Wall clock time and date at job start Tue Mar 31 2020 22:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47138 * 300.00500 * 3 2 1 6 6 H 1.48502 * 109.46973 * 59.99975 * 3 2 1 7 7 C 1.38806 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99896 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99447 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99442 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46971 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00077 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47326 * 184.98215 * 14 13 11 16 16 H 1.09000 * 112.73847 * 314.85348 * 15 14 13 17 17 C 1.53613 * 113.55871 * 85.60024 * 15 14 13 18 18 C 1.53497 * 83.30665 * 140.82542 * 17 15 14 19 19 N 1.47065 * 113.46852 * 184.10750 * 15 14 13 20 20 C 1.34773 * 136.05802 * 38.01340 * 19 15 14 21 21 O 1.21275 * 119.99740 * 355.05705 * 20 19 15 22 22 C 1.50697 * 120.00037 * 175.06388 * 20 19 15 23 23 C 1.50701 * 109.47262 * 179.97438 * 22 20 19 24 24 N 1.33248 * 125.52566 * 269.69406 * 23 22 20 25 25 C 1.30833 * 109.82604 * 179.85113 * 24 23 22 26 26 N 1.34431 * 108.07492 * 0.40760 * 25 24 23 27 27 H 0.97005 * 126.81580 * 179.72155 * 26 25 24 28 28 N 1.30709 * 125.52548 * 90.00091 * 23 22 20 29 29 H 0.96998 * 120.00089 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47647 * 59.99789 * 10 9 7 31 31 H 1.09003 * 109.46986 * 299.99341 * 10 9 7 32 32 H 0.97001 * 120.00081 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46592 * 64.98752 * 14 13 11 34 34 H 1.09001 * 109.47176 * 304.98740 * 14 13 11 35 35 H 1.09010 * 114.20371 * 27.25957 * 17 15 14 36 36 H 1.08997 * 114.24442 * 254.40520 * 17 15 14 37 37 H 1.08999 * 113.46790 * 219.17311 * 18 17 15 38 38 H 1.09006 * 113.46316 * 88.79031 * 18 17 15 39 39 H 1.08992 * 109.47405 * 299.99742 * 22 20 19 40 40 H 1.09004 * 109.47302 * 59.99581 * 22 20 19 41 41 H 1.07993 * 125.96128 * 180.12164 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0049 14 6 2.3305 -7.7151 -0.0050 15 6 3.4975 -8.6967 0.1187 16 1 4.3311 -8.4450 -0.5370 17 6 3.9225 -8.9657 1.5702 18 6 4.0918 -10.4050 1.0645 19 7 3.0887 -10.1067 0.0312 20 6 2.1898 -10.8140 -0.6816 21 8 1.4184 -10.2424 -1.4225 22 6 2.1432 -12.3152 -0.5578 23 6 1.0584 -12.8595 -1.4511 24 7 -0.2110 -13.0554 -1.0965 25 6 -0.8859 -13.5346 -2.1097 26 7 -0.0425 -13.6649 -3.1484 27 1 -0.2574 -13.9994 -4.0332 28 7 1.2114 -13.2212 -2.6978 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7321 0.8871 31 1 3.1245 -3.7305 -0.8929 32 1 3.8010 -6.1835 -0.0051 33 1 1.7952 -7.9025 -0.9358 34 1 1.6521 -7.8491 0.8376 35 1 3.1231 -8.8397 2.3005 36 1 4.8547 -8.4813 1.8607 37 1 3.7656 -11.1583 1.7816 38 1 5.0835 -10.6093 0.6606 39 1 3.1041 -12.7344 -0.8558 40 1 1.9328 -12.5882 0.4764 41 1 -1.9361 -13.7864 -2.1099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584585427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:38 Heat of formation + Delta-G solvation = 59.155136 kcal Electronic energy + Delta-G solvation = -25459.517705 eV Core-core repulsion = 21504.385606 eV Total energy + Delta-G solvation = -3955.132099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45858 -40.89048 -38.97377 -38.11717 -34.40154 -33.66575 -32.39809 -32.09887 -30.89628 -29.92559 -28.72608 -27.58274 -25.44900 -23.34827 -23.30969 -22.74251 -20.87089 -20.40183 -19.13489 -18.66489 -17.88989 -17.47013 -16.69620 -16.40921 -15.82612 -15.71958 -15.53050 -15.13752 -15.01162 -14.77779 -14.44326 -13.95710 -13.89250 -13.75683 -13.25901 -13.04085 -12.95596 -12.54641 -12.51587 -12.41136 -12.27995 -11.90101 -11.66584 -11.05145 -10.99143 -10.98394 -10.72520 -10.54009 -10.40471 -10.20621 -9.88751 -9.77525 -9.35094 -9.08491 -9.04837 -8.80429 -8.18471 -6.46145 -6.18604 -3.88807 1.23821 2.11418 2.32349 2.37087 2.67186 3.12741 3.17453 3.23628 3.30990 3.36901 3.67415 3.81336 3.89113 4.12643 4.22148 4.23143 4.50197 4.54909 4.61159 4.78085 4.90166 4.92294 4.98753 5.08253 5.16383 5.22664 5.32379 5.37595 5.62363 5.70413 5.81180 5.83447 5.94771 5.99127 6.10839 6.17562 6.63939 6.65578 7.35429 7.62721 7.70500 7.74790 7.85878 8.38420 8.68529 9.26562 10.88870 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.001879 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.705726 B =14901.817088 C =15933.985760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.126 3.874 16 H 0.100 0.900 17 C -0.151 4.151 18 C 0.099 3.901 19 N -0.644 5.644 20 C 0.549 3.451 21 O -0.516 6.516 22 C -0.040 4.040 23 C 0.246 3.754 24 N -0.534 5.534 25 C 0.266 3.734 26 N -0.482 5.482 27 H 0.442 0.558 28 N -0.304 5.304 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -31.228 0.365 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.388 6.388 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.022 3.978 16 H 0.118 0.882 17 C -0.188 4.188 18 C -0.024 4.024 19 N -0.382 5.382 20 C 0.337 3.663 21 O -0.390 6.390 22 C -0.082 4.082 23 C -0.038 4.038 24 N -0.261 5.261 25 C -0.033 4.033 26 N -0.200 5.200 27 H 0.288 0.712 28 N -0.134 5.134 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.549 -31.189 -0.195 32.090 hybrid contribution 2.002 0.991 -0.748 2.355 sum 9.550 -30.198 -0.942 31.686 Atomic orbital electron populations 1.70033 1.05950 1.27311 1.46969 1.25006 0.95032 0.99048 0.94610 0.86111 0.79561 0.81898 0.77869 1.19625 1.20606 1.20582 1.22914 0.94941 0.91661 1.58752 0.90863 1.85457 1.04974 0.96309 1.96695 1.23518 1.06520 0.95286 1.04909 1.20301 0.86528 0.86186 0.75275 1.90725 1.15389 1.85511 1.47131 1.45844 1.09832 1.05225 1.78305 1.21436 0.95179 0.80221 1.04020 1.22905 0.96415 0.82019 0.96469 0.88236 1.23610 1.03543 0.95739 0.95953 1.23024 0.92202 0.98501 0.88692 1.49608 1.36910 1.09845 1.41870 1.19778 0.79593 0.88209 0.78759 1.90804 1.39254 1.71421 1.37516 1.19768 0.96306 0.92068 1.00057 1.23249 0.92470 0.97622 0.90443 1.70367 1.04083 1.21370 1.30328 1.26102 0.98862 0.95393 0.82971 1.48073 1.06841 1.50414 1.14718 0.71195 1.77951 1.01394 1.21142 1.12874 0.92256 0.89169 0.89228 0.76966 0.90217 0.90857 0.88062 0.88634 0.89813 0.89307 0.86493 0.86003 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.44 7.85 -10.99 -0.09 10.35 16 12 O -0.51 -12.56 15.86 5.55 0.09 -12.47 16 13 N -0.74 -10.28 5.55 -60.29 -0.33 -10.61 16 14 C 0.12 1.59 5.39 -4.04 -0.02 1.56 16 15 C 0.13 1.10 4.08 -72.33 -0.30 0.80 16 16 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 17 C -0.15 -0.82 8.03 -26.16 -0.21 -1.03 16 18 C 0.10 0.42 8.41 -8.50 -0.07 0.35 16 19 N -0.64 -5.74 3.57 -177.24 -0.63 -6.38 16 20 C 0.55 6.47 7.99 -10.99 -0.09 6.38 16 21 O -0.52 -8.79 15.41 5.56 0.09 -8.70 16 22 C -0.04 -0.34 6.16 -29.04 -0.18 -0.52 16 23 C 0.25 2.80 6.63 -156.85 -1.04 1.76 16 24 N -0.53 -6.06 11.19 -11.98 -0.13 -6.20 16 25 C 0.27 1.97 13.13 -90.65 -1.19 0.78 16 26 N -0.48 -3.61 7.45 29.53 0.22 -3.39 16 27 H 0.44 1.56 8.96 -182.33 -1.63 -0.08 16 28 N -0.30 -3.44 12.80 32.42 0.41 -3.03 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 32 H 0.40 3.99 8.48 -40.82 -0.35 3.65 16 33 H 0.08 1.39 7.05 -51.93 -0.37 1.02 16 34 H 0.07 1.11 7.90 -51.93 -0.41 0.70 16 35 H 0.10 0.66 7.96 -51.92 -0.41 0.25 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.22 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -44.02 374.97 -10.42 -54.45 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.52 Total: -0.60 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.76 Total: 4.40 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.27 Total: -55.44 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.17 Total: -21.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -44.02 -10.42 -54.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584585427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.602 kcal (2) G-P(sol) polarization free energy of solvation -44.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds