Wall clock time and date at job start Tue Mar 31 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39421 * 120.13767 * 2 1 4 4 C 1.47842 * 120.08448 * 0.25327 * 3 2 1 5 5 O 1.21573 * 119.99990 * 353.49996 * 4 3 2 6 6 N 1.34778 * 120.00001 * 173.49696 * 4 3 2 7 7 C 1.40519 * 120.00088 * 180.02562 * 6 4 3 8 8 C 1.40663 * 126.08740 * 0.02599 * 7 6 4 9 9 N 1.30902 * 108.38837 * 179.97438 * 8 7 6 10 10 N 1.40064 * 108.41195 * 0.02562 * 9 8 7 11 11 C 1.37319 * 126.06427 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99759 * 179.97438 * 11 10 9 13 13 C 1.38986 * 120.00396 * 359.96768 * 11 10 9 14 14 N 1.31295 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00257 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47098 * 60.00010 * 15 13 11 17 17 H 1.48496 * 109.47111 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47201 * 300.00252 * 15 13 11 19 19 C 1.35702 * 126.08658 * 179.71693 * 7 6 4 20 20 C 1.39624 * 119.82862 * 179.97438 * 3 2 1 21 21 C 1.38052 * 120.08649 * 359.97321 * 20 3 2 22 22 C 1.38129 * 120.27155 * 0.02562 * 21 20 3 23 23 C 1.39021 * 120.13592 * 179.97438 * 2 1 3 24 24 C 1.48483 * 120.04423 * 0.03937 * 23 2 1 25 25 N 1.34048 * 126.67197 * 359.68845 * 24 23 2 26 26 N 1.28986 * 107.26720 * 179.83314 * 25 24 23 27 27 N 1.28733 * 108.93974 * 0.43728 * 26 25 24 28 28 H 0.97005 * 125.33814 * 179.75777 * 27 26 25 29 29 N 1.28863 * 109.31832 * 359.72168 * 27 26 25 30 30 H 1.08993 * 109.47326 * 86.26804 * 1 2 3 31 31 H 1.08998 * 109.47144 * 206.27202 * 1 2 3 32 32 H 1.09003 * 109.46898 * 326.27172 * 1 2 3 33 33 H 0.97006 * 120.00075 * 0.02562 * 6 4 3 34 34 H 1.08001 * 125.80808 * 0.02562 * 8 7 6 35 35 H 0.96996 * 120.00641 * 180.02562 * 14 13 11 36 36 H 1.08004 * 126.24313 * 359.96874 * 19 7 6 37 37 H 1.07994 * 119.96089 * 179.97438 * 20 3 2 38 38 H 1.07999 * 119.86456 * 180.02562 * 21 20 3 39 39 H 1.07999 * 119.91450 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2057 0.0000 4 6 1.4728 2.4889 0.0057 5 8 0.2625 2.4973 -0.1089 6 7 2.1452 3.6495 0.1379 7 6 1.4473 4.8691 0.1438 8 6 0.0549 5.0276 0.0218 9 7 -0.2211 6.3062 0.0715 10 7 0.9788 7.0121 0.2260 11 6 1.1080 8.3760 0.3193 12 1 2.0859 8.8189 0.4377 13 6 -0.0196 9.1866 0.2613 14 7 -1.2084 8.6482 0.1177 15 14 0.1563 11.0420 0.3875 16 1 1.0101 11.5350 -0.7231 17 1 -1.1848 11.6734 0.2994 18 1 0.7836 11.3924 1.6871 19 6 1.9960 6.1034 0.2741 20 6 3.6032 1.1982 0.0005 21 6 4.2888 0.0000 0.0016 22 6 3.5992 -1.1968 0.0017 23 6 2.2049 -1.2023 0.0005 24 6 1.4666 -2.4905 0.0002 25 7 0.1357 -2.6505 0.0053 26 7 -0.0975 -3.9191 -0.0006 27 7 1.0245 -4.5502 0.0002 28 1 1.1256 -5.5149 -0.0001 29 7 1.9922 -3.6992 0.0007 30 1 -0.3633 0.0669 -1.0254 31 1 -0.3633 -0.9215 0.4549 32 1 -0.3633 0.8547 0.5706 33 1 3.1109 3.6429 0.2289 34 1 -0.6642 4.2300 -0.0925 35 1 -1.9953 9.2138 0.0768 36 1 3.0462 6.3261 0.3923 37 1 4.1476 2.1309 0.0001 38 1 5.3688 -0.0017 0.0025 39 1 4.1414 -2.1309 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591811953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:35 Heat of formation + Delta-G solvation = 217.741947 kcal Electronic energy + Delta-G solvation = -27413.157106 eV Core-core repulsion = 23361.750648 eV Total energy + Delta-G solvation = -4051.406459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.68934 -40.40069 -39.43029 -37.98994 -34.91646 -34.35397 -33.84100 -33.15248 -32.42672 -30.97392 -30.15403 -27.95710 -26.96086 -25.21369 -24.91047 -24.33220 -23.12504 -21.41309 -21.02353 -20.18414 -19.53084 -19.21443 -17.69886 -17.37970 -17.16813 -15.85678 -15.75597 -15.51610 -15.32169 -14.91420 -14.74480 -14.30428 -14.01691 -13.61084 -13.54996 -13.27082 -12.99103 -12.88037 -12.64609 -12.07670 -12.00273 -11.92800 -11.65892 -11.59744 -11.48703 -11.31031 -11.24298 -11.15374 -10.96281 -10.66667 -10.54084 -10.12854 -9.15725 -9.00131 -8.94358 -8.78462 -8.72635 -8.03852 -6.67319 -6.53975 -4.20792 0.42097 0.86500 1.04200 1.98090 2.05622 2.92263 3.05821 3.08336 3.10113 3.36717 3.58445 3.60356 3.87735 3.90056 4.00301 4.48966 4.64185 4.68843 4.78926 4.85916 5.03904 5.04145 5.06633 5.19997 5.32131 5.54491 5.70132 5.89555 6.08649 6.09983 6.15365 6.15858 6.25856 6.43380 6.54029 6.57392 6.81545 6.93601 6.98454 7.16679 7.27040 7.87385 7.93028 8.18776 8.29609 8.64916 8.86461 9.39426 9.69018 10.41895 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.002126 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.243165 B =13169.664814 C =14043.288578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.024 3.976 3 C -0.128 4.128 4 C 0.540 3.460 5 O -0.521 6.521 6 N -0.616 5.616 7 C -0.059 4.059 8 C -0.031 4.031 9 N -0.260 5.260 10 N -0.142 5.142 11 C -0.323 4.323 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.769 5.769 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.084 4.084 20 C -0.064 4.064 21 C -0.139 4.139 22 C -0.057 4.057 23 C -0.041 4.041 24 C 0.229 3.771 25 N -0.259 5.259 26 N -0.053 5.053 27 N -0.229 5.229 28 H 0.474 0.526 29 N -0.299 5.299 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.395 0.605 34 H 0.178 0.822 35 H 0.275 0.725 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 -21.652 0.225 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 C -0.131 4.131 4 C 0.327 3.673 5 O -0.399 6.399 6 N -0.259 5.259 7 C -0.165 4.165 8 C -0.206 4.206 9 N -0.091 5.091 10 N 0.091 4.909 11 C -0.455 4.455 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.758 3.242 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.235 4.235 20 C -0.084 4.084 21 C -0.157 4.157 22 C -0.078 4.078 23 C -0.044 4.044 24 C -0.050 4.050 25 N -0.131 5.131 26 N -0.048 5.048 27 N -0.074 5.074 28 H 0.328 0.672 29 N -0.151 5.151 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.229 0.771 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.637 -21.078 0.090 22.779 hybrid contribution 1.997 -0.230 0.083 2.012 sum 10.634 -21.308 0.172 23.815 Atomic orbital electron populations 1.21637 0.88649 1.05640 1.04282 1.20095 0.97789 0.89671 0.90396 1.19824 0.93384 0.93481 1.06420 1.17895 0.87224 0.82902 0.79286 1.90624 1.13432 1.86063 1.49811 1.42407 1.09323 1.04080 1.70044 1.17236 0.92258 0.83537 1.23476 1.24150 0.93499 0.95383 1.07579 1.78261 1.03591 1.02036 1.25258 1.44540 1.02886 1.04901 1.38614 1.19816 0.95865 0.77114 1.52731 0.86680 1.25640 0.94600 1.01357 0.95540 1.70203 0.98112 1.36399 1.34854 0.85900 0.78323 0.80498 0.79449 1.19173 1.20148 1.19177 1.21250 0.94159 0.88370 1.19735 1.21529 0.93068 0.98877 0.94895 1.20952 1.00335 0.91477 1.02917 1.21257 0.92117 0.99085 0.95336 1.17064 0.92019 0.86429 1.08926 1.23592 0.88222 0.92190 1.00995 1.76252 1.13700 1.05332 1.17853 1.78989 1.10871 1.00633 1.14314 1.47704 1.01240 1.12326 1.46166 0.67192 1.74881 1.17867 0.99614 1.22698 0.90298 0.89025 0.87827 0.77084 0.80557 0.91394 0.83720 0.85001 0.84732 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.17 36.01 0.29 -1.89 16 2 C 0.02 0.33 5.94 -103.89 -0.62 -0.29 16 3 C -0.13 -1.77 5.87 -105.01 -0.62 -2.39 16 4 C 0.54 9.54 7.67 -12.33 -0.09 9.45 16 5 O -0.52 -10.86 10.43 5.30 0.06 -10.81 16 6 N -0.62 -10.85 5.41 -10.85 -0.06 -10.91 16 7 C -0.06 -1.36 6.90 -83.86 -0.58 -1.94 16 8 C -0.03 -0.80 10.85 -17.03 -0.18 -0.99 16 9 N -0.26 -7.57 10.39 30.80 0.32 -7.25 16 10 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 11 C -0.32 -8.51 10.25 -14.82 -0.15 -8.67 16 12 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.53 11.81 55.49 0.66 -20.87 16 15 Si 0.93 18.90 29.55 -169.99 -5.02 13.87 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 19 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 20 C -0.06 -0.66 9.52 -39.13 -0.37 -1.03 16 21 C -0.14 -1.18 10.02 -39.69 -0.40 -1.58 16 22 C -0.06 -0.54 9.69 -39.18 -0.38 -0.92 16 23 C -0.04 -0.49 5.87 -104.94 -0.62 -1.10 16 24 C 0.23 2.70 7.79 -156.30 -1.22 1.48 16 25 N -0.26 -3.27 9.02 32.16 0.29 -2.98 16 26 N -0.05 -0.55 13.47 60.35 0.81 0.27 16 27 N -0.23 -1.62 7.90 60.35 0.48 -1.15 16 28 H 0.47 0.94 8.96 -340.37 -3.05 -2.11 16 29 N -0.30 -2.82 12.07 32.18 0.39 -2.44 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.31 4.86 -51.93 -0.25 1.06 16 32 H 0.10 1.77 5.63 -51.93 -0.29 1.47 16 33 H 0.40 5.29 6.89 -40.82 -0.28 5.01 16 34 H 0.18 4.56 5.92 -52.49 -0.31 4.25 16 35 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 37 H 0.13 1.05 6.44 -52.49 -0.34 0.71 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.00 7.87 -52.49 -0.41 0.58 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -35.36 337.62 -8.01 -43.37 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.75 Total: 8.62 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -5.22 Total: -10.90 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 2.84 Total: -49.25 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.06 Total: -10.81 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.36 -8.01 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591811953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.115 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 225.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds