Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00514 * 2 1 4 4 H 1.48500 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46965 * 299.99766 * 3 2 1 6 6 H 1.48494 * 109.47477 * 60.00048 * 3 2 1 7 7 C 1.38810 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00079 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99533 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99860 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00054 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47021 * 184.96068 * 14 13 11 16 16 H 1.09001 * 112.77791 * 45.04777 * 15 14 13 17 17 C 1.53231 * 113.38388 * 274.33676 * 15 14 13 18 18 C 1.53499 * 83.42863 * 219.29210 * 17 15 14 19 19 N 1.47062 * 87.98688 * 25.90115 * 18 17 15 20 20 C 1.34775 * 136.06213 * 152.84652 * 19 18 17 21 21 O 1.21283 * 120.00020 * 174.96385 * 20 19 18 22 22 C 1.50694 * 119.99692 * 355.23451 * 20 19 18 23 23 N 1.46505 * 109.46863 * 179.72350 * 22 20 19 24 24 C 1.34434 * 126.81947 * 124.71193 * 23 22 20 25 25 N 1.30830 * 108.07594 * 179.89000 * 24 23 22 26 26 C 1.33245 * 109.82966 * 0.38239 * 25 24 23 27 27 N 1.30713 * 108.94591 * 359.76114 * 26 25 24 28 28 H 0.97003 * 119.99194 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 59.99803 * 10 9 7 30 30 H 1.08997 * 109.46991 * 299.99453 * 10 9 7 31 31 H 0.96996 * 119.99734 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46790 * 64.96218 * 14 13 11 33 33 H 1.08998 * 109.47277 * 304.96198 * 14 13 11 34 34 H 1.09003 * 114.33044 * 105.66185 * 17 15 14 35 35 H 1.09007 * 114.19837 * 332.91220 * 17 15 14 36 36 H 1.09002 * 113.46879 * 271.11458 * 18 17 15 37 37 H 1.09004 * 113.52023 * 140.68405 * 18 17 15 38 38 H 1.08996 * 109.47778 * 299.72508 * 22 20 19 39 39 H 1.09003 * 109.47220 * 59.73250 * 22 20 19 40 40 H 1.08001 * 125.96125 * 0.03773 * 24 23 22 41 41 H 1.07994 * 125.52778 * 179.71863 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8918 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9870 -5.3028 0.0017 12 8 0.7907 -5.5023 0.0009 13 7 2.8437 -6.3433 0.0033 14 6 2.3298 -7.7152 0.0034 15 6 3.4966 -8.6968 0.1300 16 1 4.2156 -8.4014 0.8941 17 6 4.1438 -9.0488 -1.2136 18 6 4.2228 -10.4564 -0.6065 19 7 3.0719 -10.1008 0.2371 20 6 2.0668 -10.7674 0.8387 21 8 1.2963 -10.1761 1.5651 22 6 1.9041 -12.2485 0.6137 23 7 0.7520 -12.7347 1.3770 24 6 -0.3083 -13.4061 0.8953 25 7 -1.1147 -13.6616 1.8934 26 6 -0.6094 -13.1640 3.0214 27 7 0.5331 -12.5868 2.7564 28 1 -0.4849 0.8401 -0.0004 29 1 3.1236 -3.7311 0.8925 30 1 3.1248 -3.7319 -0.8875 31 1 3.8004 -6.1837 0.0043 32 1 1.7961 -7.9034 -0.9282 33 1 1.6500 -7.8485 0.8449 34 1 5.1132 -8.5796 -1.3817 35 1 3.4718 -8.9677 -2.0681 36 1 5.1373 -10.6344 -0.0407 37 1 4.0080 -11.2510 -1.3211 38 1 1.7437 -12.4394 -0.4474 39 1 2.8040 -12.7672 0.9443 40 1 -0.4658 -13.6878 -0.1354 41 1 -1.0695 -13.2267 3.9964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584587370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = 74.356672 kcal Electronic energy + Delta-G solvation = -25568.668285 eV Core-core repulsion = 21614.195374 eV Total energy + Delta-G solvation = -3954.472911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38277 -41.08339 -39.08371 -38.32531 -34.58438 -34.31697 -32.42807 -31.51414 -31.00469 -30.00804 -28.23169 -27.60144 -25.48182 -23.50658 -23.29432 -22.30254 -21.92649 -20.55465 -19.36808 -18.02212 -17.79105 -17.76718 -16.82621 -16.46806 -16.01907 -15.81093 -15.34678 -15.23149 -14.96855 -14.80735 -14.74021 -14.34095 -13.98699 -13.90764 -13.43857 -13.35730 -13.09707 -12.94254 -12.56309 -12.50312 -12.21014 -12.05895 -11.76856 -11.11844 -11.07024 -11.01957 -10.75537 -10.60397 -10.33027 -10.07551 -9.87867 -9.80901 -9.43694 -9.28959 -9.07940 -8.92463 -8.22542 -6.49919 -6.21561 -3.92176 1.23834 1.72325 2.04325 2.24465 2.71001 3.05812 3.09493 3.21472 3.28419 3.33058 3.58215 3.72065 3.79048 3.98000 3.99606 4.20117 4.32562 4.38696 4.42380 4.53994 4.63099 4.72915 4.77862 4.88402 5.08775 5.13552 5.15707 5.21533 5.46170 5.62583 5.67718 5.86502 5.88377 5.95043 6.12198 6.12437 6.36926 6.53503 7.12314 7.59544 7.60107 7.66204 7.76904 8.35402 8.60099 9.23633 10.85923 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.001913 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.304642 B =14630.541617 C =15726.688105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.513 6.513 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.128 3.872 16 H 0.102 0.898 17 C -0.151 4.151 18 C 0.098 3.902 19 N -0.645 5.645 20 C 0.526 3.474 21 O -0.495 6.495 22 C 0.121 3.879 23 N -0.374 5.374 24 C 0.257 3.743 25 N -0.543 5.543 26 C 0.196 3.804 27 N -0.291 5.291 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.220 0.780 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.960 -29.713 -3.821 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.024 3.976 16 H 0.120 0.880 17 C -0.189 4.189 18 C -0.025 4.025 19 N -0.384 5.384 20 C 0.312 3.688 21 O -0.367 6.367 22 C -0.005 4.005 23 N -0.166 5.166 24 C -0.040 4.040 25 N -0.269 5.269 26 C -0.107 4.107 27 N -0.117 5.117 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.236 0.764 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.341 -29.569 -2.801 31.450 hybrid contribution 2.561 1.323 -0.215 2.891 sum 12.902 -28.246 -3.017 31.199 Atomic orbital electron populations 1.70034 1.05962 1.27351 1.46872 1.25011 0.95041 0.99073 0.94571 0.86103 0.79542 0.81858 0.77898 1.19625 1.20577 1.20565 1.22904 0.94928 0.91616 1.58879 0.90851 1.85468 1.04894 0.96350 1.96705 1.23519 1.06592 0.95189 1.04942 1.20330 0.86510 0.86214 0.75185 1.90728 1.15399 1.85495 1.47036 1.45818 1.09888 1.05066 1.78445 1.21404 0.95461 0.80548 1.03510 1.22844 0.95358 0.82227 0.97141 0.88047 1.23553 1.02752 0.95721 0.96869 1.23055 0.88620 0.98692 0.92100 1.49646 1.26268 1.09673 1.52820 1.20026 0.80697 0.88414 0.79643 1.90887 1.42967 1.68411 1.34408 1.21427 0.88935 0.93020 0.97132 1.50009 1.17756 1.42385 1.06454 1.26102 0.83857 0.93279 1.00792 1.70543 1.30475 1.27292 0.98609 1.26060 0.91021 0.94721 0.98910 1.78207 1.20145 1.22749 0.90576 0.92223 0.89171 0.89152 0.76886 0.91391 0.89905 0.88435 0.88022 0.89103 0.89871 0.85156 0.86449 0.76393 0.76588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 10.13 7.85 -10.98 -0.09 10.05 16 12 O -0.51 -12.27 15.86 5.56 0.09 -12.18 16 13 N -0.74 -9.66 5.55 -60.29 -0.33 -10.00 16 14 C 0.12 1.44 5.47 -4.04 -0.02 1.41 16 15 C 0.13 0.95 4.06 -72.54 -0.29 0.66 16 16 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.15 -0.55 8.00 -26.35 -0.21 -0.76 16 18 C 0.10 0.23 8.42 -8.52 -0.07 0.16 16 19 N -0.65 -4.56 3.57 -177.63 -0.63 -5.19 16 20 C 0.53 5.15 7.99 -10.99 -0.09 5.07 16 21 O -0.49 -7.83 15.35 5.55 0.09 -7.75 16 22 C 0.12 0.66 6.86 -5.19 -0.04 0.62 16 23 N -0.37 -3.44 3.41 -63.81 -0.22 -3.65 16 24 C 0.26 2.03 12.63 -90.65 -1.14 0.89 16 25 N -0.54 -5.87 11.19 -15.83 -0.18 -6.05 16 26 C 0.20 2.14 13.03 -91.81 -1.20 0.94 16 27 N -0.29 -3.62 11.82 29.29 0.35 -3.27 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.67 8.48 -40.82 -0.35 3.33 16 32 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 33 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.10 0.43 7.94 -51.93 -0.41 0.02 16 36 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.13 0.14 8.09 -51.93 -0.42 -0.28 16 39 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -44.01 375.62 -9.72 -53.74 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.31 Total: -1.38 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.73 Total: 3.17 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.28 Total: -53.83 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -44.01 -9.72 -53.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584587370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.092 kcal (2) G-P(sol) polarization free energy of solvation -44.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds