Wall clock time and date at job start Tue Mar 31 2020 23:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.78395 * 2 1 4 4 C 1.54330 * 110.71793 * 123.24182 * 2 1 3 5 5 N 1.47021 * 107.27026 * 140.55502 * 4 2 1 6 6 C 1.34775 * 125.64819 * 181.08993 * 5 4 2 7 7 O 1.21616 * 119.99997 * 174.90286 * 6 5 4 8 8 C 1.47233 * 119.99905 * 354.91051 * 6 5 4 9 9 C 1.37009 * 127.18726 * 185.50687 * 8 6 5 10 10 N 1.33323 * 106.36868 * 179.97438 * 9 8 6 11 11 N 1.28509 * 109.43967 * 359.97438 * 10 9 8 12 12 N 1.28712 * 110.64068 * 359.75205 * 11 10 9 13 13 H 0.97004 * 126.03854 * 180.26569 * 12 11 10 14 14 C 1.47430 * 108.70325 * 1.05656 * 5 4 2 15 15 C 1.54907 * 104.83234 * 335.87330 * 14 5 4 16 16 H 1.09008 * 111.00144 * 278.93158 * 15 14 5 17 17 N 1.46496 * 111.00543 * 155.08523 * 15 14 5 18 18 C 1.34776 * 120.00063 * 86.44928 * 17 15 14 19 19 O 1.21282 * 120.00284 * 0.02562 * 18 17 15 20 20 C 1.50704 * 120.00088 * 180.02562 * 18 17 15 21 21 S 1.80995 * 109.47294 * 179.97438 * 20 18 17 22 22 C 1.76204 * 100.00056 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00157 * 359.97438 * 22 21 20 24 24 C 1.38801 * 119.99715 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00160 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99626 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47205 * 89.99619 * 26 24 22 28 28 H 1.48498 * 109.47000 * 209.99594 * 26 24 22 29 29 H 1.48499 * 109.47215 * 329.99986 * 26 24 22 30 30 H 1.08999 * 109.46786 * 183.23473 * 1 2 3 31 31 H 1.09000 * 109.46780 * 303.23884 * 1 2 3 32 32 H 1.09001 * 109.46579 * 63.23828 * 1 2 3 33 33 H 1.09001 * 109.88137 * 21.13562 * 4 2 1 34 34 H 1.08999 * 109.87697 * 259.97180 * 4 2 1 35 35 H 1.07994 * 126.81622 * 359.91653 * 9 8 6 36 36 H 1.09004 * 110.36463 * 217.03126 * 14 5 4 37 37 H 1.09004 * 110.45643 * 94.76011 * 14 5 4 38 38 H 0.97002 * 119.99858 * 266.45275 * 17 15 14 39 39 H 1.09000 * 109.47151 * 300.00753 * 20 18 17 40 40 H 1.09006 * 109.46868 * 60.00024 * 20 18 17 41 41 H 0.97006 * 119.99929 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2445 -1.5508 0.7390 6 6 3.9915 -2.3847 1.4894 7 8 4.8817 -3.0337 0.9742 8 6 3.7297 -2.5102 2.9328 9 6 4.4569 -3.2258 3.8472 10 7 3.8560 -3.0515 5.0245 11 7 2.8327 -2.2888 4.8736 12 7 2.7116 -1.9302 3.6434 13 1 2.0203 -1.3532 3.2826 14 6 3.4633 -1.2499 -0.6876 15 6 2.0790 -0.7955 -1.2138 16 1 1.4451 -1.6536 -1.4376 17 7 2.2215 0.0696 -2.3875 18 6 2.3159 -0.4735 -3.6174 19 8 2.2825 -1.6783 -3.7526 20 6 2.4631 0.4163 -4.8247 21 16 2.5647 -0.6031 -6.3168 22 6 2.7279 0.6569 -7.5377 23 1 2.7395 1.6959 -7.2433 24 6 2.8405 0.3140 -8.8780 25 7 2.8259 -0.9523 -9.2369 26 14 3.0128 1.6498 -10.1724 27 1 4.4515 1.9508 -10.3847 28 1 2.4112 1.1840 -11.4476 29 1 2.3130 2.8767 -9.7138 30 1 -0.3633 -1.0260 0.0580 31 1 -0.3633 0.5633 0.8595 32 1 -0.3632 0.4628 -0.9176 33 1 1.3129 -1.4759 1.5775 34 1 2.3741 -0.1025 1.9977 35 1 5.3408 -3.8150 3.6528 36 1 3.7960 -2.1427 -1.2169 37 1 4.1937 -0.4486 -0.8002 38 1 2.2478 1.0332 -2.2794 39 1 1.6005 1.0791 -4.8949 40 1 3.3715 1.0113 -4.7290 41 1 2.9042 -1.1918 -10.1737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587165098.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:34 Heat of formation + Delta-G solvation = 5.848376 kcal Electronic energy + Delta-G solvation = -26176.284772 eV Core-core repulsion = 22218.841118 eV Total energy + Delta-G solvation = -3957.443653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.55376 -41.61668 -40.46876 -38.93722 -35.73764 -34.64398 -34.57481 -33.63386 -32.65225 -31.35999 -29.38793 -27.80512 -27.64785 -25.70530 -24.26799 -23.58806 -22.11110 -21.75224 -21.61014 -19.88304 -19.38162 -18.27898 -18.05936 -17.70646 -17.43129 -17.11888 -16.87422 -16.44097 -16.35914 -15.83774 -15.46802 -15.32688 -14.98661 -14.68611 -14.57221 -14.42595 -14.28712 -13.65170 -13.55850 -13.36531 -13.16723 -13.14053 -12.89517 -12.61766 -12.55979 -12.37906 -12.23453 -11.93947 -11.81266 -11.70343 -11.54507 -11.14089 -11.00526 -10.77209 -10.32773 -10.25927 -9.97490 -8.66002 -8.34402 -6.12116 -0.32331 1.08067 1.14454 1.27625 1.42647 1.44663 1.52926 1.56913 1.64146 1.78871 2.25231 2.29272 2.91711 3.00083 3.15575 3.27577 3.33240 3.56262 3.68308 3.81347 3.89652 3.97799 4.00335 4.06181 4.19721 4.32904 4.39508 4.53196 4.59015 4.66428 4.73307 4.79841 4.87213 4.98064 5.08756 5.36504 5.42527 5.43794 5.53794 6.01530 6.20141 6.46196 6.61765 7.06833 7.07291 7.21455 8.74573 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.002001 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.487458 B =13991.034984 C =14587.084532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.127 0.873 4 C 0.076 3.924 5 N -0.608 5.608 6 C 0.611 3.389 7 O -0.551 6.551 8 C -0.061 4.061 9 C 0.032 3.968 10 N -0.293 5.293 11 N -0.053 5.053 12 N -0.353 5.353 13 H 0.464 0.536 14 C 0.096 3.904 15 C 0.139 3.861 16 H 0.085 0.915 17 N -0.698 5.698 18 C 0.537 3.463 19 O -0.561 6.561 20 C -0.129 4.129 21 S -0.156 6.156 22 C -0.544 4.544 23 H 0.085 0.915 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.256 1.256 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.217 0.783 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.423 0.577 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 8.165 27.453 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.145 0.855 4 C -0.046 4.046 5 N -0.341 5.341 6 C 0.397 3.603 7 O -0.427 6.427 8 C -0.195 4.195 9 C -0.128 4.128 10 N -0.157 5.157 11 N -0.035 5.035 12 N -0.087 5.087 13 H 0.319 0.681 14 C -0.028 4.028 15 C 0.033 3.967 16 H 0.103 0.897 17 N -0.352 5.352 18 C 0.323 3.677 19 O -0.438 6.438 20 C -0.280 4.280 21 S 0.071 5.929 22 C -0.692 4.692 23 H 0.103 0.897 24 C -0.193 4.193 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.180 1.180 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.234 0.766 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.261 0.739 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.859 5.709 28.327 29.302 hybrid contribution 0.421 2.037 -2.343 3.134 sum -4.438 7.746 25.984 27.474 Atomic orbital electron populations 1.21847 0.91495 1.03032 1.04023 1.22471 0.98065 1.00347 0.89655 0.85493 1.22810 0.86946 0.95695 0.99173 1.48183 1.30592 1.44053 1.11311 1.16500 0.81434 0.78977 0.83371 1.90909 1.33559 1.45815 1.72424 1.21970 0.96484 1.06982 0.94099 1.24265 1.01847 0.99739 0.86933 1.75032 1.03442 1.13329 1.23906 1.78167 1.14927 1.11251 0.99162 1.46119 1.22119 1.34270 1.06206 0.68086 1.22666 0.98981 1.01364 0.79817 1.22083 0.94546 0.94688 0.85416 0.89696 1.45484 1.75014 1.11047 1.03701 1.20111 0.74750 0.88102 0.84706 1.90731 1.49831 1.16955 1.86329 1.23368 1.06968 1.02175 0.95519 1.85653 1.96078 1.13614 0.97523 1.23202 1.57985 0.94277 0.93695 0.89700 1.26132 0.93957 0.98717 1.00507 1.70186 1.47923 1.18490 1.18232 0.84962 0.78768 0.77778 0.76535 1.19477 1.20510 1.17971 0.92488 0.88905 0.91936 0.88606 0.87246 0.76598 0.92766 0.89332 0.73862 0.86736 0.87013 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.16 71.98 0.66 0.08 16 2 C -0.09 -0.43 3.17 -9.60 -0.03 -0.46 16 3 H 0.13 0.05 8.00 -2.39 -0.02 0.03 16 4 C 0.08 0.34 4.74 86.73 0.41 0.75 16 5 N -0.61 -8.96 3.33 -815.86 -2.71 -11.68 16 6 C 0.61 12.09 7.83 86.61 0.68 12.77 16 7 O -0.55 -16.02 17.16 -4.08 -0.07 -16.09 16 8 C -0.06 -0.93 6.98 40.41 0.28 -0.65 16 9 C 0.03 0.55 11.87 84.18 1.00 1.55 16 10 N -0.29 -5.64 12.35 -57.50 -0.71 -6.35 16 11 N -0.05 -0.84 13.35 37.02 0.49 -0.35 16 12 N -0.35 -3.58 6.60 -48.52 -0.32 -3.90 16 13 H 0.46 1.02 5.18 -219.89 -1.14 -0.12 16 14 C 0.10 1.86 6.63 86.85 0.58 2.44 16 15 C 0.14 2.24 2.76 46.38 0.13 2.37 16 16 H 0.08 1.85 7.64 -2.38 -0.02 1.83 16 17 N -0.70 -12.95 5.23 -435.96 -2.28 -15.23 16 18 C 0.54 17.29 7.85 87.66 0.69 17.98 16 19 O -0.56 -24.08 15.61 -3.04 -0.05 -24.12 16 20 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 21 S -0.16 -8.34 20.57 -56.49 -1.16 -9.50 16 22 C -0.54 -30.07 9.50 67.95 0.65 -29.43 16 23 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 24 C 0.01 0.64 5.49 84.86 0.47 1.11 16 25 N -0.91 -55.36 13.22 21.65 0.29 -55.08 16 26 Si 1.00 42.64 29.55 68.60 2.03 44.66 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 30 H 0.06 0.33 8.06 -2.39 -0.02 0.31 16 31 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.11 6.90 -2.39 -0.02 0.10 16 34 H 0.11 -0.17 7.15 -2.39 -0.02 -0.19 16 35 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 37 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.42 4.44 8.51 -92.71 -0.79 3.65 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -87.06 364.73 0.61 -86.45 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -0.83 Total: 6.86 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.94 Total: 4.33 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -5.24 Total: -92.59 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.12 Total: -40.21 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -87.06 0.61 -86.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587165098.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.295 kcal (2) G-P(sol) polarization free energy of solvation -87.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds