Wall clock time and date at job start Tue Mar 31 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47045 * 275.39784 * 3 2 1 5 5 H 1.48501 * 109.47243 * 35.39939 * 3 2 1 6 6 H 1.48497 * 109.46780 * 155.39845 * 3 2 1 7 7 C 1.39942 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 342.02328 * 7 2 1 9 9 C 1.41393 * 120.00188 * 162.01378 * 7 2 1 10 10 C 1.40733 * 120.24434 * 330.00218 * 9 7 2 11 11 C 1.37600 * 119.74412 * 180.31647 * 10 9 7 12 12 C 1.38657 * 120.25060 * 359.65474 * 11 10 9 13 13 C 1.38609 * 120.49729 * 0.02857 * 12 11 10 14 14 C 1.37641 * 120.25251 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.12978 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47355 * 265.00586 * 15 14 13 17 17 O 1.21304 * 120.00461 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99765 * 179.97438 * 16 15 14 19 19 C 1.40603 * 120.00114 * 179.97438 * 18 16 15 20 20 C 1.35577 * 126.11488 * 359.70157 * 19 18 16 21 21 N 1.35875 * 107.78933 * 180.25723 * 20 19 18 22 22 H 0.96999 * 125.94337 * 179.97438 * 21 20 19 23 23 N 1.40050 * 108.10527 * 359.97438 * 21 20 19 24 24 C 1.31612 * 108.27963 * 0.02562 * 23 21 20 25 25 C 1.48417 * 125.97200 * 179.97438 * 24 23 21 26 26 N 1.34062 * 126.67621 * 179.68648 * 25 24 23 27 27 N 1.28991 * 107.26499 * 179.89505 * 26 25 24 28 28 N 1.28726 * 108.94653 * 0.37907 * 27 26 25 29 29 H 0.97001 * 125.33706 * 179.78609 * 28 27 26 30 30 N 1.28877 * 109.32523 * 359.75507 * 28 27 26 31 31 H 0.96992 * 119.99950 * 0.02562 * 1 2 3 32 32 H 1.08005 * 120.12869 * 359.97438 * 10 9 7 33 33 H 1.07999 * 119.87342 * 179.68491 * 11 10 9 34 34 H 1.07998 * 119.74986 * 180.02562 * 12 11 10 35 35 H 1.08003 * 119.87728 * 179.97438 * 13 12 11 36 36 H 1.09005 * 109.46801 * 145.00278 * 15 14 13 37 37 H 1.09001 * 109.46898 * 25.00769 * 15 14 13 38 38 H 0.96998 * 120.00302 * 0.02562 * 18 16 15 39 39 H 1.08001 * 126.10505 * 0.22962 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5013 2.6171 0.8110 6 1 3.5921 1.4099 0.5829 7 6 2.0080 -1.2119 0.0005 8 1 1.5076 -2.1243 0.2896 9 6 3.3701 -1.2420 -0.3775 10 6 3.8682 -0.3113 -1.3082 11 6 5.1941 -0.3541 -1.6738 12 6 6.0400 -1.3049 -1.1235 13 6 5.5618 -2.2223 -0.2010 14 6 4.2390 -2.1989 0.1785 15 6 3.7218 -3.1980 1.1812 16 6 3.1190 -4.3727 0.4548 17 8 3.1104 -4.3966 -0.7579 18 7 2.5901 -5.3972 1.1527 19 6 2.0271 -6.4930 0.4751 20 6 1.9451 -6.6446 -0.8697 21 7 1.3306 -7.8310 -1.1170 22 1 1.1368 -8.2002 -1.9928 23 7 1.0258 -8.4279 0.1127 24 6 1.4411 -7.6297 1.0733 25 6 1.3151 -7.8805 2.5307 26 7 1.7378 -7.0810 3.5202 27 7 1.4370 -7.6583 4.6338 28 7 0.8564 -8.7788 4.3802 29 1 0.5333 -9.4065 5.0455 30 7 0.7710 -8.9356 3.1039 31 1 -0.4850 0.8400 -0.0004 32 1 3.2110 0.4303 -1.7381 33 1 5.5773 0.3560 -2.3916 34 1 7.0794 -1.3309 -1.4159 35 1 6.2295 -2.9589 0.2210 36 1 2.9616 -2.7270 1.8044 37 1 4.5441 -3.5419 1.8086 38 1 2.5972 -5.3784 2.1225 39 1 2.3037 -5.9468 -1.6118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581859287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:01 Heat of formation + Delta-G solvation = 165.019723 kcal Electronic energy + Delta-G solvation = -28110.432309 eV Core-core repulsion = 24056.739643 eV Total energy + Delta-G solvation = -4053.692666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.56240 -42.52012 -40.67773 -39.24424 -35.95528 -35.42674 -35.27191 -34.69227 -33.54301 -32.10781 -32.07172 -30.39687 -28.28940 -26.61748 -26.27522 -25.52097 -23.59725 -23.06868 -22.05346 -21.55317 -20.74613 -20.25232 -19.40459 -19.17339 -18.25314 -17.56714 -17.45642 -16.75098 -16.62230 -16.57048 -16.07239 -15.91227 -15.40481 -15.18869 -15.11156 -14.77328 -14.48396 -14.21080 -13.80240 -13.67490 -13.45469 -13.08262 -12.77157 -12.63413 -12.57295 -12.48699 -12.36677 -12.30326 -12.16116 -11.95288 -11.89293 -11.47756 -11.31145 -10.91726 -10.78271 -10.46244 -9.33284 -9.23655 -8.89154 -8.80980 -6.38778 -0.16585 0.20913 0.84517 0.86397 0.97141 1.20583 1.31436 1.44112 1.53664 1.56482 1.62422 2.08273 2.18170 2.18885 2.68375 2.75357 2.94774 3.58647 3.74959 3.89253 4.08862 4.27125 4.34363 4.36580 4.43903 4.51451 4.62805 4.65190 4.80012 4.82402 5.00497 5.04915 5.22892 5.43821 5.56589 5.63139 5.73486 5.93671 6.02231 6.08055 6.12619 6.33077 6.36371 6.52270 6.59514 6.86686 6.97470 7.02350 7.30268 8.26816 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003184 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.246125 B = 8791.024314 C = 9290.230333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.049 3.951 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.468 4.468 8 H 0.059 0.941 9 C 0.087 3.913 10 C -0.256 4.256 11 C -0.091 4.091 12 C -0.229 4.229 13 C -0.075 4.075 14 C -0.169 4.169 15 C -0.072 4.072 16 C 0.518 3.482 17 O -0.548 6.548 18 N -0.638 5.638 19 C 0.022 3.978 20 C 0.044 3.956 21 N -0.436 5.436 22 H 0.466 0.534 23 N -0.246 5.246 24 C 0.119 3.881 25 C 0.242 3.758 26 N -0.283 5.283 27 N -0.040 5.040 28 N -0.193 5.193 29 H 0.498 0.502 30 N -0.273 5.273 31 H 0.289 0.711 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.425 0.575 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -15.664 6.917 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.165 4.165 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.084 3.916 10 C -0.276 4.276 11 C -0.109 4.109 12 C -0.248 4.248 13 C -0.093 4.093 14 C -0.170 4.170 15 C -0.111 4.111 16 C 0.307 3.693 17 O -0.424 6.424 18 N -0.285 5.285 19 C -0.085 4.085 20 C -0.104 4.104 21 N -0.153 5.153 22 H 0.316 0.684 23 N -0.075 5.075 24 C -0.049 4.049 25 C -0.040 4.040 26 N -0.157 5.157 27 N -0.035 5.035 28 N -0.045 5.045 29 H 0.358 0.642 30 N -0.127 5.127 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.264 0.736 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.012 -16.470 6.472 17.950 hybrid contribution -0.443 0.874 -0.113 0.987 sum 2.569 -15.596 6.358 17.037 Atomic orbital electron populations 1.69751 1.09136 1.30990 1.38211 1.26756 0.95164 1.04002 0.90582 0.85551 0.79938 0.77101 0.78840 1.19469 1.20851 1.17207 1.19350 0.94147 0.95080 1.41226 0.92269 1.17683 0.92438 0.91609 0.89827 1.21135 0.96848 1.04903 1.04668 1.20963 0.93107 0.98234 0.98562 1.20859 0.99676 1.00195 1.04080 1.20893 0.94421 0.97532 0.96459 1.19446 0.93639 1.01064 1.02891 1.20315 1.02087 0.91291 0.97418 1.21290 0.76999 0.83067 0.87910 1.90498 1.57467 1.78979 1.15478 1.43126 1.57654 1.16690 1.11010 1.17732 1.07948 0.91348 0.91467 1.23159 0.99933 0.90528 0.96806 1.46158 1.46212 1.15230 1.07710 0.68418 1.77396 1.21259 1.19625 0.89252 1.18263 1.04555 0.94117 0.87971 1.21977 0.99772 0.89200 0.93084 1.75930 1.20497 1.25055 0.94205 1.78884 1.09475 0.95692 1.19446 1.47800 1.36062 1.15633 1.05032 0.64193 1.75039 1.21454 1.23519 0.92728 0.90038 0.89291 0.86286 0.85513 0.85444 0.88418 0.85732 0.73646 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.55 13.93 21.83 0.30 -47.24 16 2 C 0.05 2.63 5.41 85.25 0.46 3.09 16 3 Si 0.96 43.60 24.52 68.60 1.68 45.28 16 4 H -0.27 -11.86 6.71 99.48 0.67 -11.20 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.25 -11.32 6.85 99.48 0.68 -10.64 16 7 C -0.47 -25.85 8.56 23.46 0.20 -25.65 16 8 H 0.06 3.51 6.99 -2.91 -0.02 3.49 16 9 C 0.09 4.39 5.10 -21.29 -0.11 4.28 16 10 C -0.26 -12.44 7.17 22.73 0.16 -12.28 16 11 C -0.09 -3.79 10.02 22.22 0.22 -3.56 16 12 C -0.23 -8.76 10.05 22.46 0.23 -8.54 16 13 C -0.08 -2.90 9.66 22.22 0.21 -2.68 16 14 C -0.17 -7.35 4.43 -19.40 -0.09 -7.44 16 15 C -0.07 -2.62 5.19 29.10 0.15 -2.47 16 16 C 0.52 19.73 7.39 87.66 0.65 20.38 16 17 O -0.55 -24.13 13.19 -3.10 -0.04 -24.17 16 18 N -0.64 -20.85 5.47 -303.57 -1.66 -22.51 16 19 C 0.02 0.69 6.92 37.84 0.26 0.95 16 20 C 0.04 1.32 10.85 83.45 0.91 2.22 16 21 N -0.44 -10.27 7.38 -56.88 -0.42 -10.69 16 22 H 0.47 7.05 8.96 -213.35 -1.91 5.14 16 23 N -0.25 -6.80 12.73 -47.95 -0.61 -7.41 16 24 C 0.12 3.52 7.18 42.61 0.31 3.83 16 25 C 0.24 6.46 8.24 137.36 1.13 7.59 16 26 N -0.28 -7.28 10.96 -52.20 -0.57 -7.85 16 27 N -0.04 -0.80 13.47 37.02 0.50 -0.30 16 28 N -0.19 -2.77 7.90 37.02 0.29 -2.48 16 29 H 0.50 1.63 8.96 -347.53 -3.12 -1.49 16 30 N -0.27 -5.93 12.40 -52.15 -0.65 -6.57 16 31 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 32 H 0.09 4.39 4.75 -2.91 -0.01 4.38 16 33 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.10 3.74 7.15 -2.38 -0.02 3.73 16 37 H 0.12 3.45 8.05 -2.39 -0.02 3.43 16 38 H 0.42 12.40 7.16 -92.71 -0.66 11.74 16 39 H 0.21 6.57 5.83 -2.91 -0.02 6.56 16 Total: -1.00 -73.41 339.12 -1.04 -74.45 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -4.56 Total: 29.78 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.70 Total: -20.27 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -2.81 Total: -105.06 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.04 Total: -24.17 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.68 Total: 45.28 kcal Total: -73.41 -1.04 -74.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.472 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds