Wall clock time and date at job start Tue Mar 31 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48496 * 109.47157 * 240.00225 * 3 2 1 5 5 H 1.48494 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46763 * 120.00509 * 3 2 1 7 7 C 1.38796 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00510 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99655 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46830 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00123 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00135 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47037 * 35.00355 * 14 13 11 16 16 C 1.52995 * 109.47320 * 154.99960 * 14 13 11 17 17 N 1.46501 * 109.47403 * 305.00330 * 16 14 13 18 18 C 1.34775 * 120.00236 * 179.97438 * 17 16 14 19 19 O 1.21618 * 120.00073 * 0.02562 * 18 17 16 20 20 C 1.47232 * 120.00331 * 179.97438 * 18 17 16 21 21 C 1.37004 * 127.19363 * 180.02562 * 20 18 17 22 22 N 1.33315 * 106.37501 * 180.02562 * 21 20 18 23 23 N 1.28514 * 109.44158 * 359.97438 * 22 21 20 24 24 N 1.28724 * 110.63693 * 0.02562 * 23 22 21 25 25 H 0.96991 * 126.03722 * 179.97438 * 24 23 22 26 26 C 1.52994 * 109.47011 * 275.00464 * 14 13 11 27 27 C 1.53004 * 117.49731 * 128.75014 * 26 14 13 28 28 C 1.53000 * 117.50423 * 60.08573 * 26 14 13 29 29 H 0.96996 * 120.00822 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47148 * 60.00305 * 10 9 7 31 31 H 1.08998 * 109.47485 * 299.99474 * 10 9 7 32 32 H 0.97002 * 119.99793 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.47721 * 185.00035 * 16 14 13 34 34 H 1.09005 * 109.47236 * 65.00213 * 16 14 13 35 35 H 0.97001 * 119.99684 * 0.02562 * 17 16 14 36 36 H 1.08000 * 126.80852 * 359.97438 * 21 20 18 37 37 H 1.09005 * 115.54939 * 274.40795 * 26 14 13 38 38 H 1.08994 * 117.49894 * 359.97438 * 27 26 14 39 39 H 1.09000 * 117.49529 * 145.02145 * 27 26 14 40 40 H 1.08997 * 117.50321 * 214.97978 * 28 26 14 41 41 H 1.09007 * 117.49274 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0003 14 6 2.3308 -7.7150 -0.0003 15 1 1.4149 -7.7601 -0.5894 16 6 3.3761 -8.6510 -0.6103 17 7 3.7476 -8.1664 -1.9420 18 6 4.6600 -8.8370 -2.6729 19 8 5.1746 -9.8448 -2.2271 20 6 5.0330 -8.3503 -4.0114 21 6 5.9360 -8.9122 -4.8751 22 7 5.9512 -8.1372 -5.9597 23 7 5.1272 -7.1637 -5.8014 24 7 4.5496 -7.2404 -4.6536 25 1 3.8890 -6.6218 -4.3048 26 6 2.0347 -8.1486 1.4368 27 6 0.6527 -8.7379 1.7263 28 6 1.0059 -7.3336 2.2229 29 1 -0.4851 0.8399 0.0004 30 1 3.1246 -3.7312 0.8895 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1833 -0.0006 33 1 2.9609 -9.6554 -0.6920 34 1 4.2597 -8.6739 0.0275 35 1 3.3375 -7.3624 -2.2974 36 1 6.5203 -9.8053 -4.7096 37 1 2.8815 -8.5568 1.9886 38 1 -0.0456 -8.8162 0.8931 39 1 0.5903 -9.5332 2.4690 40 1 1.1755 -7.2057 3.2920 41 1 0.5396 -6.4886 1.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578162732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:26 Heat of formation + Delta-G solvation = 21.542585 kcal Electronic energy + Delta-G solvation = -26220.128272 eV Core-core repulsion = 22263.365171 eV Total energy + Delta-G solvation = -3956.763101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.46528 -41.32646 -40.47502 -38.35966 -36.45063 -35.00635 -34.58560 -34.35839 -32.66230 -31.44476 -29.52482 -27.64849 -25.97215 -24.48021 -23.57953 -23.17658 -22.38076 -21.93957 -21.39460 -20.43580 -19.78083 -18.11876 -17.91048 -17.50414 -17.47326 -17.02051 -16.87500 -16.74580 -16.21364 -16.05192 -15.75414 -15.39220 -15.21392 -14.87428 -14.62351 -14.47404 -13.84156 -13.48969 -13.34476 -13.17252 -13.04064 -12.88689 -12.75546 -12.59127 -12.43503 -12.25790 -11.89586 -11.74971 -11.56655 -11.31231 -11.13306 -11.12761 -10.82931 -10.73749 -10.32448 -10.25555 -10.08819 -8.63853 -8.35147 -6.11375 -0.24981 1.15132 1.26855 1.37135 1.42228 1.46222 1.54689 1.60448 1.75826 1.90020 2.19437 2.28194 2.96589 2.99463 3.21859 3.33111 3.45056 3.55142 3.82814 3.90916 3.95536 4.06701 4.10220 4.20162 4.23454 4.32857 4.42546 4.54204 4.64461 4.80128 4.86424 4.90971 5.04490 5.09860 5.28210 5.35271 5.41750 5.48854 5.56561 6.11546 6.19021 6.48532 6.78280 7.07281 7.12406 7.26262 8.73226 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.003074 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.289911 B = 9104.994794 C =11774.570988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.142 6.142 10 C -0.134 4.134 11 C 0.542 3.458 12 O -0.547 6.547 13 N -0.709 5.709 14 C 0.170 3.830 15 H 0.084 0.916 16 C 0.126 3.874 17 N -0.713 5.713 18 C 0.607 3.393 19 O -0.539 6.539 20 C -0.066 4.066 21 C 0.031 3.969 22 N -0.298 5.298 23 N -0.062 5.062 24 N -0.354 5.354 25 H 0.465 0.535 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.203 4.203 29 H 0.270 0.730 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.408 0.592 36 H 0.223 0.777 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -19.960 -1.602 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.086 5.914 10 C -0.285 4.285 11 C 0.328 3.672 12 O -0.424 6.424 13 N -0.364 5.364 14 C 0.065 3.935 15 H 0.102 0.898 16 C 0.003 3.997 17 N -0.364 5.364 18 C 0.391 3.609 19 O -0.415 6.415 20 C -0.201 4.201 21 C -0.130 4.130 22 N -0.162 5.162 23 N -0.044 5.044 24 N -0.083 5.083 25 H 0.315 0.685 26 C -0.177 4.177 27 C -0.197 4.197 28 C -0.240 4.240 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.252 0.748 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.239 0.761 37 H 0.148 0.852 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.969 -20.226 -2.617 22.279 hybrid contribution 1.037 1.814 1.128 2.375 sum 10.006 -18.411 -1.489 21.007 Atomic orbital electron populations 1.70150 1.07850 1.28602 1.48035 1.26028 0.95864 1.03091 0.93857 0.85104 0.77906 0.76207 0.79441 1.18699 1.20590 1.18848 1.23183 0.95311 0.92367 1.58747 0.90092 1.85515 1.10119 0.98780 1.97024 1.23402 1.03648 0.94814 1.06634 1.19881 0.86314 0.86208 0.74831 1.90672 1.17025 1.85681 1.49029 1.45840 1.10230 1.04412 1.75906 1.20739 0.97550 0.80183 0.94986 0.89775 1.21718 0.98427 0.97843 0.81738 1.45780 1.42267 1.29877 1.18518 1.16583 0.79347 0.83081 0.81904 1.90888 1.54532 1.25230 1.70807 1.22306 1.05483 0.94036 0.98262 1.24334 0.98401 1.01722 0.88501 1.75021 1.15331 1.02023 1.23806 1.78257 1.06424 1.18507 1.01253 1.45660 1.30707 1.19997 1.11986 0.68499 1.22617 0.94430 1.04841 0.95818 1.23001 0.96918 0.96178 1.03614 1.23172 1.04359 0.96410 1.00055 0.92053 0.87864 0.87071 0.74833 0.88164 0.88641 0.75649 0.76062 0.85234 0.89218 0.86962 0.89076 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.00 13.22 21.65 0.29 -53.71 16 2 C 0.02 0.91 5.49 84.86 0.47 1.38 16 3 Si 0.99 42.10 29.55 68.60 2.03 44.13 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -29.65 9.50 67.95 0.65 -29.01 16 8 H 0.08 4.06 7.80 -2.91 -0.02 4.03 16 9 S -0.14 -7.19 20.57 -56.49 -1.16 -8.36 16 10 C -0.13 -4.49 6.16 71.24 0.44 -4.05 16 11 C 0.54 15.47 7.18 87.66 0.63 16.10 16 12 O -0.55 -20.34 12.89 -3.05 -0.04 -20.38 16 13 N -0.71 -11.82 4.50 -442.54 -1.99 -13.81 16 14 C 0.17 2.43 2.43 44.99 0.11 2.54 16 15 H 0.08 1.54 7.33 -2.39 -0.02 1.52 16 16 C 0.13 1.22 5.22 86.38 0.45 1.67 16 17 N -0.71 -6.94 5.38 -466.58 -2.51 -9.45 16 18 C 0.61 8.52 7.81 86.61 0.68 9.20 16 19 O -0.54 -10.76 16.92 -4.09 -0.07 -10.83 16 20 C -0.07 -0.93 7.17 40.40 0.29 -0.64 16 21 C 0.03 0.50 11.87 84.18 1.00 1.49 16 22 N -0.30 -6.27 12.35 -57.50 -0.71 -6.98 16 23 N -0.06 -1.23 13.35 37.02 0.49 -0.74 16 24 N -0.35 -4.60 6.98 -48.52 -0.34 -4.94 16 25 H 0.47 3.14 8.32 -219.90 -1.83 1.31 16 26 C -0.16 -2.42 5.36 -10.79 -0.06 -2.48 16 27 C -0.16 -2.71 10.18 30.62 0.31 -2.40 16 28 C -0.20 -4.66 9.74 30.62 0.30 -4.36 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.10 3.23 8.14 -2.40 -0.02 3.21 16 31 H 0.11 3.22 8.14 -2.40 -0.02 3.20 16 32 H 0.41 4.63 8.60 -92.71 -0.80 3.84 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 35 H 0.41 3.05 7.40 -92.71 -0.69 2.37 16 36 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.13 1.45 8.11 -2.38 -0.02 1.43 16 38 H 0.09 1.63 8.05 -2.39 -0.02 1.62 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.75 5.02 -2.38 -0.01 2.74 16 Total: -1.00 -78.39 370.98 -0.95 -79.34 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -2.19 Total: 16.27 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.26 Total: -10.55 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -4.77 Total: -89.63 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.11 Total: -31.21 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.16 Total: -8.36 kcal Total: -78.39 -0.95 -79.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578162732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.886 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds