Wall clock time and date at job start Tue Mar 31 2020 23:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.88773 * 2 1 4 4 C 1.54916 * 111.00070 * 123.92045 * 2 1 3 5 5 N 1.47422 * 104.82909 * 155.08661 * 4 2 1 6 6 C 1.34779 * 125.65051 * 155.82686 * 5 4 2 7 7 O 1.21621 * 119.99708 * 359.97438 * 6 5 4 8 8 C 1.47229 * 120.00289 * 179.97438 * 6 5 4 9 9 C 1.37007 * 127.19021 * 179.97438 * 8 6 5 10 10 N 1.33315 * 106.37353 * 180.02562 * 9 8 6 11 11 N 1.28521 * 109.44183 * 0.02562 * 10 9 8 12 12 N 1.28714 * 110.62990 * 359.71407 * 11 10 9 13 13 H 0.97008 * 126.03060 * 180.29961 * 12 11 10 14 14 C 1.47021 * 108.70504 * 335.86736 * 5 4 2 15 15 C 1.54324 * 107.27185 * 1.06157 * 14 5 4 16 16 H 1.09002 * 110.87115 * 140.62197 * 15 14 5 17 17 N 1.46497 * 110.72210 * 263.83217 * 15 14 5 18 18 C 1.34780 * 119.99566 * 268.52280 * 17 15 14 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 15 21 21 S 1.81002 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.76193 * 100.00049 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00056 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99640 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00053 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47361 * 89.99587 * 26 24 22 28 28 H 1.48497 * 109.47059 * 210.00081 * 26 24 22 29 29 H 1.48507 * 109.47001 * 329.99878 * 26 24 22 30 30 H 1.09005 * 109.46739 * 183.88142 * 1 2 3 31 31 H 1.08996 * 109.47205 * 303.88271 * 1 2 3 32 32 H 1.09002 * 109.46734 * 63.88362 * 1 2 3 33 33 H 1.09003 * 110.36348 * 273.91695 * 4 2 1 34 34 H 1.08996 * 110.36652 * 36.13545 * 4 2 1 35 35 H 1.08002 * 126.81234 * 0.02562 * 9 8 6 36 36 H 1.08997 * 109.88756 * 241.64497 * 14 5 4 37 37 H 1.09003 * 109.88505 * 120.47848 * 14 5 4 38 38 H 0.96995 * 120.00423 * 88.51585 * 17 15 14 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 0.97010 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8071 1.2001 5 7 3.4271 -1.2433 0.7730 6 6 4.4481 -1.5607 1.5936 7 8 4.3014 -1.4977 2.7993 8 6 5.7411 -1.9835 1.0305 9 6 6.8698 -2.3367 1.7221 10 7 7.7901 -2.6440 0.8078 11 7 7.2906 -2.4986 -0.3675 12 7 6.0656 -2.1104 -0.2948 13 1 5.4766 -1.9365 -1.0457 14 6 3.4675 -1.2740 -0.6963 15 6 2.0862 -0.8076 -1.2025 16 1 2.1893 -0.1700 -2.0805 17 7 1.2268 -1.9570 -1.4967 18 6 1.2062 -2.4827 -2.7376 19 8 1.8987 -2.0040 -3.6107 20 6 0.3218 -3.6647 -3.0406 21 16 0.5152 -4.1333 -4.7782 22 6 -0.5983 -5.4967 -4.8531 23 1 -1.1450 -5.7965 -3.9712 24 6 -0.7722 -6.1861 -6.0453 25 7 -0.1055 -5.8209 -7.1198 26 14 -1.9522 -7.6319 -6.1246 27 1 -3.3056 -7.1466 -6.4959 28 1 -1.4776 -8.6028 -7.1430 29 1 -2.0114 -8.2959 -4.7975 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9228 33 1 2.1560 -0.1726 2.0837 34 1 1.4507 -1.6698 1.4032 35 1 6.9902 -2.3612 2.7951 36 1 3.6650 -2.2890 -1.0407 37 1 4.2426 -0.5994 -1.0600 38 1 0.6728 -2.3397 -0.7986 39 1 0.6051 -4.5030 -2.4041 40 1 -0.7179 -3.3988 -2.8499 41 1 -0.2273 -6.3024 -7.9531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587165095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:31 Heat of formation + Delta-G solvation = 37.562899 kcal Electronic energy + Delta-G solvation = -26667.726298 eV Core-core repulsion = 22711.657890 eV Total energy + Delta-G solvation = -3956.068408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.75521 -40.96093 -39.42030 -37.96869 -34.79025 -33.81029 -32.77172 -32.51757 -31.66006 -30.37180 -28.48590 -27.38201 -25.58992 -24.94978 -23.23308 -23.06291 -21.43905 -21.05183 -20.43549 -18.54267 -18.06362 -17.40096 -17.12786 -16.75504 -16.58074 -16.08964 -15.70674 -15.31627 -14.91391 -14.88179 -14.68477 -14.22469 -14.00102 -13.75918 -13.58399 -13.19427 -13.04148 -12.80278 -12.66632 -12.54038 -12.20512 -11.96517 -11.65414 -11.50769 -11.26443 -11.14164 -11.13601 -11.11034 -10.84186 -10.73218 -9.95915 -9.92064 -9.70341 -9.42228 -9.25642 -9.14543 -8.37141 -6.61737 -6.30849 -4.02615 0.46814 1.91278 1.95252 2.28903 2.57159 2.76752 2.77634 3.16318 3.20161 3.24509 3.48954 3.55197 3.86205 3.88796 4.11493 4.19669 4.28616 4.52145 4.54175 4.65257 4.72040 4.79348 4.87734 4.97807 5.04961 5.08937 5.21796 5.23860 5.43654 5.45260 5.49718 5.59623 5.62984 5.71208 5.78865 5.97863 6.16261 6.26801 6.69343 7.35723 7.39101 7.50923 7.88825 8.25898 8.30208 9.14929 10.76501 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.002659 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.796859 B =10526.333742 C =11746.077365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.102 0.898 4 C 0.110 3.890 5 N -0.613 5.613 6 C 0.614 3.386 7 O -0.513 6.513 8 C -0.069 4.069 9 C 0.035 3.965 10 N -0.271 5.271 11 N -0.041 5.041 12 N -0.375 5.375 13 H 0.452 0.548 14 C 0.065 3.935 15 C 0.146 3.854 16 H 0.120 0.880 17 N -0.730 5.730 18 C 0.535 3.465 19 O -0.513 6.513 20 C -0.155 4.155 21 S -0.058 6.058 22 C -0.538 4.538 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.272 1.272 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.205 0.795 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 12.873 18.161 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.120 0.880 4 C -0.012 4.012 5 N -0.348 5.348 6 C 0.400 3.600 7 O -0.387 6.387 8 C -0.203 4.203 9 C -0.124 4.124 10 N -0.135 5.135 11 N -0.023 5.023 12 N -0.107 5.107 13 H 0.304 0.696 14 C -0.060 4.060 15 C 0.038 3.962 16 H 0.137 0.863 17 N -0.385 5.385 18 C 0.322 3.678 19 O -0.386 6.386 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.686 4.686 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.222 0.778 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.691 13.232 16.372 22.088 hybrid contribution -3.006 -1.373 1.352 3.570 sum 3.685 11.859 17.724 21.641 Atomic orbital electron populations 1.21661 0.92398 1.02724 1.03075 1.22726 0.97638 0.99694 0.92993 0.87967 1.22455 0.81687 0.98880 0.98158 1.48328 1.12763 1.66991 1.06675 1.16327 0.80674 0.77455 0.85511 1.90883 1.81733 1.53168 1.12909 1.22251 0.99013 1.14500 0.84553 1.23932 0.87655 0.99071 1.01791 1.75036 1.26232 1.17681 0.94577 1.78284 0.91929 1.13290 1.18842 1.46301 1.11755 1.44223 1.08400 0.69620 1.22946 1.00674 1.02330 0.80066 1.21762 0.87233 0.88303 0.98854 0.86255 1.46079 1.46578 1.33274 1.12611 1.20428 0.82223 0.83992 0.81190 1.90716 1.41769 1.60767 1.45380 1.23547 1.01338 0.97609 1.08106 1.85389 1.58546 1.39924 0.99254 1.22846 1.29126 1.17249 0.99362 0.90897 1.24993 0.96203 0.97660 0.94656 1.70005 1.39575 1.39864 1.00734 0.86162 0.80303 0.80881 0.78140 1.20214 1.20694 1.19672 0.91981 0.91652 0.91171 0.89261 0.90498 0.77801 0.90093 0.90156 0.76329 0.89177 0.89002 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.85 37.16 0.33 -0.35 16 2 C -0.11 -0.57 3.51 -88.46 -0.31 -0.88 16 3 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.11 0.69 6.33 -2.53 -0.02 0.67 16 5 N -0.61 -4.80 3.33 -171.86 -0.57 -5.37 16 6 C 0.61 6.13 7.84 -12.61 -0.10 6.03 16 7 O -0.51 -6.42 17.18 5.26 0.09 -6.33 16 8 C -0.07 -0.67 6.98 -82.34 -0.57 -1.25 16 9 C 0.04 0.36 11.87 -17.35 -0.21 0.15 16 10 N -0.27 -3.27 12.35 30.47 0.38 -2.90 16 11 N -0.04 -0.49 13.35 60.35 0.81 0.32 16 12 N -0.37 -3.54 6.60 33.31 0.22 -3.32 16 13 H 0.45 3.37 5.14 -190.32 -0.98 2.39 16 14 C 0.06 0.47 4.87 -3.06 -0.01 0.45 16 15 C 0.15 1.10 3.10 -66.10 -0.20 0.90 16 16 H 0.12 1.02 7.55 -51.93 -0.39 0.63 16 17 N -0.73 -6.99 4.45 -52.03 -0.23 -7.22 16 18 C 0.53 8.11 7.85 -10.98 -0.09 8.02 16 19 O -0.51 -9.65 15.51 5.56 0.09 -9.56 16 20 C -0.16 -2.76 6.16 36.01 0.22 -2.54 16 21 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 22 C -0.54 -14.64 9.50 30.94 0.29 -14.35 16 23 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 25 N -0.87 -25.31 13.22 55.49 0.73 -24.58 16 26 Si 0.92 20.76 29.55 -169.99 -5.02 15.73 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 30 H 0.06 0.30 6.48 -51.93 -0.34 -0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 34 H 0.08 0.46 7.98 -51.93 -0.41 0.05 16 35 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.08 0.67 7.16 -51.93 -0.37 0.30 16 37 H 0.08 0.45 7.15 -51.93 -0.37 0.08 16 38 H 0.40 3.01 7.11 -40.82 -0.29 2.72 16 39 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 40 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -35.33 361.27 -6.70 -42.03 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.65 Total: 0.62 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.76 Total: -1.19 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 1.33 Total: -43.07 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.33 -6.70 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587165095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.591 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds