Wall clock time and date at job start Tue Mar 31 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47181 * 275.39557 * 3 2 1 5 5 H 1.48501 * 109.46985 * 35.39295 * 3 2 1 6 6 H 1.48500 * 109.47354 * 155.39574 * 3 2 1 7 7 C 1.39953 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 342.02443 * 7 2 1 9 9 C 1.41394 * 119.99795 * 162.01767 * 7 2 1 10 10 C 1.40735 * 120.24455 * 330.00058 * 9 7 2 11 11 C 1.37600 * 119.74329 * 180.31905 * 10 9 7 12 12 C 1.38662 * 120.24979 * 359.65711 * 11 10 9 13 13 C 1.38611 * 120.49845 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24860 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12804 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47324 * 265.00281 * 15 14 13 17 17 O 1.21293 * 119.99935 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99735 * 180.02562 * 16 15 14 19 19 C 1.40005 * 119.99308 * 179.97438 * 18 16 15 20 20 N 1.31083 * 126.03152 * 0.20284 * 19 18 16 21 21 N 1.40004 * 108.47522 * 180.26345 * 20 19 18 22 22 H 0.97001 * 125.82945 * 179.67863 * 21 20 19 23 23 C 1.34810 * 108.33604 * 359.71900 * 21 20 19 24 24 C 1.36360 * 107.73112 * 359.97438 * 23 21 20 25 25 C 1.48462 * 126.24190 * 179.97438 * 24 23 21 26 26 N 1.33675 * 126.30434 * 180.02562 * 25 24 23 27 27 N 1.28566 * 109.85018 * 179.97438 * 26 25 24 28 28 N 1.28917 * 109.71924 * 0.02562 * 27 26 25 29 29 H 0.96998 * 126.43151 * 180.02562 * 28 27 26 30 30 N 1.31977 * 126.30557 * 0.03213 * 25 24 23 31 31 H 0.96997 * 120.00081 * 0.02562 * 1 2 3 32 32 H 1.07993 * 120.13093 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.87897 * 179.68387 * 11 10 9 34 34 H 1.07991 * 119.75048 * 180.02562 * 12 11 10 35 35 H 1.08006 * 119.87619 * 179.97438 * 13 12 11 36 36 H 1.08997 * 109.47166 * 144.99653 * 15 14 13 37 37 H 1.09004 * 109.46957 * 25.00300 * 15 14 13 38 38 H 0.96990 * 120.00112 * 359.97438 * 18 16 15 39 39 H 1.08004 * 126.13198 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3758 2.1122 -1.3939 5 1 1.5013 2.6170 0.8109 6 1 3.5922 1.4099 0.5829 7 6 2.0080 -1.2120 0.0005 8 1 1.5076 -2.1244 0.2896 9 6 3.3701 -1.2421 -0.3775 10 6 3.8682 -0.3113 -1.3081 11 6 5.1941 -0.3540 -1.6736 12 6 6.0400 -1.3050 -1.1234 13 6 5.5618 -2.2224 -0.2009 14 6 4.2389 -2.1989 0.1785 15 6 3.7217 -3.1980 1.1812 16 6 3.1187 -4.3726 0.4548 17 8 3.1094 -4.3959 -0.7579 18 7 2.5889 -5.3968 1.1526 19 6 2.0282 -6.4877 0.4777 20 7 1.9589 -6.6370 -0.8228 21 7 1.3235 -7.8542 -1.0964 22 1 1.1373 -8.2118 -1.9786 23 6 1.0139 -8.4439 0.0758 24 6 1.4412 -7.6245 1.0785 25 6 1.3071 -7.8767 2.5353 26 7 1.7250 -7.0741 3.5193 27 7 1.4477 -7.6001 4.6592 28 7 0.8565 -8.7322 4.4836 29 1 0.5415 -9.3314 5.1783 30 7 0.7534 -8.9346 3.0975 31 1 -0.4850 0.8400 -0.0004 32 1 3.2113 0.4307 -1.7374 33 1 5.5774 0.3560 -2.3915 34 1 7.0793 -1.3310 -1.4157 35 1 6.2295 -2.9591 0.2210 36 1 2.9617 -2.7271 1.8045 37 1 4.5441 -3.5420 1.8086 38 1 2.5960 -5.3779 2.1223 39 1 0.5167 -9.3947 0.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581859474.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:58 Heat of formation + Delta-G solvation = 164.337142 kcal Electronic energy + Delta-G solvation = -28053.859100 eV Core-core repulsion = 24000.136835 eV Total energy + Delta-G solvation = -4053.722265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.16855 -42.45257 -40.73837 -39.27706 -35.96876 -35.45989 -34.84263 -33.97232 -33.58377 -32.15107 -31.57912 -30.90097 -28.66112 -26.72965 -25.83210 -24.42541 -23.87462 -23.11335 -21.82142 -21.41697 -20.71402 -20.21940 -19.22179 -18.64952 -17.76543 -17.63141 -17.53498 -17.17957 -16.71246 -16.14134 -15.91396 -15.86657 -15.45485 -15.17365 -15.09795 -14.83823 -14.50064 -14.30376 -13.82234 -13.68271 -13.16536 -13.11516 -12.82826 -12.65901 -12.48569 -12.37222 -12.09254 -12.05034 -11.96694 -11.81413 -11.80605 -11.50595 -11.35567 -10.94524 -10.81922 -9.95299 -9.40908 -9.36785 -9.27389 -8.83696 -6.42346 -0.15239 0.55929 0.80516 0.89800 0.93664 1.26536 1.29193 1.41313 1.52079 1.57150 1.70214 2.16367 2.21873 2.30139 2.67088 2.83784 3.13653 3.54152 3.85974 3.91849 4.09400 4.27194 4.30950 4.39730 4.44654 4.49082 4.58712 4.60459 4.75386 4.85758 4.96443 5.00642 5.19406 5.40512 5.59496 5.69546 5.78041 5.89364 5.97394 6.02386 6.08562 6.32542 6.39724 6.49200 6.74658 6.83675 6.93510 7.12764 7.29422 8.24552 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003186 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.073274 B = 8785.579936 C = 9288.399651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.048 3.952 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.470 4.470 8 H 0.054 0.946 9 C 0.086 3.914 10 C -0.257 4.257 11 C -0.090 4.090 12 C -0.230 4.230 13 C -0.076 4.076 14 C -0.173 4.173 15 C -0.070 4.070 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.635 5.635 19 C 0.327 3.673 20 N -0.326 5.326 21 N -0.447 5.447 22 H 0.464 0.536 23 C 0.167 3.833 24 C -0.224 4.224 25 C 0.292 3.708 26 N -0.340 5.340 27 N 0.011 4.989 28 N -0.271 5.271 29 H 0.488 0.512 30 N -0.297 5.297 31 H 0.290 0.710 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.434 0.566 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -19.649 8.149 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.084 3.916 10 C -0.276 4.276 11 C -0.108 4.108 12 C -0.248 4.248 13 C -0.094 4.094 14 C -0.175 4.175 15 C -0.109 4.109 16 C 0.297 3.703 17 O -0.392 6.392 18 N -0.289 5.289 19 C 0.067 3.933 20 N -0.156 5.156 21 N -0.156 5.156 22 H 0.314 0.686 23 C 0.011 3.989 24 C -0.242 4.242 25 C 0.011 3.989 26 N -0.218 5.218 27 N 0.015 4.985 28 N -0.123 5.123 29 H 0.348 0.652 30 N -0.142 5.142 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.275 0.725 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.639 -18.881 6.781 20.129 hybrid contribution -0.951 -0.150 0.581 1.125 sum 0.688 -19.031 7.362 20.417 Atomic orbital electron populations 1.69753 1.09200 1.31099 1.38029 1.26808 0.95231 1.04138 0.90439 0.85498 0.79919 0.76756 0.78933 1.19394 1.20474 1.17142 1.19337 0.94177 0.95037 1.41458 0.92781 1.17699 0.92445 0.91646 0.89847 1.21137 0.96918 1.04905 1.04617 1.20980 0.93043 0.98239 0.98497 1.20870 0.99775 1.00170 1.04026 1.20905 0.94397 0.97532 0.96538 1.19473 0.93751 1.01135 1.03117 1.20342 1.02150 0.91026 0.97418 1.21625 0.77174 0.83325 0.88213 1.90748 1.54820 1.78172 1.15450 1.43329 1.57813 1.16432 1.11297 1.19547 0.94834 0.88716 0.90251 1.78101 1.22747 1.01762 1.13022 1.46151 1.45282 1.14635 1.09502 0.68646 1.23185 0.93890 0.98663 0.83130 1.16943 1.20851 0.98898 0.87557 1.22472 0.94049 0.88470 0.93945 1.75273 1.24774 1.27708 0.94004 1.78280 1.05524 0.95848 1.18897 1.50965 1.39435 1.15252 1.06676 0.65243 1.78765 1.25485 1.21724 0.88235 0.89924 0.89153 0.86022 0.85327 0.85466 0.88196 0.85448 0.72471 0.74056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.03 13.93 21.83 0.30 -48.72 16 2 C 0.05 2.66 5.41 85.26 0.46 3.12 16 3 Si 0.96 44.91 24.52 68.60 1.68 46.60 16 4 H -0.27 -12.13 6.71 99.48 0.67 -11.46 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -11.58 6.85 99.48 0.68 -10.90 16 7 C -0.47 -27.34 8.56 23.46 0.20 -27.14 16 8 H 0.05 3.41 6.99 -2.91 -0.02 3.39 16 9 C 0.09 4.61 5.10 -21.29 -0.11 4.50 16 10 C -0.26 -13.07 7.17 22.73 0.16 -12.91 16 11 C -0.09 -3.93 10.02 22.22 0.22 -3.71 16 12 C -0.23 -9.31 10.05 22.46 0.23 -9.08 16 13 C -0.08 -3.14 9.66 22.22 0.21 -2.93 16 14 C -0.17 -8.09 4.43 -19.40 -0.09 -8.18 16 15 C -0.07 -2.78 5.19 29.10 0.15 -2.63 16 16 C 0.51 21.87 7.39 87.66 0.65 22.52 16 17 O -0.52 -27.14 14.76 -3.07 -0.05 -27.18 16 18 N -0.64 -22.87 5.44 -306.97 -1.67 -24.54 16 19 C 0.33 11.24 7.81 133.65 1.04 12.28 16 20 N -0.33 -11.72 10.90 -54.00 -0.59 -12.31 16 21 N -0.45 -9.56 7.32 -57.04 -0.42 -9.98 16 22 H 0.46 6.12 8.96 -213.38 -1.91 4.21 16 23 C 0.17 2.84 11.93 83.80 1.00 3.84 16 24 C -0.22 -5.73 6.10 -20.23 -0.12 -5.85 16 25 C 0.29 6.98 8.14 137.43 1.12 8.10 16 26 N -0.34 -8.71 10.75 -52.27 -0.56 -9.27 16 27 N 0.01 0.22 13.42 37.02 0.50 0.71 16 28 N -0.27 -3.72 8.44 37.02 0.31 -3.41 16 29 H 0.49 1.77 8.96 -340.36 -3.05 -1.28 16 30 N -0.30 -5.43 12.89 -52.23 -0.67 -6.10 16 31 H 0.29 15.04 8.30 -92.71 -0.77 14.27 16 32 H 0.09 4.65 4.74 -2.91 -0.01 4.63 16 33 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 34 H 0.13 4.27 8.06 -2.92 -0.02 4.25 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.10 4.08 7.15 -2.39 -0.02 4.06 16 37 H 0.13 3.84 8.05 -2.38 -0.02 3.82 16 38 H 0.43 13.51 7.16 -92.72 -0.66 12.85 16 39 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -85.15 342.55 -0.54 -85.69 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -4.50 Total: 26.60 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.13 Total: -18.07 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -2.80 Total: -113.63 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.68 Total: 46.60 kcal Total: -85.15 -0.54 -85.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859474.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.025 kcal (2) G-P(sol) polarization free energy of solvation -85.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds