Wall clock time and date at job start Tue Mar 31 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48496 * 109.47157 * 240.00225 * 3 2 1 5 5 H 1.48494 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46763 * 120.00509 * 3 2 1 7 7 C 1.38796 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00510 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99655 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46830 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00123 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00135 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47037 * 35.00355 * 14 13 11 16 16 C 1.52995 * 109.47320 * 154.99960 * 14 13 11 17 17 N 1.46501 * 109.47403 * 305.00330 * 16 14 13 18 18 C 1.34775 * 120.00236 * 179.97438 * 17 16 14 19 19 O 1.21618 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.47232 * 120.00331 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19363 * 180.02562 * 20 18 17 22 22 N 1.33315 * 106.37501 * 180.02562 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.96991 * 126.03722 * 179.97438 * 24 23 22 26 26 C 1.52994 * 109.47011 * 275.00464 * 14 13 11 27 27 C 1.53004 * 117.49731 * 128.75014 * 26 14 13 28 28 C 1.53000 * 117.50423 * 60.08573 * 26 14 13 29 29 H 0.96996 * 120.00822 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47148 * 60.00305 * 10 9 7 31 31 H 1.08998 * 109.47485 * 299.99474 * 10 9 7 32 32 H 0.97002 * 119.99793 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.47721 * 185.00035 * 16 14 13 34 34 H 1.09005 * 109.47236 * 65.00213 * 16 14 13 35 35 H 0.97001 * 119.99684 * 0.02562 * 17 16 14 36 36 H 1.08000 * 126.80852 * 359.97438 * 21 20 18 37 37 H 1.09005 * 115.54939 * 274.40795 * 26 14 13 38 38 H 1.08994 * 117.49894 * 359.97438 * 27 26 14 39 39 H 1.09000 * 117.49529 * 145.02145 * 27 26 14 40 40 H 1.08997 * 117.50321 * 214.97978 * 28 26 14 41 41 H 1.09007 * 117.49274 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0003 14 6 2.3308 -7.7150 -0.0003 15 1 1.4149 -7.7601 -0.5894 16 6 3.3761 -8.6510 -0.6103 17 7 3.7476 -8.1664 -1.9420 18 6 4.6600 -8.8370 -2.6729 19 8 5.1746 -9.8448 -2.2271 20 6 5.0330 -8.3503 -4.0114 21 6 5.9360 -8.9122 -4.8751 22 7 5.9512 -8.1372 -5.9597 23 7 5.1272 -7.1637 -5.8014 24 7 4.5496 -7.2404 -4.6536 25 1 3.8890 -6.6218 -4.3048 26 6 2.0347 -8.1486 1.4368 27 6 0.6527 -8.7379 1.7263 28 6 1.0059 -7.3336 2.2229 29 1 -0.4851 0.8399 0.0004 30 1 3.1246 -3.7312 0.8895 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1833 -0.0006 33 1 2.9609 -9.6554 -0.6920 34 1 4.2597 -8.6739 0.0275 35 1 3.3375 -7.3624 -2.2974 36 1 6.5203 -9.8053 -4.7096 37 1 2.8815 -8.5568 1.9886 38 1 -0.0456 -8.8162 0.8931 39 1 0.5903 -9.5332 2.4690 40 1 1.1755 -7.2057 3.2920 41 1 0.5396 -6.4886 1.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578162732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:27 Heat of formation + Delta-G solvation = 49.026553 kcal Electronic energy + Delta-G solvation = -26218.936478 eV Core-core repulsion = 22263.365171 eV Total energy + Delta-G solvation = -3955.571307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.78196 -40.46120 -39.59034 -37.40337 -35.71635 -34.19252 -33.54044 -32.52837 -31.94751 -30.37860 -28.48217 -25.61213 -25.22840 -23.77207 -22.89643 -22.34444 -21.61473 -21.03746 -20.50137 -19.72704 -17.98891 -17.28038 -16.95940 -16.77910 -16.64420 -16.05814 -15.79667 -15.31210 -15.17151 -14.89205 -14.74764 -14.46614 -14.16637 -13.90310 -13.37235 -13.19345 -12.65747 -12.62578 -12.31929 -12.23950 -11.88100 -11.73088 -11.37184 -11.20821 -11.14554 -11.11263 -10.87198 -10.82300 -10.49089 -10.32287 -10.05072 -9.92765 -9.76013 -9.56254 -9.16566 -9.10230 -8.38085 -6.62459 -6.31624 -4.03548 0.41128 1.86237 1.96730 2.34340 2.55634 2.74679 2.85637 3.16668 3.19416 3.22656 3.45885 3.80972 3.84046 4.10873 4.11689 4.21161 4.49660 4.62301 4.71603 4.75629 4.90544 4.96522 5.02664 5.04053 5.11862 5.21869 5.42755 5.51835 5.55304 5.61744 5.68362 5.70771 5.90189 5.97105 6.03241 6.10018 6.29038 6.42694 6.70468 7.41200 7.43089 7.49672 7.82040 8.24738 8.36258 9.14086 10.75587 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.003074 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.289911 B = 9104.994794 C =11774.570988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.156 4.156 11 C 0.535 3.465 12 O -0.509 6.509 13 N -0.736 5.736 14 C 0.165 3.835 15 H 0.098 0.902 16 C 0.118 3.882 17 N -0.723 5.723 18 C 0.598 3.402 19 O -0.512 6.512 20 C -0.071 4.071 21 C 0.036 3.964 22 N -0.271 5.271 23 N -0.039 5.039 24 N -0.372 5.372 25 H 0.453 0.547 26 C -0.174 4.174 27 C -0.171 4.171 28 C -0.174 4.174 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.399 0.601 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.205 0.795 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -18.907 -1.973 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.090 0.910 9 S 0.171 5.829 10 C -0.306 4.306 11 C 0.322 3.678 12 O -0.383 6.383 13 N -0.391 5.391 14 C 0.060 3.940 15 H 0.116 0.884 16 C -0.006 4.006 17 N -0.376 5.376 18 C 0.382 3.618 19 O -0.386 6.386 20 C -0.206 4.206 21 C -0.124 4.124 22 N -0.136 5.136 23 N -0.021 5.021 24 N -0.099 5.099 25 H 0.300 0.700 26 C -0.194 4.194 27 C -0.208 4.208 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.233 0.767 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.222 0.778 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.716 -19.174 -2.982 20.534 hybrid contribution 1.734 1.612 1.200 2.654 sum 8.450 -17.563 -1.781 19.571 Atomic orbital electron populations 1.69987 1.05956 1.27723 1.46527 1.24978 0.95020 0.99043 0.94368 0.86236 0.79284 0.81223 0.78862 1.19895 1.20744 1.19900 1.22813 0.94846 0.91637 1.59442 0.90994 1.85382 1.04492 0.96311 1.96751 1.23555 1.06830 0.95318 1.04936 1.20348 0.86575 0.86220 0.74684 1.90657 1.15277 1.85378 1.47010 1.46182 1.10061 1.04954 1.77907 1.20699 0.97308 0.81037 0.94964 0.88447 1.21753 0.98663 0.98308 0.81867 1.45874 1.43025 1.29967 1.18697 1.16707 0.79502 0.83525 0.82085 1.90890 1.53369 1.24013 1.70284 1.22340 1.05736 0.94091 0.98387 1.23944 0.98150 1.01339 0.88975 1.75045 1.14559 1.01333 1.22615 1.78303 1.05634 1.18054 1.00136 1.45685 1.31233 1.20190 1.12819 0.69975 1.22518 0.94015 1.06700 0.96166 1.22947 0.96823 0.97378 1.03668 1.23346 1.01593 0.96218 0.99930 0.92025 0.89128 0.89403 0.76723 0.89064 0.89985 0.76483 0.77814 0.87627 0.88647 0.88939 0.89257 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.22 55.49 0.73 -24.39 16 2 C 0.08 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.54 9.50 30.94 0.29 -14.24 16 8 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 9 S -0.06 -1.39 20.57 -107.50 -2.21 -3.60 16 10 C -0.16 -2.70 6.16 36.01 0.22 -2.48 16 11 C 0.53 7.90 7.18 -10.98 -0.08 7.82 16 12 O -0.51 -9.31 12.89 5.55 0.07 -9.24 16 13 N -0.74 -7.04 4.50 -53.81 -0.24 -7.28 16 14 C 0.17 1.39 2.43 -67.94 -0.17 1.22 16 15 H 0.10 0.97 7.33 -51.93 -0.38 0.59 16 16 C 0.12 0.78 5.22 -4.04 -0.02 0.76 16 17 N -0.72 -4.63 5.38 -61.45 -0.33 -4.96 16 18 C 0.60 4.99 7.81 -12.61 -0.10 4.89 16 19 O -0.51 -5.78 16.92 5.26 0.09 -5.69 16 20 C -0.07 -0.57 7.17 -82.33 -0.59 -1.16 16 21 C 0.04 0.31 11.87 -17.36 -0.21 0.11 16 22 N -0.27 -2.96 12.35 30.47 0.38 -2.58 16 23 N -0.04 -0.40 13.35 60.35 0.81 0.40 16 24 N -0.37 -2.72 6.98 33.31 0.23 -2.49 16 25 H 0.45 1.96 8.32 -190.33 -1.58 0.38 16 26 C -0.17 -1.56 5.36 -90.62 -0.49 -2.05 16 27 C -0.17 -1.59 10.18 -26.69 -0.27 -1.87 16 28 C -0.17 -2.04 9.74 -26.69 -0.26 -2.30 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 32 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 2.10 7.40 -40.82 -0.30 1.80 16 36 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.12 1.91 5.02 -51.93 -0.26 1.65 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -34.76 370.98 -7.89 -42.65 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.22 Total: 3.31 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.76 Total: -7.33 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.57 Total: -41.31 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.16 Total: -14.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.76 -7.89 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578162732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.676 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds