Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00358 * 2 1 4 4 H 1.48502 * 109.47369 * 270.00510 * 3 2 1 5 5 H 1.48504 * 109.46883 * 30.00794 * 3 2 1 6 6 H 1.48496 * 109.47156 * 150.00118 * 3 2 1 7 7 C 1.38807 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99944 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47249 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99688 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00134 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99714 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46817 * 184.98513 * 14 13 11 16 16 H 1.09003 * 112.73479 * 314.84813 * 15 14 13 17 17 C 1.53493 * 113.52386 * 85.64071 * 15 14 13 18 18 C 1.53236 * 83.43023 * 140.68792 * 17 15 14 19 19 N 1.47064 * 113.46461 * 184.10418 * 15 14 13 20 20 C 1.34774 * 136.05925 * 38.00708 * 19 15 14 21 21 O 1.21280 * 120.00132 * 355.00870 * 20 19 15 22 22 C 1.50708 * 119.99913 * 175.01116 * 20 19 15 23 23 N 1.46503 * 109.46911 * 179.97438 * 22 20 19 24 24 C 1.34428 * 126.82241 * 125.00058 * 23 22 20 25 25 N 1.30835 * 108.07743 * 179.97438 * 24 23 22 26 26 C 1.33240 * 109.82514 * 0.02562 * 25 24 23 27 27 N 1.30707 * 108.95232 * 0.02562 * 26 25 24 28 28 H 0.97003 * 120.00071 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47057 * 59.99856 * 10 9 7 30 30 H 1.09008 * 109.46980 * 299.99826 * 10 9 7 31 31 H 0.96998 * 119.99781 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.47389 * 64.98264 * 14 13 11 33 33 H 1.08999 * 109.47239 * 304.97830 * 14 13 11 34 34 H 1.08997 * 114.20877 * 254.44902 * 17 15 14 35 35 H 1.09003 * 114.20556 * 27.07115 * 17 15 14 36 36 H 1.09000 * 113.38190 * 219.29398 * 18 17 15 37 37 H 1.08997 * 113.47102 * 88.92612 * 18 17 15 38 38 H 1.09000 * 109.47025 * 60.00107 * 22 20 19 39 39 H 1.09001 * 109.46900 * 299.99570 * 22 20 19 40 40 H 1.07999 * 125.95855 * 359.70305 * 24 23 22 41 41 H 1.08003 * 125.52039 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7281 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7907 -5.5023 -0.0011 13 7 2.8438 -6.3433 -0.0018 14 6 2.3299 -7.7152 -0.0019 15 6 3.4969 -8.6968 0.1227 16 1 4.3308 -8.4453 -0.5326 17 6 3.9193 -8.9654 1.5738 18 6 4.0868 -10.4040 1.0733 19 7 3.0880 -10.1068 0.0354 20 6 2.1894 -10.8142 -0.6776 21 8 1.4178 -10.2427 -1.4184 22 6 2.1434 -12.3156 -0.5543 23 7 1.0890 -12.8447 -1.4230 24 6 1.2261 -13.7811 -2.3778 25 7 0.0542 -13.9769 -2.9256 26 6 -0.8513 -13.1869 -2.3500 27 7 -0.2656 -12.4740 -1.4243 28 1 -0.4850 0.8401 0.0004 29 1 3.1242 -3.7315 0.8894 30 1 3.1242 -3.7315 -0.8906 31 1 3.8006 -6.1837 -0.0015 32 1 1.7951 -7.9028 -0.9329 33 1 1.6512 -7.8490 0.8405 34 1 4.8507 -8.4801 1.8653 35 1 3.1197 -8.8364 2.3032 36 1 3.7558 -11.1535 1.7922 37 1 5.0793 -10.6119 0.6736 38 1 1.9331 -12.5889 0.4797 39 1 3.1046 -12.7342 -0.8526 40 1 2.1443 -14.2810 -2.6486 41 1 -1.8995 -13.1429 -2.6069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584587373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = 74.752896 kcal Electronic energy + Delta-G solvation = -25560.736986 eV Core-core repulsion = 21606.281257 eV Total energy + Delta-G solvation = -3954.455729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.39094 -41.07770 -39.06456 -38.31680 -34.58002 -34.31042 -32.42140 -31.52011 -31.00481 -29.99718 -28.23324 -27.58182 -25.47317 -23.48478 -23.28559 -22.30667 -21.93324 -20.55674 -19.38870 -18.02365 -17.82791 -17.60401 -16.85221 -16.45671 -16.10959 -15.83000 -15.30206 -15.17470 -14.96323 -14.79820 -14.75453 -14.32032 -13.97805 -13.90247 -13.42667 -13.39615 -13.09954 -12.90803 -12.55336 -12.41795 -12.19340 -12.05750 -11.75022 -11.14768 -11.05739 -11.01859 -10.75661 -10.60837 -10.33334 -10.08271 -9.89069 -9.81266 -9.41966 -9.27186 -9.06421 -8.88567 -8.21991 -6.49082 -6.20652 -3.91353 1.23563 1.71382 2.06238 2.22309 2.70195 3.06649 3.11392 3.22695 3.28544 3.32777 3.58191 3.73352 3.81002 3.96171 3.97325 4.20917 4.31431 4.40161 4.44442 4.53044 4.63909 4.73114 4.78794 4.87179 5.09797 5.14263 5.17071 5.24610 5.50573 5.64359 5.71075 5.86256 5.89502 5.99623 6.12132 6.13073 6.36209 6.55757 7.12215 7.59573 7.60088 7.68003 7.76326 8.35808 8.62204 9.24289 10.86754 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.001888 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.112866 B =14826.472488 C =15881.930033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.128 3.872 16 H 0.102 0.898 17 C -0.151 4.151 18 C 0.097 3.903 19 N -0.645 5.645 20 C 0.526 3.474 21 O -0.495 6.495 22 C 0.121 3.879 23 N -0.374 5.374 24 C 0.254 3.746 25 N -0.543 5.543 26 C 0.195 3.805 27 N -0.287 5.287 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.219 0.781 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.539 -29.960 2.618 33.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.386 6.386 13 N -0.393 5.393 14 C -0.009 4.009 15 C 0.024 3.976 16 H 0.119 0.881 17 C -0.188 4.188 18 C -0.025 4.025 19 N -0.384 5.384 20 C 0.313 3.687 21 O -0.367 6.367 22 C -0.006 4.006 23 N -0.166 5.166 24 C -0.043 4.043 25 N -0.270 5.270 26 C -0.108 4.108 27 N -0.112 5.112 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.235 0.765 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.337 -29.703 2.294 31.876 hybrid contribution 2.819 1.258 -0.052 3.087 sum 14.156 -28.445 2.242 31.852 Atomic orbital electron populations 1.70021 1.05958 1.27457 1.46781 1.25005 0.95036 0.99050 0.94573 0.86159 0.79369 0.81566 0.78336 1.20282 1.20754 1.19715 1.22864 0.94889 0.91651 1.58992 0.90921 1.85469 1.04878 0.96301 1.96707 1.23518 1.06585 0.95237 1.04907 1.20319 0.86522 0.86194 0.75243 1.90733 1.15379 1.85491 1.47002 1.45839 1.09841 1.05150 1.78456 1.21426 0.95065 0.80332 1.04047 1.22912 0.96493 0.81687 0.96504 0.88057 1.23540 1.03752 0.95571 0.95965 1.23012 0.92261 0.98738 0.88525 1.49631 1.36991 1.10201 1.41539 1.20016 0.80385 0.88520 0.79821 1.90883 1.38198 1.70666 1.36917 1.21443 0.89994 0.92556 0.96586 1.50020 1.07292 1.30446 1.28858 1.26077 0.99337 0.91165 0.87733 1.70540 0.99302 1.27785 1.29332 1.26082 1.01031 0.91494 0.92184 1.78268 0.87450 1.21878 1.23649 0.92172 0.89164 0.89218 0.76956 0.90216 0.90873 0.88448 0.88027 0.89857 0.89094 0.86423 0.85221 0.76474 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 12 O -0.51 -12.34 15.86 5.55 0.09 -12.26 16 13 N -0.74 -9.79 5.55 -60.29 -0.33 -10.12 16 14 C 0.12 1.48 5.39 -4.04 -0.02 1.46 16 15 C 0.13 0.94 4.09 -72.40 -0.30 0.65 16 16 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.15 -0.63 8.01 -26.35 -0.21 -0.84 16 18 C 0.10 0.24 8.41 -8.65 -0.07 0.17 16 19 N -0.64 -4.52 3.57 -177.62 -0.63 -5.16 16 20 C 0.53 5.09 8.04 -10.98 -0.09 5.00 16 21 O -0.49 -7.73 15.12 5.56 0.08 -7.64 16 22 C 0.12 0.64 6.87 -5.19 -0.04 0.61 16 23 N -0.37 -3.39 3.41 -63.81 -0.22 -3.60 16 24 C 0.25 1.91 12.63 -90.65 -1.14 0.76 16 25 N -0.54 -5.72 11.19 -15.83 -0.18 -5.90 16 26 C 0.20 2.14 13.03 -91.82 -1.20 0.94 16 27 N -0.29 -3.63 11.81 29.29 0.35 -3.29 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.40 3.71 8.48 -40.82 -0.35 3.36 16 32 H 0.08 1.33 7.05 -51.93 -0.37 0.96 16 33 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 34 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.10 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 0.09 8.09 -51.93 -0.42 -0.33 16 40 H 0.22 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.22 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -43.98 375.30 -9.73 -53.70 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.30 Total: -1.23 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.73 Total: 2.94 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.28 Total: -53.77 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -43.98 -9.73 -53.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584587373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.457 kcal (2) G-P(sol) polarization free energy of solvation -43.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds