Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48504 * 109.47074 * 270.00235 * 3 2 1 5 5 H 1.48497 * 109.47265 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47109 * 150.00539 * 3 2 1 7 7 C 1.38801 * 119.99555 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99487 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00465 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00321 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00188 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99966 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00111 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47430 * 184.98267 * 14 13 11 16 16 H 1.08999 * 112.74047 * 45.12982 * 15 14 13 17 17 C 1.53496 * 113.46668 * 274.38888 * 15 14 13 18 18 C 1.53681 * 83.28368 * 219.12342 * 17 15 14 19 19 N 1.47064 * 87.97864 * 26.06534 * 18 17 15 20 20 C 1.34779 * 136.05617 * 152.84270 * 19 18 17 21 21 O 1.21278 * 119.99861 * 185.03828 * 20 19 18 22 22 C 1.50698 * 120.00095 * 5.04496 * 20 19 18 23 23 C 1.50696 * 109.47329 * 179.97438 * 22 20 19 24 24 N 1.33236 * 125.52809 * 269.69339 * 23 22 20 25 25 C 1.30830 * 109.83162 * 179.85356 * 24 23 22 26 26 N 1.34425 * 108.07746 * 0.40322 * 25 24 23 27 27 H 0.97000 * 126.83006 * 179.72046 * 26 25 24 28 28 N 1.30720 * 125.52763 * 89.99773 * 23 22 20 29 29 H 0.96998 * 119.99497 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47081 * 59.99605 * 10 9 7 31 31 H 1.09003 * 109.47063 * 300.00055 * 10 9 7 32 32 H 0.96997 * 120.00225 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47706 * 64.98055 * 14 13 11 34 34 H 1.09008 * 109.47420 * 304.98366 * 14 13 11 35 35 H 1.08998 * 114.20774 * 332.68008 * 17 15 14 36 36 H 1.09002 * 114.20824 * 105.50553 * 17 15 14 37 37 H 1.09002 * 113.46981 * 271.28944 * 18 17 15 38 38 H 1.09003 * 113.53097 * 140.85430 * 18 17 15 39 39 H 1.09001 * 109.46960 * 299.99652 * 22 20 19 40 40 H 1.09000 * 109.47606 * 59.99272 * 22 20 19 41 41 H 1.08003 * 125.96360 * 180.12659 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0010 13 7 2.8440 -6.3432 0.0007 14 6 2.3303 -7.7151 0.0008 15 6 3.4971 -8.6967 0.1268 16 1 4.2152 -8.4016 0.8919 17 6 4.1473 -9.0493 -1.2182 18 6 4.2277 -10.4563 -0.6053 19 7 3.0726 -10.1008 0.2325 20 6 2.0669 -10.7680 0.8325 21 8 1.1884 -10.1562 1.4024 22 6 2.0340 -12.2741 0.7951 23 6 0.8171 -12.7685 1.5337 24 7 0.7661 -13.0633 2.8321 25 6 -0.4392 -13.4603 3.1501 26 7 -1.1939 -13.4346 2.0380 27 1 -2.1295 -13.6797 1.9644 28 7 -0.3583 -12.9831 1.0034 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1244 -3.7315 -0.8905 32 1 3.8008 -6.1836 0.0012 33 1 1.7963 -7.9032 -0.9306 34 1 1.6506 -7.8486 0.8425 35 1 3.4756 -8.9721 -2.0732 36 1 5.1155 -8.5770 -1.3841 37 1 5.1404 -10.6299 -0.0352 38 1 4.0180 -11.2541 -1.3179 39 1 1.9925 -12.6110 -0.2407 40 1 2.9321 -12.6691 1.2699 41 1 -0.7692 -13.7609 4.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584585428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = 59.203146 kcal Electronic energy + Delta-G solvation = -25469.662921 eV Core-core repulsion = 21514.532904 eV Total energy + Delta-G solvation = -3955.130017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45338 -40.89073 -38.97362 -38.11564 -34.40255 -33.65969 -32.39676 -32.09283 -30.89561 -29.92395 -28.71882 -27.58333 -25.44692 -23.36630 -23.31568 -22.72455 -20.86121 -20.39636 -19.15483 -18.64090 -17.88858 -17.48318 -16.67717 -16.43980 -15.91170 -15.72474 -15.37129 -15.13514 -15.02089 -14.77606 -14.46991 -13.98033 -13.90119 -13.73716 -13.25835 -13.02540 -12.92763 -12.54298 -12.51042 -12.43343 -12.33158 -11.91476 -11.67249 -11.03908 -10.99766 -10.95256 -10.72638 -10.53075 -10.40751 -10.19749 -9.87529 -9.78485 -9.35342 -9.08859 -9.03930 -8.81534 -8.18831 -6.46163 -6.18342 -3.88682 1.25062 2.11587 2.34855 2.36508 2.67217 3.12643 3.17348 3.24464 3.30628 3.36337 3.67236 3.81310 3.87906 4.12089 4.23296 4.23418 4.47572 4.57112 4.60527 4.78013 4.89709 4.93011 4.98768 5.08334 5.16535 5.22635 5.32116 5.35429 5.61652 5.69118 5.81700 5.83093 5.94610 5.99837 6.11070 6.17427 6.63807 6.66632 7.35764 7.62472 7.70632 7.74801 7.86648 8.38308 8.68541 9.26645 10.89091 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.001901 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.330718 B =14722.942090 C =15845.076391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.126 3.874 16 H 0.101 0.899 17 C -0.152 4.152 18 C 0.099 3.901 19 N -0.645 5.645 20 C 0.548 3.452 21 O -0.515 6.515 22 C -0.039 4.039 23 C 0.244 3.756 24 N -0.536 5.536 25 C 0.265 3.735 26 N -0.481 5.481 27 H 0.443 0.557 28 N -0.301 5.301 29 H 0.268 0.732 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -31.226 0.780 32.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.022 3.978 16 H 0.119 0.881 17 C -0.190 4.190 18 C -0.024 4.024 19 N -0.383 5.383 20 C 0.336 3.664 21 O -0.389 6.389 22 C -0.082 4.082 23 C -0.039 4.039 24 N -0.264 5.264 25 C -0.034 4.034 26 N -0.199 5.199 27 H 0.289 0.711 28 N -0.130 5.130 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.251 -31.127 0.694 31.968 hybrid contribution 1.686 1.042 0.337 2.011 sum 8.937 -30.085 1.031 31.401 Atomic orbital electron populations 1.70027 1.05955 1.27412 1.46886 1.25005 0.95036 0.99042 0.94606 0.86160 0.79393 0.81576 0.78306 1.20293 1.20783 1.19702 1.22869 0.94905 0.91669 1.58864 0.90914 1.85457 1.04975 0.96295 1.96701 1.23516 1.06522 0.95275 1.04915 1.20307 0.86532 0.86199 0.75273 1.90727 1.15403 1.85504 1.47092 1.45835 1.09831 1.05212 1.78325 1.21437 0.95486 0.80272 1.03700 1.22889 0.95277 0.82517 0.97122 0.88117 1.23632 1.02533 0.95877 0.96914 1.23052 0.88577 0.98553 0.92198 1.49609 1.26261 1.09300 1.53094 1.19787 0.80549 0.88649 0.77409 1.90812 1.36219 1.69404 1.42439 1.19765 0.94273 0.92438 1.01685 1.23245 0.93439 0.97848 0.89366 1.70340 1.20863 1.21281 1.13882 1.26079 0.86863 0.96126 0.94371 1.48075 1.13874 1.51417 1.06574 0.71140 1.77987 1.02265 1.21279 1.11505 0.92209 0.89205 0.89170 0.76954 0.91376 0.89759 0.88125 0.88614 0.89244 0.89880 0.86519 0.86007 0.75973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 10.48 7.85 -10.99 -0.09 10.40 16 12 O -0.51 -12.64 15.86 5.55 0.09 -12.56 16 13 N -0.74 -10.29 5.55 -60.30 -0.33 -10.62 16 14 C 0.12 1.58 5.39 -4.04 -0.02 1.56 16 15 C 0.13 1.10 4.08 -72.39 -0.30 0.80 16 16 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 17 C -0.15 -0.79 8.03 -26.12 -0.21 -1.00 16 18 C 0.10 0.42 8.42 -8.41 -0.07 0.35 16 19 N -0.64 -5.76 3.57 -177.20 -0.63 -6.39 16 20 C 0.55 6.51 8.00 -10.99 -0.09 6.42 16 21 O -0.51 -8.87 15.41 5.56 0.09 -8.78 16 22 C -0.04 -0.34 6.16 -29.04 -0.18 -0.52 16 23 C 0.24 2.81 6.63 -156.85 -1.04 1.77 16 24 N -0.54 -5.98 11.19 -11.98 -0.13 -6.11 16 25 C 0.26 1.95 13.13 -90.66 -1.19 0.76 16 26 N -0.48 -3.72 7.45 29.53 0.22 -3.50 16 27 H 0.44 1.71 8.96 -182.34 -1.63 0.08 16 28 N -0.30 -3.52 12.80 32.42 0.41 -3.11 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 32 H 0.40 3.97 8.48 -40.82 -0.35 3.62 16 33 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 34 H 0.08 1.50 7.04 -51.92 -0.37 1.14 16 35 H 0.10 0.61 7.95 -51.93 -0.41 0.20 16 36 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.22 0.45 8.06 -52.48 -0.42 0.03 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -44.21 374.95 -10.42 -54.63 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.52 Total: -0.51 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -2.76 Total: 4.47 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.27 Total: -55.62 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.17 Total: -21.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -44.21 -10.42 -54.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584585428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.835 kcal (2) G-P(sol) polarization free energy of solvation -44.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds