Wall clock time and date at job start Tue Mar 31 2020 23:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91155 * 2 1 4 4 C 1.55380 * 111.18783 * 235.94128 * 2 1 3 5 5 N 1.47430 * 104.87165 * 204.98031 * 4 2 1 6 6 C 1.34779 * 125.64365 * 204.09639 * 5 4 2 7 7 O 1.21613 * 120.00517 * 0.02562 * 6 5 4 8 8 C 1.47236 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.37000 * 127.19083 * 180.02562 * 8 6 5 10 10 N 1.33327 * 106.37418 * 179.97438 * 9 8 6 11 11 N 1.28513 * 109.43716 * 359.97438 * 10 9 8 12 12 N 1.28720 * 110.63732 * 359.71674 * 11 10 9 13 13 H 0.96998 * 126.03289 * 180.30187 * 12 11 10 14 14 C 1.47016 * 108.70421 * 24.13021 * 5 4 2 15 15 C 1.54320 * 107.27214 * 358.94332 * 14 5 4 16 16 H 1.08998 * 110.72372 * 219.26581 * 15 14 5 17 17 N 1.46504 * 110.72293 * 96.16646 * 15 14 5 18 18 C 1.34775 * 119.99561 * 88.84072 * 17 15 14 19 19 O 1.21282 * 120.00577 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99768 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00182 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31630 * 119.99849 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46755 * 90.00066 * 26 24 22 28 28 H 1.48495 * 109.46931 * 210.00080 * 26 24 22 29 29 H 1.48500 * 109.46738 * 330.00322 * 26 24 22 30 30 H 1.09007 * 109.47211 * 296.09519 * 1 2 3 31 31 H 1.08996 * 109.47319 * 56.09522 * 1 2 3 32 32 H 1.08996 * 109.47364 * 176.10016 * 1 2 3 33 33 H 1.08994 * 110.34567 * 86.12942 * 4 2 1 34 34 H 1.08998 * 110.44386 * 323.87920 * 4 2 1 35 35 H 1.08004 * 126.81447 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.88370 * 239.52263 * 14 5 4 37 37 H 1.09008 * 110.00960 * 118.42950 * 14 5 4 38 38 H 0.96993 * 120.00065 * 268.84330 * 17 15 14 39 39 H 1.09005 * 109.46867 * 60.00428 * 20 18 17 40 40 H 1.09000 * 109.47235 * 300.00468 * 20 18 17 41 41 H 0.97005 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4327 -1.2460 -0.7688 6 6 4.4556 -1.5655 -1.5862 7 8 4.3116 -1.5061 -2.7923 8 6 5.7474 -1.9864 -1.0189 9 6 6.8777 -2.3413 -1.7069 10 7 7.7961 -2.6457 -0.7895 11 7 7.2939 -2.4970 0.3841 12 7 6.0725 -2.0980 0.3077 13 1 5.4851 -1.9117 1.0568 14 6 3.4691 -1.2741 0.7007 15 6 2.0862 -0.8079 1.2023 16 1 2.1892 -0.1706 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2428 -2.5142 2.7235 19 8 1.9682 -2.0635 3.5846 20 6 0.3583 -3.6963 3.0261 21 16 0.6052 -4.2105 4.7439 22 6 -0.5163 -5.5673 4.8214 23 1 -1.0942 -5.8406 3.9509 24 6 -0.6562 -6.2856 6.0008 25 7 0.0485 -5.9528 7.0616 26 14 -1.8457 -7.7235 6.0832 27 1 -1.1403 -8.9721 5.6978 28 1 -2.3666 -7.8563 7.4675 29 1 -2.9758 -7.4851 5.1498 30 1 -0.3634 0.4521 0.9230 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1642 -0.1785 -2.0847 34 1 1.4600 -1.6760 -1.4042 35 1 7.0008 -2.3682 -2.7795 36 1 4.2428 -0.5985 1.0653 37 1 3.6676 -2.2876 1.0496 38 1 0.6464 -2.3176 0.8077 39 1 0.6128 -4.5205 2.3596 40 1 -0.6847 -3.4173 2.8770 41 1 -0.0495 -6.4545 7.8860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587165092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:27 Heat of formation + Delta-G solvation = 37.755129 kcal Electronic energy + Delta-G solvation = -26684.664964 eV Core-core repulsion = 22728.604892 eV Total energy + Delta-G solvation = -3956.060073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.74550 -40.94749 -39.41783 -37.95434 -34.79220 -33.80173 -32.75696 -32.51556 -31.65371 -30.36664 -28.48227 -27.38495 -25.58924 -24.94832 -23.22762 -23.05922 -21.43659 -21.03947 -20.43715 -18.53058 -18.05974 -17.40234 -17.12357 -16.73988 -16.57713 -16.10331 -15.69668 -15.30840 -14.90979 -14.88061 -14.67722 -14.21863 -14.00510 -13.75717 -13.58515 -13.18328 -13.04577 -12.81643 -12.66602 -12.53300 -12.20166 -11.96762 -11.64804 -11.51218 -11.25468 -11.14038 -11.12642 -11.10998 -10.84103 -10.72938 -9.95130 -9.92012 -9.70238 -9.41732 -9.25477 -9.14411 -8.37081 -6.61632 -6.30748 -4.02551 0.47666 1.92123 1.96037 2.29614 2.57815 2.76952 2.77767 3.16529 3.20188 3.24498 3.49042 3.54975 3.86166 3.88882 4.11572 4.20187 4.27727 4.52438 4.54787 4.65116 4.72834 4.79977 4.87873 4.97692 5.05028 5.08878 5.21726 5.23349 5.43157 5.45473 5.49278 5.59991 5.62796 5.71282 5.77937 5.97929 6.17251 6.26920 6.69873 7.35977 7.39556 7.51018 7.89746 8.26005 8.30247 9.15014 10.76596 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002687 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.170980 B =10417.117705 C =11667.214658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.102 0.898 4 C 0.110 3.890 5 N -0.613 5.613 6 C 0.614 3.386 7 O -0.513 6.513 8 C -0.069 4.069 9 C 0.035 3.965 10 N -0.271 5.271 11 N -0.041 5.041 12 N -0.375 5.375 13 H 0.452 0.548 14 C 0.065 3.935 15 C 0.146 3.854 16 H 0.118 0.882 17 N -0.730 5.730 18 C 0.535 3.465 19 O -0.513 6.513 20 C -0.156 4.156 21 S -0.058 6.058 22 C -0.538 4.538 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.205 0.795 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 13.323 -17.993 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.121 0.879 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.400 3.600 7 O -0.387 6.387 8 C -0.203 4.203 9 C -0.125 4.125 10 N -0.135 5.135 11 N -0.023 5.023 12 N -0.107 5.107 13 H 0.304 0.696 14 C -0.060 4.060 15 C 0.039 3.961 16 H 0.136 0.864 17 N -0.386 5.386 18 C 0.321 3.679 19 O -0.387 6.387 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.686 4.686 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.222 0.778 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.264 13.636 -16.220 22.097 hybrid contribution -3.046 -1.333 -1.334 3.582 sum 3.219 12.303 -17.554 21.677 Atomic orbital electron populations 1.21658 0.92397 1.02714 1.03109 1.22794 0.97581 0.99647 0.92937 0.87939 1.22532 0.81706 0.98864 0.98087 1.48317 1.12754 1.66980 1.06695 1.16325 0.80673 0.77432 0.85522 1.90880 1.81795 1.53172 1.12853 1.22250 0.98990 1.14552 0.84531 1.23932 0.87568 0.99179 1.01781 1.75038 1.26139 1.17781 0.94570 1.78282 0.92081 1.13054 1.18905 1.46304 1.11973 1.44041 1.08361 0.69615 1.22938 1.00614 1.02389 0.80040 1.21756 0.87283 0.88268 0.98815 0.86424 1.46094 1.45210 1.33164 1.14107 1.20427 0.82564 0.83841 0.81020 1.90716 1.40286 1.62064 1.45593 1.23547 1.01418 0.97621 1.08016 1.85389 1.56922 1.39319 1.01486 1.22846 1.27826 1.17163 1.00745 0.90897 1.24994 0.96221 0.97656 0.94639 1.70007 1.38892 1.39461 1.01822 0.86162 0.80337 0.81316 0.77672 1.20220 1.20689 1.19667 0.91140 0.91611 0.91986 0.89271 0.90496 0.77804 0.90217 0.90053 0.76306 0.89182 0.89002 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.86 37.16 0.33 -0.33 16 2 C -0.11 -0.56 3.53 -88.21 -0.31 -0.87 16 3 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 4 C 0.11 0.69 6.37 -2.27 -0.01 0.68 16 5 N -0.61 -4.86 3.33 -171.56 -0.57 -5.43 16 6 C 0.61 6.20 7.84 -12.60 -0.10 6.10 16 7 O -0.51 -6.46 17.18 5.27 0.09 -6.37 16 8 C -0.07 -0.68 6.98 -82.33 -0.57 -1.26 16 9 C 0.04 0.36 11.87 -17.35 -0.21 0.15 16 10 N -0.27 -3.30 12.35 30.47 0.38 -2.93 16 11 N -0.04 -0.49 13.35 60.35 0.81 0.31 16 12 N -0.37 -3.59 6.60 33.31 0.22 -3.37 16 13 H 0.45 3.45 5.14 -190.33 -0.98 2.47 16 14 C 0.06 0.48 4.88 -3.07 -0.01 0.46 16 15 C 0.15 1.10 3.04 -66.10 -0.20 0.90 16 16 H 0.12 1.00 7.62 -51.93 -0.40 0.60 16 17 N -0.73 -7.01 4.51 -52.03 -0.23 -7.25 16 18 C 0.53 8.12 7.85 -10.98 -0.09 8.03 16 19 O -0.51 -9.65 15.55 5.56 0.09 -9.56 16 20 C -0.16 -2.77 6.16 36.01 0.22 -2.55 16 21 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 22 C -0.54 -14.65 9.50 30.94 0.29 -14.36 16 23 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 25 N -0.87 -25.33 13.22 55.49 0.73 -24.59 16 26 Si 0.92 20.77 29.55 -169.99 -5.02 15.74 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.29 6.44 -51.93 -0.33 -0.05 16 33 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 34 H 0.08 0.46 8.00 -51.93 -0.42 0.05 16 35 H 0.21 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.08 0.46 7.12 -51.93 -0.37 0.09 16 37 H 0.08 0.70 7.20 -51.92 -0.37 0.33 16 38 H 0.40 3.02 7.01 -40.82 -0.29 2.73 16 39 H 0.09 1.50 8.14 -51.91 -0.42 1.07 16 40 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -35.36 361.34 -6.69 -42.05 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.65 Total: 0.71 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.76 Total: -1.08 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.33 Total: -43.26 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.36 -6.69 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587165092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.804 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds