Wall clock time and date at job start Tue Mar 31 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47181 * 275.39557 * 3 2 1 5 5 H 1.48501 * 109.46985 * 35.39295 * 3 2 1 6 6 H 1.48500 * 109.47354 * 155.39574 * 3 2 1 7 7 C 1.39953 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 342.02443 * 7 2 1 9 9 C 1.41394 * 119.99795 * 162.01767 * 7 2 1 10 10 C 1.40735 * 120.24455 * 330.00058 * 9 7 2 11 11 C 1.37600 * 119.74329 * 180.31905 * 10 9 7 12 12 C 1.38662 * 120.24979 * 359.65711 * 11 10 9 13 13 C 1.38611 * 120.49845 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24860 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12804 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47324 * 265.00281 * 15 14 13 17 17 O 1.21293 * 119.99935 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99735 * 180.02562 * 16 15 14 19 19 C 1.40005 * 119.99308 * 179.97438 * 18 16 15 20 20 N 1.31083 * 126.03152 * 0.20284 * 19 18 16 21 21 N 1.40004 * 108.47522 * 180.26345 * 20 19 18 22 22 H 0.97001 * 125.82945 * 179.67863 * 21 20 19 23 23 C 1.34810 * 108.33604 * 359.71900 * 21 20 19 24 24 C 1.36360 * 107.73112 * 359.97438 * 23 21 20 25 25 C 1.48462 * 126.24190 * 179.97438 * 24 23 21 26 26 N 1.33675 * 126.30434 * 180.02562 * 25 24 23 27 27 N 1.28566 * 109.85018 * 179.97438 * 26 25 24 28 28 N 1.28917 * 109.71924 * 0.02562 * 27 26 25 29 29 H 0.96998 * 126.43151 * 180.02562 * 28 27 26 30 30 N 1.31977 * 126.30557 * 0.03213 * 25 24 23 31 31 H 0.96997 * 120.00081 * 0.02562 * 1 2 3 32 32 H 1.07993 * 120.13093 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.87897 * 179.68387 * 11 10 9 34 34 H 1.07991 * 119.75048 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.87619 * 179.97438 * 13 12 11 36 36 H 1.08997 * 109.47166 * 144.99653 * 15 14 13 37 37 H 1.09004 * 109.46957 * 25.00300 * 15 14 13 38 38 H 0.96990 * 120.00112 * 359.97438 * 18 16 15 39 39 H 1.08004 * 126.13198 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3758 2.1122 -1.3939 5 1 1.5013 2.6170 0.8109 6 1 3.5922 1.4099 0.5829 7 6 2.0080 -1.2120 0.0005 8 1 1.5076 -2.1244 0.2896 9 6 3.3701 -1.2421 -0.3775 10 6 3.8682 -0.3113 -1.3081 11 6 5.1941 -0.3540 -1.6736 12 6 6.0400 -1.3050 -1.1234 13 6 5.5618 -2.2224 -0.2009 14 6 4.2389 -2.1989 0.1785 15 6 3.7217 -3.1980 1.1812 16 6 3.1187 -4.3726 0.4548 17 8 3.1094 -4.3959 -0.7579 18 7 2.5889 -5.3968 1.1526 19 6 2.0282 -6.4877 0.4777 20 7 1.9589 -6.6370 -0.8228 21 7 1.3235 -7.8542 -1.0964 22 1 1.1373 -8.2118 -1.9786 23 6 1.0139 -8.4439 0.0758 24 6 1.4412 -7.6245 1.0785 25 6 1.3071 -7.8767 2.5353 26 7 1.7250 -7.0741 3.5193 27 7 1.4477 -7.6001 4.6592 28 7 0.8565 -8.7322 4.4836 29 1 0.5415 -9.3314 5.1783 30 7 0.7534 -8.9346 3.0975 31 1 -0.4850 0.8400 -0.0004 32 1 3.2113 0.4307 -1.7374 33 1 5.5774 0.3560 -2.3915 34 1 7.0793 -1.3310 -1.4157 35 1 6.2295 -2.9591 0.2210 36 1 2.9617 -2.7271 1.8045 37 1 4.5441 -3.5420 1.8086 38 1 2.5960 -5.3779 2.1223 39 1 0.5167 -9.3947 0.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581859474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:58 Heat of formation + Delta-G solvation = 192.482953 kcal Electronic energy + Delta-G solvation = -28052.638606 eV Core-core repulsion = 24000.136835 eV Total energy + Delta-G solvation = -4052.501771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.32367 -41.37842 -39.15860 -37.51970 -34.65190 -33.86661 -33.50710 -33.12394 -31.90351 -30.40666 -30.19948 -29.93587 -26.98613 -25.01878 -24.80044 -23.53233 -22.50047 -21.28551 -20.71722 -19.91161 -19.48031 -19.05431 -17.78226 -17.26788 -16.68676 -16.29857 -16.14618 -15.51798 -15.28800 -14.96903 -14.54686 -14.28652 -14.22771 -13.68694 -13.47592 -13.36772 -13.18565 -12.62398 -12.33027 -12.07328 -11.81938 -11.51527 -11.41153 -11.23475 -11.14734 -10.97634 -10.73729 -10.70273 -10.67710 -10.65439 -10.17537 -9.63109 -9.48449 -9.20129 -9.04529 -8.87014 -8.25960 -7.51903 -7.42640 -6.85406 -4.39360 0.66352 1.41205 1.93523 2.08552 2.49296 2.68800 2.80554 2.85273 3.18929 3.25525 3.36082 3.39355 3.59706 3.81088 4.01204 4.06221 4.59246 4.70793 4.92595 5.10547 5.36361 5.38399 5.48891 5.66030 5.84320 5.94136 6.08272 6.16899 6.26892 6.31214 6.36942 6.65989 6.80281 6.88750 7.01782 7.03653 7.28992 7.32815 7.52488 7.74506 7.83124 7.93209 7.99300 8.07343 8.22932 8.45135 8.76626 8.78987 8.90826 10.16796 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003186 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.073274 B = 8785.579936 C = 9288.399651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.233 4.233 11 C -0.079 4.079 12 C -0.243 4.243 13 C -0.066 4.066 14 C -0.169 4.169 15 C -0.070 4.070 16 C 0.507 3.493 17 O -0.469 6.469 18 N -0.644 5.644 19 C 0.353 3.647 20 N -0.267 5.267 21 N -0.462 5.462 22 H 0.448 0.552 23 C 0.132 3.868 24 C -0.206 4.206 25 C 0.304 3.696 26 N -0.308 5.308 27 N 0.017 4.983 28 N -0.302 5.302 29 H 0.468 0.532 30 N -0.308 5.308 31 H 0.283 0.717 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.425 0.575 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -17.793 7.421 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.108 3.892 10 C -0.253 4.253 11 C -0.097 4.097 12 C -0.262 4.262 13 C -0.085 4.085 14 C -0.171 4.171 15 C -0.109 4.109 16 C 0.294 3.706 17 O -0.336 6.336 18 N -0.298 5.298 19 C 0.092 3.908 20 N -0.097 5.097 21 N -0.167 5.167 22 H 0.294 0.706 23 C -0.024 4.024 24 C -0.225 4.225 25 C 0.023 3.977 26 N -0.187 5.187 27 N 0.020 4.980 28 N -0.149 5.149 29 H 0.323 0.677 30 N -0.152 5.152 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.265 0.735 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.062 -16.987 6.011 18.019 hybrid contribution -0.555 -0.435 0.786 1.056 sum -0.493 -17.421 6.797 18.707 Atomic orbital electron populations 1.69715 1.08103 1.30031 1.35503 1.26158 0.94655 1.01663 0.90876 0.86344 0.81365 0.79888 0.78748 1.19827 1.22039 1.16596 1.19434 0.93020 0.95779 1.38958 0.89269 1.17471 0.92586 0.90105 0.89038 1.20990 0.95542 1.04625 1.04096 1.20595 0.93909 0.97234 0.98006 1.20321 0.98173 1.01882 1.05848 1.20439 0.94576 0.96833 0.96624 1.19030 0.93128 1.01667 1.03263 1.20282 1.00888 0.91836 0.97920 1.21578 0.77548 0.82707 0.88807 1.90784 1.52394 1.76892 1.13517 1.43630 1.58497 1.16626 1.11011 1.19299 0.93691 0.87981 0.89796 1.78270 1.20892 0.98569 1.12015 1.46219 1.46315 1.16260 1.07943 0.70602 1.22448 0.96624 0.98244 0.85061 1.16773 1.19990 0.99383 0.86351 1.22540 0.93175 0.87847 0.94161 1.75305 1.23406 1.26560 0.93387 1.78331 1.05021 0.95108 1.19511 1.50930 1.41370 1.15864 1.06710 0.67744 1.78828 1.26150 1.22671 0.87513 0.90644 0.88356 0.89059 0.89031 0.88997 0.87619 0.89698 0.73535 0.79333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 13.93 55.55 0.77 -21.31 16 2 C 0.09 2.27 5.41 -17.34 -0.09 2.18 16 3 Si 0.91 21.25 24.52 -169.99 -4.17 17.08 16 4 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.75 6.85 56.52 0.39 -5.36 16 7 C -0.44 -12.18 8.56 -37.74 -0.32 -12.50 16 8 H 0.09 2.59 6.99 -52.49 -0.37 2.22 16 9 C 0.11 2.90 5.10 -106.83 -0.54 2.35 16 10 C -0.23 -5.93 7.17 -38.87 -0.28 -6.21 16 11 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 12 C -0.24 -5.33 10.05 -39.29 -0.39 -5.72 16 13 C -0.07 -1.46 9.66 -39.66 -0.38 -1.84 16 14 C -0.17 -3.96 4.43 -103.91 -0.46 -4.42 16 15 C -0.07 -1.36 5.19 -29.03 -0.15 -1.52 16 16 C 0.51 10.51 7.39 -10.98 -0.08 10.43 16 17 O -0.47 -11.69 14.76 5.55 0.08 -11.61 16 18 N -0.64 -11.20 5.44 -10.96 -0.06 -11.26 16 19 C 0.35 5.96 7.81 -154.29 -1.20 4.75 16 20 N -0.27 -4.70 10.90 31.58 0.34 -4.35 16 21 N -0.46 -5.19 7.32 30.62 0.22 -4.96 16 22 H 0.45 3.27 8.96 -182.67 -1.64 1.63 16 23 C 0.13 1.28 11.93 -16.92 -0.20 1.08 16 24 C -0.21 -2.73 6.10 -105.18 -0.64 -3.37 16 25 C 0.30 3.83 8.14 -156.46 -1.27 2.56 16 26 N -0.31 -4.04 10.75 32.13 0.35 -3.70 16 27 N 0.02 0.18 13.42 60.35 0.81 0.99 16 28 N -0.30 -2.42 8.44 60.35 0.51 -1.91 16 29 H 0.47 1.50 8.96 -331.93 -2.98 -1.47 16 30 N -0.31 -3.19 12.89 32.14 0.41 -2.78 16 31 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 32 H 0.10 2.49 4.74 -52.49 -0.25 2.24 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.11 2.06 7.15 -51.93 -0.37 1.69 16 37 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 38 H 0.43 6.41 7.16 -40.82 -0.29 6.12 16 39 H 0.19 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -36.68 342.55 -9.16 -45.85 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.17 Total: 7.25 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -6.43 Total: -14.44 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 3.36 Total: -49.28 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.17 Total: 17.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.68 -9.16 -45.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.329 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds