Wall clock time and date at job start Tue Mar 31 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47045 * 275.39784 * 3 2 1 5 5 H 1.48501 * 109.47243 * 35.39939 * 3 2 1 6 6 H 1.48497 * 109.46780 * 155.39845 * 3 2 1 7 7 C 1.39942 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 342.02328 * 7 2 1 9 9 C 1.41393 * 120.00188 * 162.01378 * 7 2 1 10 10 C 1.40733 * 120.24434 * 330.00218 * 9 7 2 11 11 C 1.37600 * 119.74412 * 180.31647 * 10 9 7 12 12 C 1.38657 * 120.25060 * 359.65474 * 11 10 9 13 13 C 1.38609 * 120.49729 * 0.02857 * 12 11 10 14 14 C 1.37641 * 120.25251 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.12978 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47355 * 265.00586 * 15 14 13 17 17 O 1.21304 * 120.00461 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99765 * 179.97438 * 16 15 14 19 19 C 1.40603 * 120.00114 * 179.97438 * 18 16 15 20 20 C 1.35577 * 126.11488 * 359.70157 * 19 18 16 21 21 N 1.35875 * 107.78933 * 180.25723 * 20 19 18 22 22 H 0.96999 * 125.94337 * 179.97438 * 21 20 19 23 23 N 1.40050 * 108.10527 * 359.97438 * 21 20 19 24 24 C 1.31612 * 108.27963 * 0.02562 * 23 21 20 25 25 C 1.48417 * 125.97200 * 179.97438 * 24 23 21 26 26 N 1.34062 * 126.67621 * 179.68648 * 25 24 23 27 27 N 1.28991 * 107.26499 * 179.89505 * 26 25 24 28 28 N 1.28726 * 108.94653 * 0.37907 * 27 26 25 29 29 H 0.97001 * 125.33706 * 179.78609 * 28 27 26 30 30 N 1.28877 * 109.32523 * 359.75507 * 28 27 26 31 31 H 0.96992 * 119.99950 * 0.02562 * 1 2 3 32 32 H 1.08005 * 120.12869 * 359.97438 * 10 9 7 33 33 H 1.07999 * 119.87342 * 179.68491 * 11 10 9 34 34 H 1.07998 * 119.74986 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.87728 * 179.97438 * 13 12 11 36 36 H 1.09005 * 109.46801 * 145.00278 * 15 14 13 37 37 H 1.09001 * 109.46898 * 25.00769 * 15 14 13 38 38 H 0.96998 * 120.00302 * 0.02562 * 18 16 15 39 39 H 1.08001 * 126.10505 * 0.22962 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5013 2.6171 0.8110 6 1 3.5921 1.4099 0.5829 7 6 2.0080 -1.2119 0.0005 8 1 1.5076 -2.1243 0.2896 9 6 3.3701 -1.2420 -0.3775 10 6 3.8682 -0.3113 -1.3082 11 6 5.1941 -0.3541 -1.6738 12 6 6.0400 -1.3049 -1.1235 13 6 5.5618 -2.2223 -0.2010 14 6 4.2390 -2.1989 0.1785 15 6 3.7218 -3.1980 1.1812 16 6 3.1190 -4.3727 0.4548 17 8 3.1104 -4.3966 -0.7579 18 7 2.5901 -5.3972 1.1527 19 6 2.0271 -6.4930 0.4751 20 6 1.9451 -6.6446 -0.8697 21 7 1.3306 -7.8310 -1.1170 22 1 1.1368 -8.2002 -1.9928 23 7 1.0258 -8.4279 0.1127 24 6 1.4411 -7.6297 1.0733 25 6 1.3151 -7.8805 2.5307 26 7 1.7378 -7.0810 3.5202 27 7 1.4370 -7.6583 4.6338 28 7 0.8564 -8.7788 4.3802 29 1 0.5333 -9.4065 5.0455 30 7 0.7710 -8.9356 3.1039 31 1 -0.4850 0.8400 -0.0004 32 1 3.2110 0.4303 -1.7381 33 1 5.5773 0.3560 -2.3916 34 1 7.0794 -1.3309 -1.4159 35 1 6.2295 -2.9589 0.2210 36 1 2.9616 -2.7270 1.8044 37 1 4.5441 -3.5419 1.8086 38 1 2.5972 -5.3784 2.1225 39 1 2.3037 -5.9468 -1.6118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581859287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:01 Heat of formation + Delta-G solvation = 190.128037 kcal Electronic energy + Delta-G solvation = -28109.343531 eV Core-core repulsion = 24056.739643 eV Total energy + Delta-G solvation = -4052.603888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.66561 -41.35367 -39.19114 -37.56524 -34.84168 -34.14970 -33.69226 -33.54677 -31.92745 -31.01711 -30.28939 -29.08103 -26.72936 -25.30876 -24.81969 -24.57914 -22.26072 -21.33663 -20.92440 -20.12943 -19.36845 -19.11643 -18.31428 -17.36322 -17.30321 -16.14316 -15.81917 -15.52775 -15.35323 -15.22041 -14.58022 -14.30051 -14.19309 -13.69543 -13.52823 -13.32599 -12.98946 -12.65861 -12.54739 -12.12611 -11.87467 -11.66323 -11.42892 -11.39860 -11.35853 -11.22646 -11.08511 -10.76840 -10.68582 -10.53714 -10.21327 -9.67189 -9.52385 -9.40817 -9.26671 -9.08303 -7.65172 -7.56222 -7.46975 -6.89353 -4.43710 0.76716 1.19596 1.95910 2.05424 2.51941 2.62215 2.75962 2.78079 3.15825 3.22395 3.32055 3.36227 3.49895 3.80929 3.97815 4.02783 4.56226 4.83692 4.94967 5.23053 5.33864 5.49839 5.65704 5.72157 5.89715 5.94385 6.06439 6.13006 6.14412 6.22987 6.33980 6.62590 6.76374 6.87954 6.99468 7.17829 7.24706 7.34979 7.47217 7.70237 7.78259 7.85412 7.94828 7.98221 8.18638 8.40855 8.71133 8.72948 8.86810 10.12733 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003184 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.246125 B = 8791.024314 C = 9290.230333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.085 3.915 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.444 4.444 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.234 4.234 11 C -0.079 4.079 12 C -0.243 4.243 13 C -0.067 4.067 14 C -0.168 4.168 15 C -0.071 4.071 16 C 0.518 3.482 17 O -0.513 6.513 18 N -0.650 5.650 19 C 0.049 3.951 20 C 0.042 3.958 21 N -0.457 5.457 22 H 0.449 0.551 23 N -0.242 5.242 24 C 0.121 3.879 25 C 0.261 3.739 26 N -0.263 5.263 27 N -0.041 5.041 28 N -0.227 5.227 29 H 0.477 0.523 30 N -0.274 5.274 31 H 0.284 0.716 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.418 0.582 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -14.614 6.255 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.108 0.892 9 C 0.108 3.892 10 C -0.253 4.253 11 C -0.098 4.098 12 C -0.262 4.262 13 C -0.085 4.085 14 C -0.169 4.169 15 C -0.110 4.110 16 C 0.307 3.693 17 O -0.386 6.386 18 N -0.297 5.297 19 C -0.058 4.058 20 C -0.105 4.105 21 N -0.172 5.172 22 H 0.295 0.705 23 N -0.071 5.071 24 C -0.047 4.047 25 C -0.020 4.020 26 N -0.137 5.137 27 N -0.036 5.036 28 N -0.074 5.074 29 H 0.331 0.669 30 N -0.127 5.127 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.255 0.745 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.910 -15.374 5.784 16.451 hybrid contribution 0.074 0.778 0.074 0.785 sum 0.984 -14.596 5.858 15.758 Atomic orbital electron populations 1.69711 1.08095 1.30081 1.35419 1.26153 0.94650 1.01666 0.90882 0.86351 0.81368 0.79934 0.78752 1.19828 1.22033 1.16619 1.19430 0.93030 0.95787 1.38994 0.89220 1.17468 0.92582 0.90118 0.89064 1.20997 0.95544 1.04643 1.04114 1.20597 0.93917 0.97220 0.98038 1.20323 0.98161 1.01883 1.05867 1.20438 0.94578 0.96883 0.96635 1.19025 0.93093 1.01669 1.03154 1.20266 1.00898 0.91968 0.97900 1.21336 0.76983 0.82640 0.88316 1.90512 1.55788 1.78129 1.14213 1.43371 1.58493 1.17114 1.10758 1.17517 1.06542 0.90885 0.90862 1.23296 1.00088 0.89996 0.97169 1.46163 1.47485 1.16279 1.07229 0.70497 1.77433 1.21265 1.19557 0.88865 1.18154 1.04902 0.94576 0.87095 1.22048 0.98379 0.88288 0.93336 1.75951 1.19614 1.24322 0.93854 1.78943 1.09306 0.95148 1.20250 1.47748 1.38067 1.16130 1.05444 0.66877 1.75092 1.21826 1.24126 0.91629 0.90610 0.88370 0.89087 0.89057 0.89016 0.87668 0.89755 0.74514 0.76995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.53 13.93 55.55 0.77 -20.75 16 2 C 0.09 2.21 5.41 -17.34 -0.09 2.12 16 3 Si 0.91 20.74 24.52 -169.99 -4.17 16.57 16 4 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.24 -5.63 6.85 56.52 0.39 -5.24 16 7 C -0.44 -11.73 8.56 -37.74 -0.32 -12.06 16 8 H 0.09 2.49 6.99 -52.48 -0.37 2.13 16 9 C 0.11 2.77 5.10 -106.83 -0.54 2.22 16 10 C -0.23 -5.72 7.17 -38.87 -0.28 -6.00 16 11 C -0.08 -1.76 10.02 -39.66 -0.40 -2.15 16 12 C -0.24 -5.11 10.05 -39.29 -0.39 -5.50 16 13 C -0.07 -1.40 9.66 -39.66 -0.38 -1.78 16 14 C -0.17 -3.73 4.43 -103.91 -0.46 -4.19 16 15 C -0.07 -1.31 5.19 -29.04 -0.15 -1.47 16 16 C 0.52 9.81 7.39 -10.99 -0.08 9.73 16 17 O -0.51 -11.10 13.19 5.54 0.07 -11.03 16 18 N -0.65 -10.58 5.47 -9.89 -0.05 -10.63 16 19 C 0.05 0.78 6.92 -83.66 -0.58 0.20 16 20 C 0.04 0.62 10.85 -16.71 -0.18 0.44 16 21 N -0.46 -5.53 7.38 30.67 0.23 -5.30 16 22 H 0.45 3.63 8.96 -182.64 -1.64 1.99 16 23 N -0.24 -3.45 12.73 33.49 0.43 -3.02 16 24 C 0.12 1.82 7.18 -82.65 -0.59 1.22 16 25 C 0.26 3.61 8.24 -156.30 -1.29 2.32 16 26 N -0.26 -3.49 10.96 32.15 0.35 -3.14 16 27 N -0.04 -0.45 13.47 60.35 0.81 0.37 16 28 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 29 H 0.48 1.38 8.96 -340.36 -3.05 -1.67 16 30 N -0.27 -3.18 12.40 32.17 0.40 -2.78 16 31 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 32 H 0.10 2.41 4.75 -52.48 -0.25 2.16 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.11 1.97 7.15 -51.93 -0.37 1.60 16 37 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 38 H 0.42 6.11 7.16 -40.82 -0.29 5.82 16 39 H 0.21 3.33 5.83 -52.49 -0.31 3.02 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -33.20 339.12 -8.45 -41.65 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.13 Total: 9.24 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -5.75 Total: -14.90 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 3.41 Total: -46.65 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.17 Total: 16.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.20 -8.45 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.776 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds