Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00358 * 2 1 4 4 H 1.48502 * 109.47369 * 270.00510 * 3 2 1 5 5 H 1.48504 * 109.46883 * 30.00794 * 3 2 1 6 6 H 1.48496 * 109.47156 * 150.00118 * 3 2 1 7 7 C 1.38807 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99944 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47249 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99688 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00134 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99714 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46817 * 184.98513 * 14 13 11 16 16 H 1.09003 * 112.73479 * 314.84813 * 15 14 13 17 17 C 1.53493 * 113.52386 * 85.64071 * 15 14 13 18 18 C 1.53236 * 83.43023 * 140.68792 * 17 15 14 19 19 N 1.47064 * 113.46461 * 184.10418 * 15 14 13 20 20 C 1.34774 * 136.05925 * 38.00708 * 19 15 14 21 21 O 1.21280 * 120.00132 * 355.00870 * 20 19 15 22 22 C 1.50708 * 119.99913 * 175.01116 * 20 19 15 23 23 N 1.46503 * 109.46911 * 179.97438 * 22 20 19 24 24 C 1.34428 * 126.82241 * 125.00058 * 23 22 20 25 25 N 1.30835 * 108.07743 * 179.97438 * 24 23 22 26 26 C 1.33240 * 109.82514 * 0.02562 * 25 24 23 27 27 N 1.30707 * 108.95232 * 0.02562 * 26 25 24 28 28 H 0.97003 * 120.00071 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47057 * 59.99856 * 10 9 7 30 30 H 1.09008 * 109.46980 * 299.99826 * 10 9 7 31 31 H 0.96998 * 119.99781 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.47389 * 64.98264 * 14 13 11 33 33 H 1.08999 * 109.47239 * 304.97830 * 14 13 11 34 34 H 1.08997 * 114.20877 * 254.44902 * 17 15 14 35 35 H 1.09003 * 114.20556 * 27.07115 * 17 15 14 36 36 H 1.09000 * 113.38190 * 219.29398 * 18 17 15 37 37 H 1.08997 * 113.47102 * 88.92612 * 18 17 15 38 38 H 1.09000 * 109.47025 * 60.00107 * 22 20 19 39 39 H 1.09001 * 109.46900 * 299.99570 * 22 20 19 40 40 H 1.07999 * 125.95855 * 359.70305 * 24 23 22 41 41 H 1.08003 * 125.52039 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7281 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7907 -5.5023 -0.0011 13 7 2.8438 -6.3433 -0.0018 14 6 2.3299 -7.7152 -0.0019 15 6 3.4969 -8.6968 0.1227 16 1 4.3308 -8.4453 -0.5326 17 6 3.9193 -8.9654 1.5738 18 6 4.0868 -10.4040 1.0733 19 7 3.0880 -10.1068 0.0354 20 6 2.1894 -10.8142 -0.6776 21 8 1.4178 -10.2427 -1.4184 22 6 2.1434 -12.3156 -0.5543 23 7 1.0890 -12.8447 -1.4230 24 6 1.2261 -13.7811 -2.3778 25 7 0.0542 -13.9769 -2.9256 26 6 -0.8513 -13.1869 -2.3500 27 7 -0.2656 -12.4740 -1.4243 28 1 -0.4850 0.8401 0.0004 29 1 3.1242 -3.7315 0.8894 30 1 3.1242 -3.7315 -0.8906 31 1 3.8006 -6.1837 -0.0015 32 1 1.7951 -7.9028 -0.9329 33 1 1.6512 -7.8490 0.8405 34 1 4.8507 -8.4801 1.8653 35 1 3.1197 -8.8364 2.3032 36 1 3.7558 -11.1535 1.7922 37 1 5.0793 -10.6119 0.6736 38 1 1.9331 -12.5889 0.4797 39 1 3.1046 -12.7342 -0.8526 40 1 2.1443 -14.2810 -2.6486 41 1 -1.8995 -13.1429 -2.6069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584587373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = 40.340591 kcal Electronic energy + Delta-G solvation = -25562.229216 eV Core-core repulsion = 21606.281257 eV Total energy + Delta-G solvation = -3955.947959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03668 -41.68990 -40.51281 -39.06952 -35.82860 -35.01993 -34.59648 -32.22839 -31.93423 -31.13883 -28.92530 -28.45766 -27.63566 -24.21030 -23.84732 -22.93381 -22.52142 -21.98419 -20.17808 -19.73176 -18.49942 -18.26874 -17.85023 -17.69094 -16.91161 -16.87983 -16.73591 -16.65266 -16.09109 -15.79250 -15.53205 -15.41296 -14.96942 -14.91194 -14.68246 -14.47702 -13.99293 -13.89107 -13.59274 -13.46028 -13.18123 -12.93556 -12.88721 -12.79705 -12.61867 -12.46669 -11.79886 -11.68000 -11.32124 -11.15406 -11.06975 -11.04149 -10.81622 -10.54919 -10.28848 -10.21396 -9.83381 -8.70040 -8.35483 -6.14868 0.62919 1.18609 1.27151 1.42452 1.43020 1.46125 1.54092 1.55558 1.72452 2.00350 2.26042 2.30995 2.98681 3.15105 3.30463 3.41897 3.50422 3.63124 3.69004 3.92509 3.98652 4.00554 4.03742 4.08273 4.28092 4.34364 4.44819 4.47340 4.51854 4.65121 4.71954 4.91174 5.02978 5.21332 5.25469 5.34744 5.40740 5.42444 5.87294 6.18866 6.43724 6.60720 6.97905 7.05255 7.09702 7.19366 8.73919 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.001888 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.112866 B =14826.472488 C =15881.930033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.009 3.991 3 Si 1.003 2.997 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.087 0.913 9 S -0.162 6.162 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.572 6.572 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.121 3.879 16 H 0.128 0.872 17 C -0.143 4.143 18 C 0.108 3.892 19 N -0.646 5.646 20 C 0.514 3.486 21 O -0.573 6.573 22 C 0.122 3.878 23 N -0.380 5.380 24 C 0.266 3.734 25 N -0.577 5.577 26 C 0.184 3.816 27 N -0.342 5.342 28 H 0.271 0.729 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.422 0.578 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.188 0.812 40 H 0.273 0.727 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.959 -31.440 3.646 37.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.691 4.691 8 H 0.105 0.895 9 S 0.065 5.935 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.450 6.450 13 N -0.359 5.359 14 C -0.003 4.003 15 C 0.017 3.983 16 H 0.146 0.854 17 C -0.181 4.181 18 C -0.012 4.012 19 N -0.384 5.384 20 C 0.303 3.697 21 O -0.450 6.450 22 C -0.003 4.003 23 N -0.171 5.171 24 C -0.029 4.029 25 N -0.305 5.305 26 C -0.119 4.119 27 N -0.169 5.169 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.205 0.795 40 H 0.288 0.712 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 16.885 -31.229 3.378 35.661 hybrid contribution 1.233 1.621 -0.344 2.065 sum 18.118 -29.608 3.033 34.844 Atomic orbital electron populations 1.70203 1.08130 1.28620 1.48035 1.26209 0.95996 1.03560 0.93740 0.84896 0.78242 0.75709 0.78760 1.19408 1.20402 1.17789 1.23204 0.95420 0.91648 1.58834 0.89504 1.85748 1.10988 0.99696 1.97087 1.23336 1.03413 0.93496 1.07265 1.20250 0.86157 0.87013 0.74945 1.90722 1.18017 1.86203 1.50097 1.45461 1.10459 1.04279 1.75721 1.21372 0.97249 0.80991 1.00638 1.23166 0.94496 0.80695 0.99903 0.85406 1.23546 1.04349 0.97284 0.92884 1.23339 0.92602 0.98032 0.87205 1.49849 1.37039 1.09953 1.41510 1.20881 0.79628 0.90375 0.78818 1.90861 1.41326 1.72404 1.40453 1.21902 0.91392 0.89379 0.97589 1.50192 1.06606 1.30660 1.29658 1.27095 1.00074 0.89873 0.85900 1.70524 1.00513 1.28777 1.30646 1.26431 1.02001 0.91382 0.92091 1.78156 0.89987 1.23540 1.25200 0.92037 0.86309 0.86936 0.74001 0.94736 0.93360 0.85337 0.89830 0.87425 0.85321 0.84179 0.79477 0.71171 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.21 13.22 21.65 0.29 -56.93 16 2 C 0.01 0.54 5.49 84.86 0.47 1.01 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.54 -31.25 9.50 67.96 0.65 -30.60 16 8 H 0.09 4.56 7.80 -2.91 -0.02 4.54 16 9 S -0.16 -9.27 20.57 -56.49 -1.16 -10.43 16 10 C -0.12 -4.95 6.16 71.23 0.44 -4.51 16 11 C 0.53 20.71 7.85 87.66 0.69 21.40 16 12 O -0.57 -29.28 15.86 -3.05 -0.05 -29.33 16 13 N -0.70 -18.20 5.55 -463.05 -2.57 -20.77 16 14 C 0.12 3.24 5.39 86.38 0.47 3.70 16 15 C 0.12 1.52 4.09 41.79 0.17 1.69 16 16 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 17 C -0.14 -0.65 8.01 30.84 0.25 -0.40 16 18 C 0.11 -0.03 8.41 83.09 0.70 0.67 16 19 N -0.65 -7.51 3.57 -834.27 -2.98 -10.49 16 20 C 0.51 9.54 8.04 87.66 0.70 10.24 16 21 O -0.57 -19.08 15.12 -3.03 -0.05 -19.13 16 22 C 0.12 0.95 6.87 85.64 0.59 1.54 16 23 N -0.38 -6.47 3.41 -355.78 -1.21 -7.68 16 24 C 0.27 3.49 12.63 180.36 2.28 5.77 16 25 N -0.58 -12.12 11.19 -204.00 -2.28 -14.40 16 26 C 0.18 4.31 13.03 180.77 2.36 6.67 16 27 N -0.34 -9.16 11.81 -61.25 -0.72 -9.88 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 30 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 31 H 0.42 6.67 8.48 -92.71 -0.79 5.88 16 32 H 0.03 1.25 7.05 -2.39 -0.02 1.23 16 33 H 0.05 1.51 7.89 -2.39 -0.02 1.49 16 34 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.08 0.74 7.95 -2.39 -0.02 0.72 16 36 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.19 -0.83 8.09 -2.39 -0.02 -0.84 16 40 H 0.27 -0.04 8.06 -2.91 -0.02 -0.07 16 41 H 0.23 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -108.78 375.30 1.32 -107.46 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.28 Total: 8.59 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 9.75 Total: 17.17 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -9.48 Total: -120.16 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.09 Total: -48.46 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.16 Total: -10.43 kcal Total: -108.78 1.32 -107.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584587373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.801 kcal (2) G-P(sol) polarization free energy of solvation -108.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds