465 0.535 26 C -0.152 4.152 27 C -0.169 4.169 28 C -0.206 4.206 29 H 0.270 0.730 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.415 0.585 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.408 0.592 36 H 0.223 0.777 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -19.598 1.460 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.086 5.914 10 C -0.286 4.286 11 C 0.327 3.673 12 O -0.421 6.421 13 N -0.366 5.366 14 C 0.065 3.935 15 H 0.107 0.893 16 C 0.003 3.997 17 N -0.364 5.364 18 C 0.391 3.609 19 O -0.415 6.415 20 C -0.201 4.201 21 C -0.130 4.130 22 N -0.162 5.162 23 N -0.045 5.045 24 N -0.083 5.083 25 H 0.315 0.685 26 C -0.172 4.172 27 C -0.207 4.207 28 C -0.242 4.242 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.244 0.756 36 H 0.239 0.761 37 H 0.156 0.844 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.455 -19.868 2.468 22.141 hybrid contribution 0.977 1.804 -1.111 2.333 sum 10.432 -18.064 1.357 20.904 Atomic orbital electron populations 1.70163 1.07838 1.28462 1.48154 1.26028 0.95870 1.03093 0.93895 0.84999 0.78698 0.76862 0.78001 1.18138 1.20157 1.20061 1.23233 0.95283 0.92322 1.58531 0.90120 1.85533 1.10067 0.98812 1.97010 1.23404 1.03680 0.94847 1.06627 1.19882 0.86310 0.86199 0.74907 1.90685 1.16995 1.85658 1.48757 1.45868 1.10252 1.04558 1.75935 1.20696 0.97434 0.80021 0.95322 0.89323 1.21713 0.98549 0.97814 0.81654 1.45779 1.42217 1.29865 1.18547 1.16580 0.79368 0.83091 0.81886 1.90888 1.54592 1.25256 1.70749 1.22312 1.05444 0.94009 0.98305 1.24332 0.98405 1.01733 0.88525 1.75021 1.15377 1.02010 1.23789 1.78257 1.06404 1.18509 1.01295 1.45659 1.30666 1.19979 1.12037 0.68494 1.22666 1.04313 0.98963 0.91226 1.22972 0.96798 1.01434 0.99456 1.23259 0.93166 1.03725 1.04098 0.92066 0.87082 0.87885 0.74766 0.88760 0.88025 0.75646 0.76082 0.84374 0.89572 0.87565 0.88670 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.84 13.22 21.65 0.29 -53.55 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 0.99 42.11 29.55 68.60 2.03 44.14 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -29.43 9.50 67.95 0.65 -28.78 16 8 H 0.08 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.14 -7.16 20.57 -56.49 -1.16 -8.32 16 10 C -0.13 -4.47 6.16 71.24 0.44 -4.03 16 11 C 0.54 15.22 6.69 87.66 0.59 15.81 16 12 O -0.54 -20.13 12.89 -3.06 -0.04 -20.17 16 13 N -0.71 -11.54 3.05 -442.54 -1.35 -12.89 16 14 C 0.17 2.36 2.59 44.99 0.12 2.48 16 15 H 0.09 1.57 7.58 -2.39 -0.02 1.55 16 16 C 0.13 1.17 5.21 86.38 0.45 1.62 16 17 N -0.71 -6.73 5.38 -466.58 -2.51 -9.25 16 18 C 0.61 8.42 7.81 86.61 0.68 9.10 16 19 O -0.54 -10.70 16.92 -4.09 -0.07 -10.76 16 20 C -0.07 -0.92 7.17 40.40 0.29 -0.63 16 21 C 0.03 0.49 11.87 84.18 1.00 1.49 16 22 N -0.30 -6.26 12.35 -57.50 -0.71 -6.97 16 23 N -0.06 -1.23 13.35 37.02 0.49 -0.74 16 24 N -0.35 -4.56 6.98 -48.52 -0.34 -4.90 16 25 H 0.47 3.08 8.32 -219.90 -1.83 1.25 16 26 C -0.15 -2.30 5.70 -10.80 -0.06 -2.36 16 27 C -0.17 -3.06 9.74 30.62 0.30 -2.76 16 28 C -0.21 -4.72 9.83 30.62 0.30 -4.42 16 29 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.11 3.19 8.14 -2.40 -0.02 3.17 16 31 H 0.10 3.18 8.14 -2.40 -0.02 3.16 16 32 H 0.42 4.56 8.60 -92.71 -0.80 3.77 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.41 2.93 7.40 -92.71 -0.69 2.24 16 36 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.14 1.41 8.11 -2.38 -0.02 1.39 16 38 H 0.09 1.72 6.67 -2.38 -0.02 1.70 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.72 5.01 -2.39 -0.01 2.71 16 Total: -1.00 -78.42 368.06 -0.36 -78.79 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -2.19 Total: 15.79 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 5.21 Total: -11.15 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.13 Total: -88.31 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.11 Total: -30.93 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.16 Total: -8.32 kcal Total: -78.42 -0.36 -78.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578162731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.975 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds