Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00514 * 2 1 4 4 H 1.48500 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46965 * 299.99766 * 3 2 1 6 6 H 1.48494 * 109.47477 * 60.00048 * 3 2 1 7 7 C 1.38810 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00079 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99533 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99860 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00054 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47021 * 184.96068 * 14 13 11 16 16 H 1.09001 * 112.77791 * 45.04777 * 15 14 13 17 17 C 1.53231 * 113.38388 * 274.33676 * 15 14 13 18 18 C 1.53499 * 83.42863 * 219.29210 * 17 15 14 19 19 N 1.47062 * 87.98688 * 25.90115 * 18 17 15 20 20 C 1.34775 * 136.06213 * 152.84652 * 19 18 17 21 21 O 1.21283 * 120.00020 * 174.96385 * 20 19 18 22 22 C 1.50694 * 119.99692 * 355.23451 * 20 19 18 23 23 N 1.46505 * 109.46863 * 179.72350 * 22 20 19 24 24 C 1.34434 * 126.81947 * 124.71193 * 23 22 20 25 25 N 1.30830 * 108.07594 * 179.89000 * 24 23 22 26 26 C 1.33245 * 109.82966 * 0.38239 * 25 24 23 27 27 N 1.30713 * 108.94591 * 359.76114 * 26 25 24 28 28 H 0.97003 * 119.99194 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 59.99803 * 10 9 7 30 30 H 1.08997 * 109.46991 * 299.99453 * 10 9 7 31 31 H 0.96996 * 119.99734 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46790 * 64.96218 * 14 13 11 33 33 H 1.08998 * 109.47277 * 304.96198 * 14 13 11 34 34 H 1.09003 * 114.33044 * 105.66185 * 17 15 14 35 35 H 1.09007 * 114.19837 * 332.91220 * 17 15 14 36 36 H 1.09002 * 113.46879 * 271.11458 * 18 17 15 37 37 H 1.09004 * 113.52023 * 140.68405 * 18 17 15 38 38 H 1.08996 * 109.47778 * 299.72508 * 22 20 19 39 39 H 1.09003 * 109.47220 * 59.73250 * 22 20 19 40 40 H 1.08001 * 125.96125 * 0.03773 * 24 23 22 41 41 H 1.07994 * 125.52778 * 179.71863 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8918 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9870 -5.3028 0.0017 12 8 0.7907 -5.5023 0.0009 13 7 2.8437 -6.3433 0.0033 14 6 2.3298 -7.7152 0.0034 15 6 3.4966 -8.6968 0.1300 16 1 4.2156 -8.4014 0.8941 17 6 4.1438 -9.0488 -1.2136 18 6 4.2228 -10.4564 -0.6065 19 7 3.0719 -10.1008 0.2371 20 6 2.0668 -10.7674 0.8387 21 8 1.2963 -10.1761 1.5651 22 6 1.9041 -12.2485 0.6137 23 7 0.7520 -12.7347 1.3770 24 6 -0.3083 -13.4061 0.8953 25 7 -1.1147 -13.6616 1.8934 26 6 -0.6094 -13.1640 3.0214 27 7 0.5331 -12.5868 2.7564 28 1 -0.4849 0.8401 -0.0004 29 1 3.1236 -3.7311 0.8925 30 1 3.1248 -3.7319 -0.8875 31 1 3.8004 -6.1837 0.0043 32 1 1.7961 -7.9034 -0.9282 33 1 1.6500 -7.8485 0.8449 34 1 5.1132 -8.5796 -1.3817 35 1 3.4718 -8.9677 -2.0681 36 1 5.1373 -10.6344 -0.0407 37 1 4.0080 -11.2510 -1.3211 38 1 1.7437 -12.4394 -0.4474 39 1 2.8040 -12.7672 0.9443 40 1 -0.4658 -13.6878 -0.1354 41 1 -1.0695 -13.2267 3.9964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584587370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = 40.066449 kcal Electronic energy + Delta-G solvation = -25570.155220 eV Core-core repulsion = 21614.195374 eV Total energy + Delta-G solvation = -3955.959846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.04012 -41.69021 -40.51553 -39.08071 -35.82233 -35.02526 -34.59935 -32.22963 -31.93413 -31.13189 -28.91460 -28.47557 -27.64063 -24.21070 -23.84876 -22.95082 -22.50528 -21.97436 -20.15393 -19.72929 -18.50259 -18.34855 -17.91397 -17.70470 -16.89779 -16.79241 -16.76152 -16.52123 -16.16518 -15.86015 -15.54801 -15.35183 -15.02426 -14.88344 -14.70684 -14.48400 -13.98411 -13.83847 -13.61371 -13.47639 -13.17802 -12.98714 -12.91348 -12.82019 -12.61172 -12.43201 -11.76915 -11.63308 -11.31965 -11.17369 -11.07103 -11.05082 -10.81462 -10.54693 -10.28844 -10.23547 -9.85244 -8.70138 -8.36056 -6.15150 0.61288 1.18541 1.26815 1.41196 1.41987 1.45087 1.53928 1.56151 1.72976 2.00020 2.25591 2.31954 2.98287 3.15624 3.30129 3.41506 3.50292 3.60872 3.71504 3.93711 3.96110 4.00744 4.05098 4.07624 4.27938 4.32373 4.47250 4.47764 4.50808 4.65976 4.72203 4.89395 5.04686 5.20944 5.25899 5.34849 5.40899 5.42580 5.85138 6.18867 6.43294 6.60603 6.97166 7.04987 7.09009 7.18837 8.73607 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.001913 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.304642 B =14630.541617 C =15726.688105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.009 3.991 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.087 0.913 9 S -0.162 6.162 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.572 6.572 13 N -0.704 5.704 14 C 0.122 3.878 15 C 0.118 3.882 16 H 0.114 0.886 17 C -0.136 4.136 18 C 0.106 3.894 19 N -0.646 5.646 20 C 0.513 3.487 21 O -0.574 6.574 22 C 0.122 3.878 23 N -0.380 5.380 24 C 0.264 3.736 25 N -0.578 5.578 26 C 0.184 3.816 27 N -0.339 5.339 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.422 0.578 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.183 0.817 39 H 0.147 0.853 40 H 0.270 0.730 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.294 -31.045 -5.967 36.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.690 4.690 8 H 0.105 0.895 9 S 0.065 5.935 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.360 5.360 14 C -0.003 4.003 15 C 0.014 3.986 16 H 0.132 0.868 17 C -0.174 4.174 18 C -0.014 4.014 19 N -0.383 5.383 20 C 0.302 3.698 21 O -0.452 6.452 22 C -0.002 4.002 23 N -0.171 5.171 24 C -0.031 4.031 25 N -0.305 5.305 26 C -0.119 4.119 27 N -0.166 5.166 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.200 0.800 39 H 0.164 0.836 40 H 0.285 0.715 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 14.811 -30.949 -4.996 34.672 hybrid contribution 1.290 1.647 0.397 2.129 sum 16.101 -29.302 -4.599 33.749 Atomic orbital electron populations 1.70210 1.08115 1.28556 1.48102 1.26206 0.96001 1.03550 0.93753 0.84850 0.78685 0.76046 0.78006 1.17687 1.19879 1.20136 1.23236 0.95417 0.91660 1.58725 0.89530 1.85731 1.10967 0.99686 1.97079 1.23340 1.03424 0.93562 1.07242 1.20231 0.86155 0.86988 0.74937 1.90716 1.17969 1.86188 1.50109 1.45454 1.10470 1.04309 1.75724 1.21380 0.97153 0.80941 1.00819 1.23077 0.93481 0.81456 1.00563 0.86793 1.23554 1.03326 0.96503 0.94017 1.23382 0.87392 0.98939 0.91719 1.49885 1.26749 1.09563 1.52153 1.20900 0.80212 0.90092 0.78551 1.90862 1.45967 1.70290 1.38034 1.21886 0.89058 0.89770 0.99525 1.50194 1.18994 1.42360 1.05545 1.27060 0.82535 0.91457 1.02074 1.70523 1.31968 1.28755 0.99292 1.26460 0.91012 0.94471 0.99943 1.78094 1.21217 1.24071 0.93190 0.92030 0.87019 0.86306 0.74029 0.92347 0.94985 0.85563 0.88514 0.86737 0.86384 0.80018 0.83563 0.71492 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.05 13.22 21.65 0.29 -56.77 16 2 C 0.01 0.53 5.49 84.86 0.47 1.00 16 3 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.16 9.50 67.96 0.65 -30.51 16 8 H 0.09 4.56 7.80 -2.92 -0.02 4.54 16 9 S -0.16 -9.20 20.57 -56.49 -1.16 -10.36 16 10 C -0.12 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.53 20.49 7.85 87.66 0.69 21.18 16 12 O -0.57 -28.84 15.86 -3.03 -0.05 -28.89 16 13 N -0.70 -17.88 5.55 -463.05 -2.57 -20.45 16 14 C 0.12 3.08 5.47 86.38 0.47 3.55 16 15 C 0.12 1.51 4.06 41.70 0.17 1.68 16 16 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 17 C -0.14 -0.39 8.00 30.84 0.25 -0.14 16 18 C 0.11 -0.05 8.42 83.17 0.70 0.65 16 19 N -0.65 -7.62 3.57 -834.28 -2.98 -10.60 16 20 C 0.51 9.69 7.99 87.66 0.70 10.39 16 21 O -0.57 -19.37 15.35 -3.04 -0.05 -19.42 16 22 C 0.12 0.99 6.86 85.63 0.59 1.58 16 23 N -0.38 -6.61 3.41 -355.80 -1.21 -7.82 16 24 C 0.26 3.80 12.63 180.36 2.28 6.08 16 25 N -0.58 -12.59 11.19 -204.00 -2.28 -14.87 16 26 C 0.18 4.27 13.03 180.76 2.36 6.62 16 27 N -0.34 -8.80 11.82 -61.25 -0.72 -9.52 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 30 H 0.12 4.05 8.14 -2.40 -0.02 4.03 16 31 H 0.42 6.62 8.48 -92.71 -0.79 5.83 16 32 H 0.06 1.58 7.88 -2.39 -0.02 1.56 16 33 H 0.03 1.16 7.15 -2.39 -0.02 1.15 16 34 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.10 0.45 7.94 -2.38 -0.02 0.43 16 36 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.12 -0.76 8.14 -2.38 -0.02 -0.78 16 38 H 0.18 -0.53 8.09 -2.39 -0.02 -0.55 16 39 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.27 0.50 8.06 -2.91 -0.02 0.47 16 41 H 0.23 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -107.88 375.62 1.32 -106.56 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.28 Total: 8.76 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 9.75 Total: 17.58 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -9.48 Total: -120.03 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.09 Total: -48.31 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.16 Total: -10.36 kcal Total: -107.88 1.32 -106.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584587370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.626 kcal (2) G-P(sol) polarization free energy of solvation -107.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds