Wall clock time and date at job start Tue Mar 31 2020 23:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.88773 * 2 1 4 4 C 1.54916 * 111.00070 * 123.92045 * 2 1 3 5 5 N 1.47422 * 104.82909 * 155.08661 * 4 2 1 6 6 C 1.34779 * 125.65051 * 155.82686 * 5 4 2 7 7 O 1.21621 * 119.99708 * 359.97438 * 6 5 4 8 8 C 1.47229 * 120.00289 * 179.97438 * 6 5 4 9 9 C 1.37007 * 127.19021 * 179.97438 * 8 6 5 10 10 N 1.33315 * 106.37353 * 180.02562 * 9 8 6 11 11 N 1.28521 * 109.44183 * 0.02562 * 10 9 8 12 12 N 1.28714 * 110.62990 * 359.71407 * 11 10 9 13 13 H 0.97008 * 126.03060 * 180.29961 * 12 11 10 14 14 C 1.47021 * 108.70504 * 335.86736 * 5 4 2 15 15 C 1.54324 * 107.27185 * 1.06157 * 14 5 4 16 16 H 1.09002 * 110.87115 * 140.62197 * 15 14 5 17 17 N 1.46497 * 110.72210 * 263.83217 * 15 14 5 18 18 C 1.34780 * 119.99566 * 268.52280 * 17 15 14 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 15 21 21 S 1.81002 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.76193 * 100.00049 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00056 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99640 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00053 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47361 * 89.99587 * 26 24 22 28 28 H 1.48497 * 109.47059 * 210.00081 * 26 24 22 29 29 H 1.48507 * 109.47001 * 329.99878 * 26 24 22 30 30 H 1.09005 * 109.46739 * 183.88142 * 1 2 3 31 31 H 1.08996 * 109.47205 * 303.88271 * 1 2 3 32 32 H 1.09002 * 109.46734 * 63.88362 * 1 2 3 33 33 H 1.09003 * 110.36348 * 273.91695 * 4 2 1 34 34 H 1.08996 * 110.36652 * 36.13545 * 4 2 1 35 35 H 1.08002 * 126.81234 * 0.02562 * 9 8 6 36 36 H 1.08997 * 109.88756 * 241.64497 * 14 5 4 37 37 H 1.09003 * 109.88505 * 120.47848 * 14 5 4 38 38 H 0.96995 * 120.00423 * 88.51585 * 17 15 14 39 39 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 40 40 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 41 41 H 0.97010 * 119.99946 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8071 1.2001 5 7 3.4271 -1.2433 0.7730 6 6 4.4481 -1.5607 1.5936 7 8 4.3014 -1.4977 2.7993 8 6 5.7411 -1.9835 1.0305 9 6 6.8698 -2.3367 1.7221 10 7 7.7901 -2.6440 0.8078 11 7 7.2906 -2.4986 -0.3675 12 7 6.0656 -2.1104 -0.2948 13 1 5.4766 -1.9365 -1.0457 14 6 3.4675 -1.2740 -0.6963 15 6 2.0862 -0.8076 -1.2025 16 1 2.1893 -0.1700 -2.0805 17 7 1.2268 -1.9570 -1.4967 18 6 1.2062 -2.4827 -2.7376 19 8 1.8987 -2.0040 -3.6107 20 6 0.3218 -3.6647 -3.0406 21 16 0.5152 -4.1333 -4.7782 22 6 -0.5983 -5.4967 -4.8531 23 1 -1.1450 -5.7965 -3.9712 24 6 -0.7722 -6.1861 -6.0453 25 7 -0.1055 -5.8209 -7.1198 26 14 -1.9522 -7.6319 -6.1246 27 1 -3.3056 -7.1466 -6.4959 28 1 -1.4776 -8.6028 -7.1430 29 1 -2.0114 -8.2959 -4.7975 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9228 33 1 2.1560 -0.1726 2.0837 34 1 1.4507 -1.6698 1.4032 35 1 6.9902 -2.3612 2.7951 36 1 3.6650 -2.2890 -1.0407 37 1 4.2426 -0.5994 -1.0600 38 1 0.6728 -2.3397 -0.7986 39 1 0.6051 -4.5030 -2.4041 40 1 -0.7179 -3.3988 -2.8499 41 1 -0.2273 -6.3024 -7.9531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587165095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:30 Heat of formation + Delta-G solvation = 10.531697 kcal Electronic energy + Delta-G solvation = -26668.898459 eV Core-core repulsion = 22711.657890 eV Total energy + Delta-G solvation = -3957.240569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.56809 -41.72290 -40.43779 -38.86770 -35.62343 -34.68972 -34.58244 -33.51618 -32.43503 -31.39494 -29.52618 -27.93611 -27.65355 -25.69814 -24.02149 -23.81092 -22.32694 -21.87638 -21.15422 -19.88326 -19.27777 -18.29587 -17.90196 -17.73410 -17.58157 -16.93477 -16.87944 -16.59045 -16.42042 -15.85643 -15.56099 -15.43595 -14.86855 -14.75941 -14.56502 -14.38780 -13.89659 -13.60015 -13.53849 -13.38901 -13.22704 -13.16456 -12.90342 -12.65337 -12.60182 -12.38849 -12.03225 -11.95017 -11.80904 -11.69970 -11.54408 -11.14827 -10.99313 -10.77905 -10.31514 -10.27465 -9.98076 -8.65438 -8.35665 -6.12305 -0.32421 1.08048 1.20903 1.26884 1.41352 1.46400 1.55797 1.56231 1.60334 1.80299 2.19061 2.27475 2.87463 2.99075 3.20232 3.25043 3.31654 3.48661 3.74141 3.81498 3.88235 3.99653 4.00625 4.14420 4.16478 4.30628 4.49457 4.52609 4.58316 4.67200 4.75464 4.82748 4.90933 5.03499 5.13765 5.38416 5.41006 5.41804 5.44191 5.98342 6.19015 6.41363 6.63141 7.05962 7.06721 7.17990 8.73107 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.002659 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.796859 B =10526.333742 C =11746.077365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.119 0.881 4 C 0.105 3.895 5 N -0.606 5.606 6 C 0.617 3.383 7 O -0.540 6.540 8 C -0.067 4.067 9 C 0.033 3.967 10 N -0.293 5.293 11 N -0.064 5.064 12 N -0.362 5.362 13 H 0.459 0.541 14 C 0.063 3.937 15 C 0.142 3.858 16 H 0.114 0.886 17 N -0.703 5.703 18 C 0.542 3.458 19 O -0.554 6.554 20 C -0.134 4.134 21 S -0.145 6.145 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.994 3.006 27 H -0.268 1.268 28 H -0.280 1.280 29 H -0.259 1.259 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 13.193 20.213 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.137 0.863 4 C -0.016 4.016 5 N -0.339 5.339 6 C 0.403 3.597 7 O -0.416 6.416 8 C -0.202 4.202 9 C -0.127 4.127 10 N -0.157 5.157 11 N -0.046 5.046 12 N -0.095 5.095 13 H 0.312 0.688 14 C -0.061 4.061 15 C 0.036 3.964 16 H 0.132 0.868 17 N -0.358 5.358 18 C 0.328 3.672 19 O -0.431 6.431 20 C -0.286 4.286 21 S 0.082 5.918 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.816 3.184 27 H -0.193 1.193 28 H -0.205 1.205 29 H -0.183 1.183 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.243 0.757 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.253 0.747 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.225 13.571 18.453 23.494 hybrid contribution -2.569 -1.371 0.828 3.027 sum 2.656 12.199 19.281 22.970 Atomic orbital electron populations 1.21681 0.91770 1.03077 1.03396 1.22686 0.97958 0.99846 0.90719 0.86282 1.22642 0.80795 0.99437 0.98703 1.48324 1.12947 1.65903 1.06702 1.16259 0.80867 0.77345 0.85234 1.90873 1.82164 1.54634 1.13929 1.22326 0.99124 1.14255 0.84514 1.24355 0.87291 0.98392 1.02647 1.75010 1.27180 1.18529 0.95008 1.78248 0.92852 1.14448 1.19091 1.46283 1.11259 1.43297 1.08679 0.68755 1.22971 1.01040 1.02404 0.79710 1.21929 0.87224 0.87474 0.99808 0.86791 1.45761 1.46159 1.33069 1.10849 1.19943 0.81490 0.83347 0.82446 1.90713 1.43436 1.61872 1.47089 1.23399 1.03324 0.99442 1.02386 1.85506 1.59110 1.40423 1.06725 1.23202 1.29015 1.17413 0.99829 0.90025 1.26064 0.97998 1.00723 0.94222 1.70165 1.41518 1.41504 1.01446 0.85014 0.77840 0.76964 0.78568 1.19295 1.20518 1.18320 0.91812 0.90133 0.91923 0.88807 0.89770 0.75737 0.90949 0.88256 0.74661 0.87617 0.87100 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.85 71.98 0.64 -0.27 16 2 C -0.09 -0.66 3.51 -9.40 -0.03 -0.69 16 3 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 4 C 0.11 1.00 6.33 86.86 0.55 1.55 16 5 N -0.61 -8.07 3.33 -815.88 -2.71 -10.79 16 6 C 0.62 11.25 7.84 86.61 0.68 11.92 16 7 O -0.54 -12.65 17.18 -4.10 -0.07 -12.72 16 8 C -0.07 -1.24 6.98 40.41 0.28 -0.96 16 9 C 0.03 0.64 11.87 84.18 1.00 1.64 16 10 N -0.29 -6.99 12.35 -57.50 -0.71 -7.70 16 11 N -0.06 -1.51 13.35 37.02 0.49 -1.02 16 12 N -0.36 -6.53 6.60 -48.53 -0.32 -6.85 16 13 H 0.46 6.40 5.14 -219.89 -1.13 5.27 16 14 C 0.06 0.78 4.87 86.73 0.42 1.21 16 15 C 0.14 1.81 3.10 46.18 0.14 1.96 16 16 H 0.11 1.74 7.55 -2.39 -0.02 1.72 16 17 N -0.70 -11.86 4.45 -436.91 -1.95 -13.80 16 18 C 0.54 15.79 7.85 87.66 0.69 16.48 16 19 O -0.55 -20.84 15.51 -3.03 -0.05 -20.89 16 20 C -0.13 -4.62 6.16 71.24 0.44 -4.18 16 21 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 22 C -0.55 -29.82 9.50 67.96 0.65 -29.18 16 23 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 24 C 0.01 0.82 5.49 84.86 0.47 1.29 16 25 N -0.91 -54.24 13.22 21.65 0.29 -53.96 16 26 Si 0.99 42.31 29.55 68.60 2.03 44.33 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 30 H 0.06 0.39 6.48 -2.38 -0.02 0.37 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 34 H 0.08 0.72 7.98 -2.39 -0.02 0.70 16 35 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.07 1.09 7.16 -2.39 -0.02 1.07 16 37 H 0.10 0.91 7.15 -2.39 -0.02 0.90 16 38 H 0.42 4.92 7.11 -92.71 -0.66 4.26 16 39 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 41 H 0.27 15.04 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -78.60 361.27 1.07 -77.53 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.69 Total: 13.73 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.92 Total: 0.76 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -4.91 Total: -94.12 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.12 Total: -33.61 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -78.60 1.07 -77.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587165095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.065 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds