Wall clock time and date at job start Tue Mar 31 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39421 * 120.13767 * 2 1 4 4 C 1.47842 * 120.08448 * 0.25327 * 3 2 1 5 5 O 1.21573 * 119.99990 * 353.49996 * 4 3 2 6 6 N 1.34778 * 120.00001 * 173.49696 * 4 3 2 7 7 C 1.40519 * 120.00088 * 180.02562 * 6 4 3 8 8 C 1.40663 * 126.08740 * 0.02599 * 7 6 4 9 9 N 1.30902 * 108.38837 * 179.97438 * 8 7 6 10 10 N 1.40064 * 108.41195 * 0.02562 * 9 8 7 11 11 C 1.37319 * 126.06427 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99759 * 179.97438 * 11 10 9 13 13 C 1.38986 * 120.00396 * 359.96768 * 11 10 9 14 14 N 1.31295 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00257 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47098 * 60.00010 * 15 13 11 17 17 H 1.48496 * 109.47111 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47201 * 300.00252 * 15 13 11 19 19 C 1.35702 * 126.08658 * 179.71693 * 7 6 4 20 20 C 1.39624 * 119.82862 * 179.97438 * 3 2 1 21 21 C 1.38052 * 120.08649 * 359.97321 * 20 3 2 22 22 C 1.38129 * 120.27155 * 0.02562 * 21 20 3 23 23 C 1.39021 * 120.13592 * 179.97438 * 2 1 3 24 24 C 1.48483 * 120.04423 * 0.03937 * 23 2 1 25 25 N 1.34048 * 126.67197 * 359.68845 * 24 23 2 26 26 N 1.28986 * 107.26720 * 179.83314 * 25 24 23 27 27 N 1.28733 * 108.93974 * 0.43728 * 26 25 24 28 28 H 0.97005 * 125.33814 * 179.75777 * 27 26 25 29 29 N 1.28863 * 109.31832 * 359.72168 * 27 26 25 30 30 H 1.08993 * 109.47326 * 86.26804 * 1 2 3 31 31 H 1.08998 * 109.47144 * 206.27202 * 1 2 3 32 32 H 1.09003 * 109.46898 * 326.27172 * 1 2 3 33 33 H 0.97006 * 120.00075 * 0.02562 * 6 4 3 34 34 H 1.08001 * 125.80808 * 0.02562 * 8 7 6 35 35 H 0.96996 * 120.00641 * 180.02562 * 14 13 11 36 36 H 1.08004 * 126.24313 * 359.96874 * 19 7 6 37 37 H 1.07994 * 119.96089 * 179.97438 * 20 3 2 38 38 H 1.07999 * 119.86456 * 180.02562 * 21 20 3 39 39 H 1.07999 * 119.91450 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2057 0.0000 4 6 1.4728 2.4889 0.0057 5 8 0.2625 2.4973 -0.1089 6 7 2.1452 3.6495 0.1379 7 6 1.4473 4.8691 0.1438 8 6 0.0549 5.0276 0.0218 9 7 -0.2211 6.3062 0.0715 10 7 0.9788 7.0121 0.2260 11 6 1.1080 8.3760 0.3193 12 1 2.0859 8.8189 0.4377 13 6 -0.0196 9.1866 0.2613 14 7 -1.2084 8.6482 0.1177 15 14 0.1563 11.0420 0.3875 16 1 1.0101 11.5350 -0.7231 17 1 -1.1848 11.6734 0.2994 18 1 0.7836 11.3924 1.6871 19 6 1.9960 6.1034 0.2741 20 6 3.6032 1.1982 0.0005 21 6 4.2888 0.0000 0.0016 22 6 3.5992 -1.1968 0.0017 23 6 2.2049 -1.2023 0.0005 24 6 1.4666 -2.4905 0.0002 25 7 0.1357 -2.6505 0.0053 26 7 -0.0975 -3.9191 -0.0006 27 7 1.0245 -4.5502 0.0002 28 1 1.1256 -5.5149 -0.0001 29 7 1.9922 -3.6992 0.0007 30 1 -0.3633 0.0669 -1.0254 31 1 -0.3633 -0.9215 0.4549 32 1 -0.3633 0.8547 0.5706 33 1 3.1109 3.6429 0.2289 34 1 -0.6642 4.2300 -0.0925 35 1 -1.9953 9.2138 0.0768 36 1 3.0462 6.3261 0.3923 37 1 4.1476 2.1309 0.0001 38 1 5.3688 -0.0017 0.0025 39 1 4.1414 -2.1309 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591811953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:34 Heat of formation + Delta-G solvation = 192.303615 kcal Electronic energy + Delta-G solvation = -27414.260195 eV Core-core repulsion = 23361.750648 eV Total energy + Delta-G solvation = -4052.509548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.47034 -41.84024 -40.96427 -39.29736 -36.11184 -35.60334 -35.05248 -34.56220 -33.41557 -32.31057 -31.76214 -29.59873 -28.16095 -26.78408 -25.98377 -25.18256 -24.33324 -22.83736 -22.31435 -21.57009 -21.12708 -20.13154 -19.27352 -18.52603 -18.15175 -17.39075 -17.04205 -16.70882 -16.54743 -16.27865 -15.96676 -15.72234 -15.21186 -15.12503 -14.81618 -14.69220 -14.36879 -14.24024 -13.60113 -13.45793 -13.28002 -13.11553 -12.96710 -12.85469 -12.75508 -12.73681 -12.40723 -12.29880 -12.12655 -11.97240 -11.79061 -11.68210 -10.97336 -10.78020 -10.34457 -10.07617 -9.91070 -9.62321 -8.47839 -8.44066 -6.20995 -0.40182 -0.04226 0.20516 1.18608 1.32976 1.41214 1.42979 1.57852 1.69942 1.96947 2.05411 2.28047 2.51707 2.64241 2.90004 2.93929 3.12408 3.17681 3.77615 3.84832 3.95451 4.09943 4.20329 4.38929 4.43989 4.49152 4.60621 4.75407 4.83117 4.86859 4.94000 5.03221 5.12259 5.30153 5.31113 5.34522 5.41948 5.51943 5.62228 5.66990 5.82879 5.98871 6.35185 6.76266 6.77734 7.13258 7.40995 7.50435 7.71771 8.55132 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.002126 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.243165 B =13169.664814 C =14043.288578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 C -0.147 4.147 4 C 0.537 3.463 5 O -0.561 6.561 6 N -0.609 5.609 7 C -0.042 4.042 8 C -0.059 4.059 9 N -0.311 5.311 10 N -0.169 5.169 11 C -0.353 4.353 12 H 0.142 0.858 13 C -0.009 4.009 14 N -0.826 5.826 15 Si 1.019 2.981 16 H -0.253 1.253 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.078 4.078 20 C -0.055 4.055 21 C -0.120 4.120 22 C -0.044 4.044 23 C -0.049 4.049 24 C 0.213 3.787 25 N -0.295 5.295 26 N -0.063 5.063 27 N -0.197 5.197 28 H 0.495 0.505 29 N -0.286 5.286 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.167 0.833 35 H 0.276 0.724 36 H 0.191 0.809 37 H 0.160 0.840 38 H 0.180 0.820 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.980 -22.856 0.477 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 C -0.151 4.151 4 C 0.327 3.673 5 O -0.441 6.441 6 N -0.254 5.254 7 C -0.149 4.149 8 C -0.235 4.235 9 N -0.143 5.143 10 N 0.062 4.938 11 C -0.484 4.484 12 H 0.160 0.840 13 C -0.220 4.220 14 N -0.454 5.454 15 Si 0.838 3.162 16 H -0.177 1.177 17 H -0.205 1.205 18 H -0.177 1.177 19 C -0.229 4.229 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.064 4.064 23 C -0.052 4.052 24 C -0.066 4.066 25 N -0.167 5.167 26 N -0.057 5.057 27 N -0.048 5.048 28 H 0.354 0.646 29 N -0.139 5.139 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.257 0.743 34 H 0.184 0.816 35 H 0.085 0.915 36 H 0.208 0.792 37 H 0.177 0.823 38 H 0.198 0.802 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.420 -22.345 0.345 26.068 hybrid contribution 0.646 -0.216 -0.002 0.681 sum 14.066 -22.562 0.343 26.590 Atomic orbital electron populations 1.21412 0.90617 1.04424 1.02754 1.20000 0.96797 0.90928 0.92393 1.19521 0.94912 0.90935 1.09714 1.18654 0.87037 0.84114 0.77492 1.90624 1.15624 1.86808 1.51052 1.42285 1.10330 1.02328 1.70430 1.17290 0.91136 0.85556 1.20887 1.24191 0.95471 0.94709 1.09102 1.78154 1.05838 1.03290 1.27036 1.44834 1.03114 1.05791 1.40016 1.20581 0.97398 0.77218 1.53235 0.84038 1.26900 0.93800 1.07037 0.94264 1.70400 0.99266 1.38572 1.37156 0.84651 0.78228 0.73052 0.80258 1.17655 1.20502 1.17670 1.22012 0.95545 0.87669 1.17654 1.21844 0.91190 1.01152 0.93259 1.21439 1.02345 0.89935 1.00060 1.21658 0.90854 1.00866 0.92992 1.17165 0.93227 0.85608 1.09194 1.23685 0.88081 0.92922 1.01945 1.76194 1.14737 1.06460 1.19272 1.78932 1.11655 1.00183 1.14953 1.47783 1.00191 1.13255 1.43564 0.64586 1.74827 1.17911 0.98995 1.22156 0.91994 0.88567 0.90814 0.74302 0.81602 0.91479 0.79202 0.82283 0.80244 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.17 71.24 0.58 -3.83 16 2 C 0.00 0.06 5.94 -19.39 -0.12 -0.06 16 3 C -0.15 -3.97 5.87 -20.12 -0.12 -4.09 16 4 C 0.54 19.40 7.67 86.79 0.67 20.06 16 5 O -0.56 -25.09 10.43 -3.95 -0.04 -25.14 16 6 N -0.61 -20.95 5.41 -306.52 -1.66 -22.61 16 7 C -0.04 -1.96 6.90 37.75 0.26 -1.70 16 8 C -0.06 -3.30 10.85 85.42 0.93 -2.37 16 9 N -0.31 -19.05 10.39 -56.46 -0.59 -19.64 16 10 N -0.17 -9.40 3.74 -190.00 -0.71 -10.11 16 11 C -0.35 -18.74 10.25 84.01 0.86 -17.88 16 12 H 0.14 6.43 7.83 -2.91 -0.02 6.40 16 13 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 14 N -0.83 -48.38 11.81 21.66 0.26 -48.13 16 15 Si 1.02 38.83 29.55 68.60 2.03 40.85 16 16 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 17 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 18 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 19 C -0.08 -3.60 11.49 83.38 0.96 -2.64 16 20 C -0.06 -0.93 9.52 22.56 0.21 -0.71 16 21 C -0.12 -1.40 10.02 22.20 0.22 -1.18 16 22 C -0.04 -0.64 9.69 22.53 0.22 -0.42 16 23 C -0.05 -1.08 5.87 -20.07 -0.12 -1.19 16 24 C 0.21 4.77 7.79 137.39 1.07 5.84 16 25 N -0.30 -7.50 9.02 -52.17 -0.47 -7.97 16 26 N -0.06 -1.24 13.47 37.02 0.50 -0.75 16 27 N -0.20 -2.39 7.90 37.02 0.29 -2.09 16 28 H 0.49 0.66 8.96 -347.53 -3.12 -2.45 16 29 N -0.29 -4.70 12.07 -52.12 -0.63 -5.33 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 2.98 4.86 -2.39 -0.01 2.97 16 32 H 0.07 2.81 5.63 -2.39 -0.01 2.79 16 33 H 0.42 10.04 6.89 -92.70 -0.64 9.40 16 34 H 0.17 9.36 5.92 -2.91 -0.02 9.34 16 35 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.19 6.69 8.06 -2.91 -0.02 6.67 16 37 H 0.16 1.74 6.44 -2.91 -0.02 1.72 16 38 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.16 1.52 7.87 -2.91 -0.02 1.49 16 Total: -1.00 -84.80 337.62 2.50 -82.31 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -2.58 Total: 28.75 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 6.10 Total: -10.14 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -3.01 Total: -116.63 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -84.80 2.50 -82.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591811953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.610 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds