Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48502 * 109.47182 * 268.17800 * 3 2 1 5 5 H 1.48498 * 109.47091 * 28.17479 * 3 2 1 6 6 H 1.48502 * 109.47059 * 148.17682 * 3 2 1 7 7 C 1.40058 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99902 * 357.11010 * 7 2 1 9 9 C 1.46370 * 119.99889 * 177.10587 * 7 2 1 10 10 O 1.21693 * 119.99867 * 333.24165 * 9 7 2 11 11 N 1.34776 * 120.00023 * 153.24473 * 9 7 2 12 12 C 1.46960 * 120.59433 * 175.47045 * 11 9 7 13 13 C 1.53367 * 108.63519 * 235.24409 * 12 11 9 14 14 N 1.46962 * 108.63802 * 310.57579 * 13 12 11 15 15 C 1.34773 * 120.59888 * 235.19878 * 14 13 12 16 16 O 1.21621 * 119.99496 * 5.02145 * 15 14 13 17 17 C 1.47312 * 120.00111 * 185.01269 * 15 14 13 18 18 C 1.39856 * 120.17012 * 50.78105 * 17 15 14 19 19 C 1.37790 * 119.92366 * 180.29239 * 18 17 15 20 20 F 1.35100 * 119.85789 * 180.02562 * 19 18 17 21 21 C 1.39072 * 120.27905 * 359.97416 * 19 18 17 22 22 F 1.35093 * 119.82556 * 179.97438 * 21 19 18 23 23 C 1.38227 * 120.34923 * 0.02562 * 21 19 18 24 24 C 1.38818 * 120.07298 * 0.02562 * 23 21 19 25 25 N 1.38993 * 120.13959 * 179.97438 * 24 23 21 26 26 C 1.46968 * 118.80917 * 55.47721 * 14 13 12 27 27 C 1.46964 * 120.59030 * 355.49257 * 11 9 7 28 28 H 0.96998 * 120.00231 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.61035 * 115.50365 * 12 11 9 30 30 H 1.09007 * 109.75379 * 355.07455 * 12 11 9 31 31 H 1.08999 * 109.61234 * 190.83206 * 13 12 11 32 32 H 1.09002 * 109.60899 * 70.32412 * 13 12 11 33 33 H 1.07995 * 120.03803 * 0.25350 * 18 17 15 34 34 H 1.08006 * 119.95977 * 179.97438 * 23 21 19 35 35 H 0.97008 * 119.99965 * 185.42279 * 25 24 23 36 36 H 0.96997 * 120.00474 * 5.42347 * 25 24 23 37 37 H 1.09007 * 109.61165 * 64.26522 * 26 14 13 38 38 H 1.09003 * 109.61094 * 184.77418 * 26 14 13 39 39 H 1.09008 * 109.60637 * 244.49248 * 27 11 9 40 40 H 1.08999 * 109.61196 * 5.00657 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5268 2.0241 -1.3994 5 1 1.4194 2.6635 0.6611 6 1 3.5184 1.4515 0.7383 7 6 2.0070 -1.2129 -0.0005 8 1 1.4680 -2.1476 0.0462 9 6 3.4693 -1.2137 -0.0645 10 8 4.0559 -0.2850 -0.5884 11 7 4.1661 -2.2429 0.4566 12 6 5.6273 -2.3060 0.3126 13 6 5.9983 -3.6446 -0.3376 14 7 5.3105 -4.7241 0.3845 15 6 6.0071 -5.7538 0.9048 16 8 7.2225 -5.7504 0.8592 17 6 5.2965 -6.8832 1.5290 18 6 4.2583 -7.5244 0.8456 19 6 3.5930 -8.5764 1.4367 20 9 2.5907 -9.1951 0.7751 21 6 3.9498 -9.0046 2.7108 22 9 3.2911 -10.0366 3.2818 23 6 4.9742 -8.3792 3.3965 24 6 5.6535 -7.3172 2.8153 25 7 6.6834 -6.6869 3.5037 26 6 3.8487 -4.6639 0.5236 27 6 3.4782 -3.3224 1.1786 28 1 -0.4850 0.8400 0.0004 29 1 6.0951 -2.2343 1.2946 30 1 5.9712 -1.4855 -0.3172 31 1 7.0764 -3.7938 -0.2782 32 1 5.6836 -3.6440 -1.3812 33 1 3.9779 -7.1949 -0.1439 34 1 5.2458 -8.7166 4.3859 35 1 7.1040 -5.8966 3.1302 36 1 6.9816 -7.0373 4.3576 37 1 3.3843 -4.7341 -0.4602 38 1 3.5067 -5.4864 1.1518 39 1 3.7930 -3.3230 2.2222 40 1 2.4001 -3.1732 1.1192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588261569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = -123.963682 kcal Electronic energy + Delta-G solvation = -29642.568633 eV Core-core repulsion = 25093.362769 eV Total energy + Delta-G solvation = -4549.205864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.65662 -48.67864 -40.84143 -39.04648 -38.06258 -36.34398 -34.76070 -33.36569 -32.92142 -31.90470 -30.69000 -28.90804 -27.69045 -26.37328 -24.37830 -23.68036 -22.87236 -22.06727 -20.34491 -18.99118 -18.36005 -18.28331 -17.78497 -16.95614 -16.58789 -16.40354 -16.23565 -15.89280 -15.72791 -15.35477 -15.13118 -15.06547 -14.86930 -14.51093 -14.38996 -14.15943 -14.07241 -13.49159 -13.25734 -13.20224 -12.84262 -12.56256 -12.39452 -12.27314 -11.89311 -11.87607 -11.30166 -11.20557 -11.12958 -10.87786 -10.66167 -10.46764 -10.04407 -9.60818 -9.32221 -9.08488 -8.95203 -8.09484 -7.99564 -7.63013 -6.68069 -4.89613 0.38296 0.84555 2.38620 2.79479 3.14100 3.22950 3.36929 3.40588 3.63099 3.64734 4.03647 4.06912 4.08302 4.17644 4.30356 4.41786 4.72427 5.03034 5.04267 5.11214 5.19854 5.24484 5.36580 5.39203 5.46094 5.47025 5.58614 5.65384 5.70691 5.85908 6.10270 6.16888 6.28273 6.30643 6.46926 6.89334 6.92530 7.20640 7.33708 7.47986 7.76479 7.97177 8.21095 8.60775 9.00754 9.87649 10.33596 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003201 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.497118 B = 8746.003868 C = 9765.413215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.104 3.896 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.315 1.315 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.559 3.441 10 O -0.610 6.610 11 N -0.632 5.632 12 C 0.105 3.895 13 C 0.097 3.903 14 N -0.595 5.595 15 C 0.568 3.432 16 O -0.544 6.544 17 C -0.195 4.195 18 C -0.042 4.042 19 C 0.001 3.999 20 F -0.130 7.130 21 C 0.141 3.859 22 F -0.124 7.124 23 C -0.217 4.217 24 C 0.288 3.712 25 N -0.849 5.849 26 C 0.082 3.918 27 C 0.109 3.891 28 H 0.282 0.718 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.412 0.588 36 H 0.404 0.596 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -16.814 7.525 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.114 4.114 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.246 1.246 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.110 0.890 9 C 0.367 3.633 10 O -0.500 6.500 11 N -0.367 5.367 12 C -0.020 4.020 13 C -0.026 4.026 14 N -0.327 5.327 15 C 0.356 3.644 16 O -0.423 6.423 17 C -0.204 4.204 18 C -0.062 4.062 19 C -0.021 4.021 20 F -0.109 7.109 21 C 0.120 3.880 22 F -0.102 7.102 23 C -0.241 4.241 24 C 0.177 3.823 25 N -0.386 5.386 26 C -0.042 4.042 27 C -0.016 4.016 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.244 0.756 36 H 0.233 0.767 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.671 -16.299 7.207 20.276 hybrid contribution 0.069 0.346 0.182 0.397 sum 9.740 -15.953 7.389 20.099 Atomic orbital electron populations 1.69524 1.07738 1.29901 1.38982 1.25653 0.94736 1.01575 0.89408 0.85515 0.78500 0.78173 0.79562 1.20195 1.24571 1.18563 1.20674 0.87859 0.95541 1.53178 0.89004 1.18452 0.88718 0.79320 0.76791 1.90313 1.72006 1.36489 1.51163 1.47823 1.04851 1.24989 1.59005 1.21620 0.83530 0.96457 1.00367 1.22161 0.98417 0.86252 0.95730 1.48068 1.08316 1.22058 1.54250 1.17920 0.86752 0.81682 0.78041 1.90782 1.13089 1.79552 1.58899 1.19124 1.02852 1.02786 0.95608 1.20957 0.92205 0.92603 1.00390 1.17100 0.94110 0.99097 0.91760 1.91531 1.57787 1.81643 1.79961 1.17462 0.92925 0.86956 0.90672 1.91543 1.79193 1.55269 1.84228 1.20291 1.00268 1.00747 1.02822 1.17188 0.86813 0.89379 0.88955 1.42540 1.37683 1.33579 1.24827 1.22634 0.79068 0.99905 1.02557 1.21938 1.00596 0.84781 0.94280 0.90775 0.92883 0.88307 0.88483 0.90825 0.83029 0.83275 0.75618 0.76683 0.90257 0.88954 0.92819 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.69 13.92 55.55 0.77 -21.92 16 2 C 0.10 2.82 5.52 -17.36 -0.10 2.73 16 3 Si 0.95 24.12 26.11 -169.99 -4.44 19.68 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.32 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.26 -6.93 6.51 56.52 0.37 -6.56 16 7 C -0.54 -14.13 9.01 -35.63 -0.32 -14.45 16 8 H 0.09 2.38 6.54 -52.49 -0.34 2.04 16 9 C 0.56 13.89 7.08 -12.99 -0.09 13.79 16 10 O -0.61 -16.75 12.19 5.20 0.06 -16.68 16 11 N -0.63 -12.41 2.95 -173.87 -0.51 -12.92 16 12 C 0.10 1.76 6.58 -3.60 -0.02 1.73 16 13 C 0.10 1.37 6.60 -3.60 -0.02 1.35 16 14 N -0.60 -7.84 2.94 -173.52 -0.51 -8.36 16 15 C 0.57 7.36 6.55 -12.57 -0.08 7.28 16 16 O -0.54 -8.22 15.15 5.26 0.08 -8.14 16 17 C -0.20 -2.13 4.78 -104.80 -0.50 -2.64 16 18 C -0.04 -0.43 7.52 -39.14 -0.29 -0.72 16 19 C 0.00 0.02 7.29 -39.44 -0.29 -0.27 16 20 F -0.13 -1.56 17.17 2.25 0.04 -1.52 16 21 C 0.14 1.42 7.30 -39.28 -0.29 1.13 16 22 F -0.12 -1.33 17.17 2.25 0.04 -1.29 16 23 C -0.22 -1.83 9.85 -39.37 -0.39 -2.21 16 24 C 0.29 2.72 6.74 -83.60 -0.56 2.15 16 25 N -0.85 -6.63 8.89 32.55 0.29 -6.34 16 26 C 0.08 1.05 5.61 -3.36 -0.02 1.03 16 27 C 0.11 1.74 6.52 -3.37 -0.02 1.71 16 28 H 0.28 7.12 8.29 -40.82 -0.34 6.79 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.80 7.02 -51.93 -0.36 1.44 16 31 H 0.10 1.31 6.99 -51.93 -0.36 0.94 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.15 1.40 7.49 -52.49 -0.39 1.01 16 34 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.41 3.79 6.86 -40.82 -0.28 3.51 16 36 H 0.40 1.96 8.84 -40.82 -0.36 1.60 16 37 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.09 0.99 5.09 -51.93 -0.26 0.72 16 39 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.11 1.98 5.54 -51.93 -0.29 1.69 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -32.11 337.43 -6.03 -38.15 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.94 Total: 1.66 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -3.00 Total: 12.61 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.04 Total: -49.53 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.14 Total: -24.83 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.44 Total: 19.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.11 -6.03 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588261569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.819 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds