Wall clock time and date at job start Tue Mar 31 2020 23:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91155 * 2 1 4 4 C 1.55380 * 111.18783 * 235.94128 * 2 1 3 5 5 N 1.47430 * 104.87165 * 204.98031 * 4 2 1 6 6 C 1.34779 * 125.64365 * 204.09639 * 5 4 2 7 7 O 1.21613 * 120.00517 * 0.02562 * 6 5 4 8 8 C 1.47236 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.37000 * 127.19083 * 180.02562 * 8 6 5 10 10 N 1.33327 * 106.37418 * 179.97438 * 9 8 6 11 11 N 1.28513 * 109.43716 * 359.97438 * 10 9 8 12 12 N 1.28720 * 110.63732 * 359.71674 * 11 10 9 13 13 H 0.96998 * 126.03289 * 180.30187 * 12 11 10 14 14 C 1.47016 * 108.70421 * 24.13021 * 5 4 2 15 15 C 1.54320 * 107.27214 * 358.94332 * 14 5 4 16 16 H 1.08998 * 110.72372 * 219.26581 * 15 14 5 17 17 N 1.46504 * 110.72293 * 96.16646 * 15 14 5 18 18 C 1.34775 * 119.99561 * 88.84072 * 17 15 14 19 19 O 1.21282 * 120.00577 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99768 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47349 * 180.02562 * 20 18 17 22 22 C 1.76199 * 100.00182 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31630 * 119.99849 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46755 * 90.00066 * 26 24 22 28 28 H 1.48495 * 109.46931 * 210.00080 * 26 24 22 29 29 H 1.48500 * 109.46738 * 330.00322 * 26 24 22 30 30 H 1.09007 * 109.47211 * 296.09519 * 1 2 3 31 31 H 1.08996 * 109.47319 * 56.09522 * 1 2 3 32 32 H 1.08996 * 109.47364 * 176.10016 * 1 2 3 33 33 H 1.08994 * 110.34567 * 86.12942 * 4 2 1 34 34 H 1.08998 * 110.44386 * 323.87920 * 4 2 1 35 35 H 1.08004 * 126.81447 * 0.02562 * 9 8 6 36 36 H 1.09000 * 109.88370 * 239.52263 * 14 5 4 37 37 H 1.09008 * 110.00960 * 118.42950 * 14 5 4 38 38 H 0.96993 * 120.00065 * 268.84330 * 17 15 14 39 39 H 1.09005 * 109.46867 * 60.00428 * 20 18 17 40 40 H 1.09000 * 109.47235 * 300.00468 * 20 18 17 41 41 H 0.97005 * 119.99878 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0916 -0.8114 -1.2003 5 7 3.4327 -1.2460 -0.7688 6 6 4.4556 -1.5655 -1.5862 7 8 4.3116 -1.5061 -2.7923 8 6 5.7474 -1.9864 -1.0189 9 6 6.8777 -2.3413 -1.7069 10 7 7.7961 -2.6457 -0.7895 11 7 7.2939 -2.4970 0.3841 12 7 6.0725 -2.0980 0.3077 13 1 5.4851 -1.9117 1.0568 14 6 3.4691 -1.2741 0.7007 15 6 2.0862 -0.8079 1.2023 16 1 2.1892 -0.1706 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2428 -2.5142 2.7235 19 8 1.9682 -2.0635 3.5846 20 6 0.3583 -3.6963 3.0261 21 16 0.6052 -4.2105 4.7439 22 6 -0.5163 -5.5673 4.8214 23 1 -1.0942 -5.8406 3.9509 24 6 -0.6562 -6.2856 6.0008 25 7 0.0485 -5.9528 7.0616 26 14 -1.8457 -7.7235 6.0832 27 1 -1.1403 -8.9721 5.6978 28 1 -2.3666 -7.8563 7.4675 29 1 -2.9758 -7.4851 5.1498 30 1 -0.3634 0.4521 0.9230 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1642 -0.1785 -2.0847 34 1 1.4600 -1.6760 -1.4042 35 1 7.0008 -2.3682 -2.7795 36 1 4.2428 -0.5985 1.0653 37 1 3.6676 -2.2876 1.0496 38 1 0.6464 -2.3176 0.8077 39 1 0.6128 -4.5205 2.3596 40 1 -0.6847 -3.4173 2.8770 41 1 -0.0495 -6.4545 7.8860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587165092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:26 Heat of formation + Delta-G solvation = 10.674889 kcal Electronic energy + Delta-G solvation = -26685.839252 eV Core-core repulsion = 22728.604892 eV Total energy + Delta-G solvation = -3957.234360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.56920 -41.71525 -40.43785 -38.85637 -35.63027 -34.68702 -34.58202 -33.50455 -32.43716 -31.39039 -29.52606 -27.93924 -27.65448 -25.70205 -24.02486 -23.81550 -22.32630 -21.86858 -21.15747 -19.88315 -19.27319 -18.29672 -17.90522 -17.73872 -17.57467 -16.94976 -16.88022 -16.59240 -16.41407 -15.85583 -15.56164 -15.42789 -14.87398 -14.75793 -14.56760 -14.39193 -13.88601 -13.60241 -13.53761 -13.39323 -13.23328 -13.16676 -12.90706 -12.65284 -12.60266 -12.38917 -12.03377 -11.95027 -11.79664 -11.69454 -11.54949 -11.15039 -10.99277 -10.78149 -10.31728 -10.27562 -9.98266 -8.65511 -8.35707 -6.12406 -0.32608 1.07843 1.20788 1.26808 1.41287 1.46423 1.55775 1.56216 1.60103 1.80077 2.19094 2.27429 2.87031 2.99015 3.19694 3.24849 3.31627 3.48178 3.73625 3.80943 3.87730 3.99484 4.00710 4.14597 4.16619 4.30477 4.49199 4.52452 4.58174 4.66984 4.75452 4.82548 4.90750 5.03526 5.13866 5.38557 5.41003 5.41752 5.43914 5.98096 6.18975 6.41432 6.62903 7.05780 7.06654 7.17902 8.73058 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002687 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.170980 B =10417.117705 C =11667.214658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.120 0.880 4 C 0.105 3.895 5 N -0.606 5.606 6 C 0.617 3.383 7 O -0.540 6.540 8 C -0.068 4.068 9 C 0.033 3.967 10 N -0.293 5.293 11 N -0.065 5.065 12 N -0.362 5.362 13 H 0.458 0.542 14 C 0.063 3.937 15 C 0.142 3.858 16 H 0.114 0.886 17 N -0.704 5.704 18 C 0.541 3.459 19 O -0.554 6.554 20 C -0.134 4.134 21 S -0.145 6.145 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.258 1.258 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.415 0.585 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 13.734 -20.023 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.138 0.862 4 C -0.016 4.016 5 N -0.339 5.339 6 C 0.403 3.597 7 O -0.416 6.416 8 C -0.202 4.202 9 C -0.127 4.127 10 N -0.157 5.157 11 N -0.047 5.047 12 N -0.095 5.095 13 H 0.312 0.688 14 C -0.061 4.061 15 C 0.036 3.964 16 H 0.131 0.869 17 N -0.359 5.359 18 C 0.327 3.673 19 O -0.431 6.431 20 C -0.286 4.286 21 S 0.082 5.918 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.204 1.204 29 H -0.182 1.182 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.243 0.757 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.254 0.746 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.699 14.069 -18.279 23.540 hybrid contribution -2.579 -1.360 -0.817 3.028 sum 2.120 12.709 -19.096 23.036 Atomic orbital electron populations 1.21680 0.91698 1.03080 1.03489 1.22759 0.97954 0.99786 0.90569 0.86205 1.22727 0.80779 0.99425 0.98688 1.48316 1.12956 1.65885 1.06712 1.16258 0.80870 0.77332 0.85250 1.90870 1.82224 1.54630 1.13857 1.22334 0.99123 1.14301 0.84483 1.24358 0.87196 0.98493 1.02638 1.75011 1.27082 1.18618 0.94998 1.78246 0.93010 1.14226 1.19169 1.46287 1.11478 1.43129 1.08645 0.68771 1.22963 1.01074 1.02364 0.79709 1.21930 0.87207 0.87442 0.99833 0.86860 1.45779 1.44866 1.32899 1.12331 1.19944 0.81804 0.83256 0.82263 1.90713 1.41931 1.63150 1.47312 1.23400 1.03330 0.99364 1.02463 1.85505 1.57584 1.39895 1.08783 1.23203 1.27744 1.17329 1.01188 0.90020 1.26067 0.98052 1.00686 0.94203 1.70166 1.40852 1.41073 1.02546 0.85014 0.78088 0.77369 0.77917 1.19554 1.20404 1.18160 0.91788 0.90085 0.91817 0.88792 0.89815 0.75715 0.88313 0.91088 0.74635 0.87626 0.87111 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.86 71.98 0.64 -0.22 16 2 C -0.09 -0.64 3.53 -9.24 -0.03 -0.67 16 3 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 4 C 0.10 1.00 6.37 87.02 0.55 1.55 16 5 N -0.61 -8.22 3.33 -814.94 -2.71 -10.93 16 6 C 0.62 11.40 7.84 86.61 0.68 12.08 16 7 O -0.54 -12.74 17.18 -4.07 -0.07 -12.81 16 8 C -0.07 -1.26 6.98 40.41 0.28 -0.98 16 9 C 0.03 0.65 11.87 84.18 1.00 1.65 16 10 N -0.29 -7.07 12.35 -57.50 -0.71 -7.78 16 11 N -0.06 -1.54 13.35 37.02 0.49 -1.05 16 12 N -0.36 -6.68 6.60 -48.52 -0.32 -7.00 16 13 H 0.46 6.61 5.14 -219.90 -1.13 5.48 16 14 C 0.06 0.81 4.88 86.73 0.42 1.23 16 15 C 0.14 1.82 3.04 46.18 0.14 1.96 16 16 H 0.11 1.70 7.62 -2.39 -0.02 1.69 16 17 N -0.70 -11.90 4.51 -436.91 -1.97 -13.87 16 18 C 0.54 15.81 7.85 87.66 0.69 16.50 16 19 O -0.55 -20.83 15.55 -3.04 -0.05 -20.88 16 20 C -0.13 -4.63 6.16 71.24 0.44 -4.19 16 21 S -0.14 -7.48 20.57 -56.49 -1.16 -8.64 16 22 C -0.55 -29.85 9.50 67.96 0.65 -29.21 16 23 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 24 C 0.01 0.82 5.49 84.86 0.47 1.29 16 25 N -0.91 -54.28 13.22 21.65 0.29 -54.00 16 26 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.37 6.44 -2.39 -0.02 0.35 16 33 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 34 H 0.08 0.73 8.00 -2.39 -0.02 0.71 16 35 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.10 0.94 7.12 -2.39 -0.02 0.92 16 37 H 0.07 1.12 7.20 -2.38 -0.02 1.10 16 38 H 0.42 4.93 7.01 -92.71 -0.65 4.28 16 39 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 41 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -78.70 361.34 1.06 -77.64 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.68 Total: 13.97 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.92 Total: 0.98 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.93 Total: -94.62 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.12 Total: -33.70 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Total: -78.70 1.06 -77.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587165092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.315 kcal (2) G-P(sol) polarization free energy of solvation -78.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds