Wall clock time and date at job start Tue Mar 31 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47138 * 300.00500 * 3 2 1 6 6 H 1.48502 * 109.46973 * 59.99975 * 3 2 1 7 7 C 1.38806 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99896 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99447 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99442 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46971 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00077 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47326 * 184.98215 * 14 13 11 16 16 H 1.09000 * 112.73847 * 314.85348 * 15 14 13 17 17 C 1.53613 * 113.55871 * 85.60024 * 15 14 13 18 18 C 1.53497 * 83.30665 * 140.82542 * 17 15 14 19 19 N 1.47065 * 113.46852 * 184.10750 * 15 14 13 20 20 C 1.34773 * 136.05802 * 38.01340 * 19 15 14 21 21 O 1.21275 * 119.99740 * 355.05705 * 20 19 15 22 22 C 1.50697 * 120.00037 * 175.06388 * 20 19 15 23 23 C 1.50701 * 109.47262 * 179.97438 * 22 20 19 24 24 N 1.33248 * 125.52566 * 269.69406 * 23 22 20 25 25 C 1.30833 * 109.82604 * 179.85113 * 24 23 22 26 26 N 1.34431 * 108.07492 * 0.40760 * 25 24 23 27 27 H 0.97005 * 126.81580 * 179.72155 * 26 25 24 28 28 N 1.30709 * 125.52548 * 90.00091 * 23 22 20 29 29 H 0.96998 * 120.00089 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47647 * 59.99789 * 10 9 7 31 31 H 1.09003 * 109.46986 * 299.99341 * 10 9 7 32 32 H 0.97001 * 120.00081 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46592 * 64.98752 * 14 13 11 34 34 H 1.09001 * 109.47176 * 304.98740 * 14 13 11 35 35 H 1.09010 * 114.20371 * 27.25957 * 17 15 14 36 36 H 1.08997 * 114.24442 * 254.40520 * 17 15 14 37 37 H 1.08999 * 113.46790 * 219.17311 * 18 17 15 38 38 H 1.09006 * 113.46316 * 88.79031 * 18 17 15 39 39 H 1.08992 * 109.47405 * 299.99742 * 22 20 19 40 40 H 1.09004 * 109.47302 * 59.99581 * 22 20 19 41 41 H 1.07993 * 125.96128 * 180.12164 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9875 -5.3027 -0.0036 12 8 0.7912 -5.5023 -0.0029 13 7 2.8442 -6.3431 -0.0049 14 6 2.3305 -7.7151 -0.0050 15 6 3.4975 -8.6967 0.1187 16 1 4.3311 -8.4450 -0.5370 17 6 3.9225 -8.9657 1.5702 18 6 4.0918 -10.4050 1.0645 19 7 3.0887 -10.1067 0.0312 20 6 2.1898 -10.8140 -0.6816 21 8 1.4184 -10.2424 -1.4225 22 6 2.1432 -12.3152 -0.5578 23 6 1.0584 -12.8595 -1.4511 24 7 -0.2110 -13.0554 -1.0965 25 6 -0.8859 -13.5346 -2.1097 26 7 -0.0425 -13.6649 -3.1484 27 1 -0.2574 -13.9994 -4.0332 28 7 1.2114 -13.2212 -2.6978 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7321 0.8871 31 1 3.1245 -3.7305 -0.8929 32 1 3.8010 -6.1835 -0.0051 33 1 1.7952 -7.9025 -0.9358 34 1 1.6521 -7.8491 0.8376 35 1 3.1231 -8.8397 2.3005 36 1 4.8547 -8.4813 1.8607 37 1 3.7656 -11.1583 1.7816 38 1 5.0835 -10.6093 0.6606 39 1 3.1041 -12.7344 -0.8558 40 1 1.9328 -12.5882 0.4764 41 1 -1.9361 -13.7864 -2.1099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584585427.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:37 Heat of formation + Delta-G solvation = 23.408484 kcal Electronic energy + Delta-G solvation = -25461.067796 eV Core-core repulsion = 21504.385606 eV Total energy + Delta-G solvation = -3956.682190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.11684 -41.63703 -40.47440 -38.99866 -35.77971 -34.58415 -34.36677 -32.81384 -31.88402 -31.17426 -29.33739 -28.73505 -27.62738 -24.16869 -23.93415 -23.38048 -21.97770 -21.46980 -20.07778 -19.66312 -19.27761 -18.30647 -17.82244 -17.67632 -16.88706 -16.86590 -16.68430 -16.49761 -16.16746 -16.02851 -15.62236 -15.23590 -14.91963 -14.65095 -14.54944 -14.43942 -13.93395 -13.64015 -13.48681 -13.21463 -13.16166 -13.07922 -12.91969 -12.84211 -12.59382 -12.41820 -11.75811 -11.63555 -11.27316 -11.15940 -11.13224 -11.05327 -10.96736 -10.63376 -10.26870 -10.17814 -9.78737 -8.68183 -8.34510 -6.13420 0.58750 1.23724 1.41590 1.42213 1.50186 1.55161 1.57282 1.61343 1.80720 1.98816 2.27121 2.38125 2.99668 3.12213 3.32042 3.32382 3.57611 3.63524 3.74023 3.96606 4.02377 4.05155 4.10304 4.30498 4.37761 4.48719 4.49827 4.53191 4.57781 4.69635 4.76231 4.96676 5.05617 5.18612 5.28778 5.31388 5.39419 5.42394 6.20406 6.21476 6.47102 6.67212 7.04831 7.05506 7.06461 7.22381 8.75156 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.001879 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.705726 B =14901.817088 C =15933.985760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.009 3.991 3 Si 1.003 2.997 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.572 6.572 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.119 3.881 16 H 0.125 0.875 17 C -0.139 4.139 18 C 0.105 3.895 19 N -0.648 5.648 20 C 0.540 3.460 21 O -0.585 6.585 22 C -0.034 4.034 23 C 0.228 3.772 24 N -0.577 5.577 25 C 0.273 3.727 26 N -0.475 5.475 27 H 0.458 0.542 28 N -0.339 5.339 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.421 0.579 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 -32.179 1.297 34.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.066 5.934 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.359 5.359 14 C -0.002 4.002 15 C 0.016 3.984 16 H 0.143 0.857 17 C -0.176 4.176 18 C -0.015 4.015 19 N -0.384 5.384 20 C 0.329 3.671 21 O -0.465 6.465 22 C -0.075 4.075 23 C -0.055 4.055 24 N -0.306 5.306 25 C -0.025 4.025 26 N -0.195 5.195 27 H 0.306 0.694 28 N -0.170 5.170 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.259 0.741 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 11.383 -32.197 0.755 34.158 hybrid contribution 0.836 1.167 -1.055 1.781 sum 12.220 -31.030 -0.300 33.350 Atomic orbital electron populations 1.70208 1.08100 1.28543 1.48138 1.26200 0.95998 1.03525 0.93768 0.84853 0.78681 0.76065 0.77998 1.17719 1.20126 1.19883 1.23242 0.95427 0.91692 1.58679 0.89551 1.85723 1.10953 0.99624 1.97073 1.23339 1.03419 0.93533 1.07246 1.20232 0.86161 0.86957 0.74975 1.90714 1.17944 1.86191 1.50136 1.45473 1.10472 1.04295 1.75666 1.21370 0.97147 0.80842 1.00850 1.23179 0.94630 0.80744 0.99885 0.85710 1.23607 1.04383 0.96730 0.92903 1.23361 0.92349 0.98332 0.87455 1.49824 1.36888 1.09934 1.41757 1.20392 0.79153 0.89518 0.77987 1.90770 1.42153 1.72854 1.40679 1.19900 0.97048 0.89611 1.00956 1.23776 0.93251 0.97628 0.90865 1.70356 1.04671 1.23232 1.32363 1.26990 1.00256 0.93307 0.81917 1.48024 1.05949 1.49900 1.15603 0.69357 1.77829 1.03527 1.22372 1.13238 0.92038 0.86331 0.86990 0.74051 0.94577 0.92986 0.89415 0.85297 0.87584 0.86005 0.83667 0.83791 0.71430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.25 13.22 21.65 0.29 -56.96 16 2 C 0.01 0.55 5.49 84.86 0.47 1.01 16 3 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.36 9.50 67.96 0.65 -30.71 16 8 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 9 S -0.16 -9.22 20.57 -56.49 -1.16 -10.38 16 10 C -0.12 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.53 21.03 7.85 87.66 0.69 21.72 16 12 O -0.57 -29.37 15.86 -3.05 -0.05 -29.42 16 13 N -0.70 -18.97 5.55 -463.05 -2.57 -21.54 16 14 C 0.12 3.43 5.39 86.38 0.47 3.90 16 15 C 0.12 1.85 4.08 41.83 0.17 2.02 16 16 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 17 C -0.14 -1.00 8.03 30.97 0.25 -0.76 16 18 C 0.11 0.47 8.41 83.18 0.70 1.17 16 19 N -0.65 -10.51 3.57 -833.04 -2.97 -13.48 16 20 C 0.54 12.82 7.99 87.66 0.70 13.52 16 21 O -0.58 -21.29 15.41 -3.02 -0.05 -21.33 16 22 C -0.03 -0.54 6.16 29.10 0.18 -0.36 16 23 C 0.23 5.27 6.63 138.63 0.92 6.19 16 24 N -0.58 -13.26 11.19 -191.80 -2.15 -15.40 16 25 C 0.27 3.91 13.13 180.36 2.37 6.28 16 26 N -0.48 -7.01 7.45 -60.49 -0.45 -7.46 16 27 H 0.46 3.02 8.96 -213.09 -1.91 1.11 16 28 N -0.34 -7.80 12.80 -51.33 -0.66 -8.45 16 29 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.12 4.14 8.14 -2.40 -0.02 4.12 16 31 H 0.11 4.04 8.14 -2.39 -0.02 4.03 16 32 H 0.42 7.21 8.48 -92.71 -0.79 6.42 16 33 H 0.04 1.35 7.05 -2.39 -0.02 1.34 16 34 H 0.05 1.67 7.90 -2.39 -0.02 1.65 16 35 H 0.09 0.94 7.96 -2.38 -0.02 0.92 16 36 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.12 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.27 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -105.24 374.97 -1.35 -106.60 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -1.60 Total: 12.40 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.99 Total: 19.38 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -8.51 Total: -123.30 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.16 Total: -10.38 kcal Total: -105.24 -1.35 -106.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584585427.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.004 kcal (2) G-P(sol) polarization free energy of solvation -105.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds