Wall clock time and date at job start Tue Mar 31 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38050 * 119.95445 * 2 1 4 4 C 1.38131 * 120.27376 * 179.74717 * 3 2 1 5 5 C 1.39428 * 120.17083 * 0.25529 * 4 3 2 6 6 C 1.48481 * 120.04247 * 179.97438 * 5 4 3 7 7 N 1.34045 * 126.67101 * 179.68841 * 6 5 4 8 8 N 1.28989 * 107.26482 * 179.86713 * 7 6 5 9 9 N 1.28724 * 108.94391 * 0.39461 * 8 7 6 10 10 H 0.97003 * 125.34321 * 179.76377 * 9 8 7 11 11 N 1.28877 * 109.31996 * 359.74912 * 9 8 7 12 12 C 1.39013 * 119.90989 * 359.97438 * 5 4 3 13 13 C 1.39424 * 119.73475 * 0.02562 * 12 5 4 14 14 C 1.47842 * 120.08826 * 180.02562 * 13 12 5 15 15 O 1.21579 * 119.99412 * 186.18492 * 14 13 12 16 16 N 1.34778 * 120.00259 * 6.18573 * 14 13 12 17 17 C 1.40519 * 120.00097 * 180.02562 * 16 14 13 18 18 C 1.40667 * 126.08254 * 0.02562 * 17 16 14 19 19 N 1.30908 * 108.38559 * 179.97438 * 18 17 16 20 20 N 1.40072 * 108.41194 * 0.02562 * 19 18 17 21 21 C 1.37314 * 126.06787 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00255 * 179.97438 * 21 20 19 23 23 C 1.38989 * 120.00037 * 359.97438 * 21 20 19 24 24 N 1.31297 * 120.00027 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00211 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46927 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47121 * 119.99947 * 25 23 21 28 28 H 1.48498 * 109.47259 * 240.00074 * 25 23 21 29 29 C 1.35697 * 126.08846 * 179.71053 * 17 16 14 30 30 H 1.08997 * 109.47145 * 96.84727 * 1 2 3 31 31 H 1.09001 * 109.46883 * 216.84628 * 1 2 3 32 32 H 1.08997 * 109.47123 * 336.84338 * 1 2 3 33 33 H 1.08001 * 119.86566 * 0.02562 * 3 2 1 34 34 H 1.07990 * 119.91417 * 180.23007 * 4 3 2 35 35 H 1.08007 * 120.13516 * 179.97438 * 12 5 4 36 36 H 0.97005 * 119.99638 * 359.97438 * 16 14 13 37 37 H 1.07999 * 125.81117 * 0.02562 * 18 17 16 38 38 H 0.97002 * 119.99907 * 180.02562 * 24 23 21 39 39 H 1.08010 * 126.24315 * 359.97201 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1961 0.0000 4 6 3.5776 1.2038 0.0053 5 6 4.2851 0.0023 0.0052 6 6 5.7698 0.0139 0.0103 7 7 6.5787 -1.0549 0.0168 8 7 7.7919 -0.6168 0.0166 9 7 7.7715 0.6702 0.0188 10 1 8.5538 1.2439 0.0224 11 7 6.5487 1.0773 0.0150 12 6 3.5984 -1.2064 0.0005 13 6 2.2042 -1.2097 -0.0049 14 6 1.4661 -2.4906 -0.0094 15 8 0.2560 -2.4944 -0.1275 16 7 2.1345 -3.6541 0.1173 17 6 1.4329 -4.8716 0.1125 18 6 0.0406 -5.0249 -0.0166 19 7 -0.2394 -6.3031 0.0227 20 7 0.9576 -7.0137 0.1783 21 6 1.0825 -8.3786 0.2618 22 1 2.0586 -8.8253 0.3813 23 6 -0.0471 -9.1854 0.1923 24 7 -1.2336 -8.6425 0.0464 25 14 0.1229 -11.0422 0.3050 26 1 1.5554 -11.3993 0.4651 27 1 -0.6445 -11.5394 1.4752 28 1 -0.4072 -11.6640 -0.9349 29 6 1.9785 -6.1089 0.2254 30 1 -0.3633 -0.1225 -1.0203 31 1 -0.3633 -0.8224 0.6163 32 1 -0.3633 0.9448 0.4041 33 1 1.6534 2.1297 0.0004 34 1 4.1109 2.1428 0.0090 35 1 4.1428 -2.1392 0.0000 36 1 3.1000 -3.6510 0.2112 37 1 -0.6755 -4.2245 -0.1298 38 1 -2.0220 -9.2055 -0.0017 39 1 3.0287 -6.3362 0.3348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592100479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:38 Heat of formation + Delta-G solvation = 206.042154 kcal Electronic energy + Delta-G solvation = -27319.433685 eV Core-core repulsion = 23267.519885 eV Total energy + Delta-G solvation = -4051.913800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72763 -40.40182 -39.41610 -37.98992 -34.89983 -34.40299 -33.96173 -33.24517 -31.86608 -31.42347 -30.15690 -28.02185 -27.23082 -25.19703 -24.82918 -23.81742 -23.41306 -21.73685 -20.99522 -20.18224 -19.45996 -19.31295 -17.74901 -17.41465 -17.14737 -15.77179 -15.71073 -15.46731 -15.26700 -14.92121 -14.76108 -14.27406 -13.97064 -13.73803 -13.54779 -13.37205 -12.94963 -12.88969 -12.60906 -12.50503 -12.05298 -11.89108 -11.65687 -11.62722 -11.46443 -11.34247 -11.33575 -11.25415 -10.99205 -10.86651 -10.48559 -10.14114 -9.19937 -9.13959 -9.03676 -8.77810 -8.68857 -8.02839 -6.65853 -6.53398 -4.19558 0.43135 0.81883 0.95746 1.94048 2.04313 2.90897 3.06926 3.07466 3.13367 3.37077 3.57076 3.59249 3.87808 3.88744 3.94007 4.49581 4.63102 4.63797 4.75001 4.83836 5.03053 5.05047 5.09979 5.23057 5.27464 5.50831 5.60987 5.74584 5.91623 5.97087 6.09088 6.11570 6.21270 6.30234 6.48416 6.49029 6.68633 6.94502 6.98865 7.15738 7.26966 7.86421 7.88901 8.19176 8.30562 8.64954 8.85880 9.40700 9.69960 10.42675 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002490 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.506358 B =11241.568279 C =13078.246180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.001 4.001 3 C -0.134 4.134 4 C -0.057 4.057 5 C -0.039 4.039 6 C 0.226 3.774 7 N -0.266 5.266 8 N -0.047 5.047 9 N -0.229 5.229 10 H 0.475 0.525 11 N -0.297 5.297 12 C -0.042 4.042 13 C -0.125 4.125 14 C 0.540 3.460 15 O -0.526 6.526 16 N -0.615 5.615 17 C -0.059 4.059 18 C -0.031 4.031 19 N -0.261 5.261 20 N -0.143 5.143 21 C -0.322 4.322 22 H 0.117 0.883 23 C 0.046 3.954 24 N -0.770 5.770 25 Si 0.934 3.066 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.274 1.274 29 C -0.082 4.082 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.397 0.603 37 H 0.177 0.823 38 H 0.274 0.726 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.023 20.091 0.316 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.003 4.003 3 C -0.152 4.152 4 C -0.078 4.078 5 C -0.042 4.042 6 C -0.054 4.054 7 N -0.139 5.139 8 N -0.043 5.043 9 N -0.075 5.075 10 H 0.329 0.671 11 N -0.149 5.149 12 C -0.063 4.063 13 C -0.128 4.128 14 C 0.327 3.673 15 O -0.404 6.404 16 N -0.257 5.257 17 C -0.165 4.165 18 C -0.206 4.206 19 N -0.092 5.092 20 N 0.090 4.910 21 C -0.454 4.454 22 H 0.134 0.866 23 C -0.171 4.171 24 N -0.397 5.397 25 Si 0.758 3.242 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.233 4.233 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.231 0.769 37 H 0.194 0.806 38 H 0.085 0.915 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.607 18.825 0.176 22.657 hybrid contribution 1.702 0.432 0.104 1.759 sum 14.309 19.257 0.281 23.993 Atomic orbital electron populations 1.21173 0.89437 1.03257 1.04280 1.20269 0.97438 0.91227 0.91383 1.20975 0.93391 0.97891 1.02910 1.21251 0.94155 0.96994 0.95377 1.17016 0.84280 0.94478 1.08438 1.23659 0.96345 0.84287 1.01094 1.76134 0.94544 1.25577 1.17669 1.78943 1.17148 0.93650 1.14516 1.47726 1.07562 1.06013 1.46210 0.67092 1.74900 0.90709 1.26796 1.22506 1.21330 0.93043 0.97616 0.94284 1.19837 0.92650 0.94124 1.06228 1.17878 0.87192 0.82876 0.79312 1.90624 1.13386 1.86230 1.50208 1.42448 1.09544 1.04078 1.69617 1.17240 0.92195 0.83539 1.23516 1.24131 0.93439 0.95406 1.07663 1.78253 1.03832 1.01878 1.25209 1.44550 1.02841 1.04930 1.38679 1.19921 0.95979 0.77015 1.52479 0.86564 1.25643 0.94604 1.01362 0.95522 1.70229 0.98115 1.36175 1.35131 0.85769 0.79278 0.80667 0.78462 1.18680 1.19937 1.19932 1.21287 0.94123 0.88381 1.19511 0.90115 0.87879 0.92454 0.84616 0.84742 0.84299 0.76868 0.80594 0.91543 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.70 36.01 0.31 -1.20 16 2 C 0.00 -0.02 5.92 -104.17 -0.62 -0.63 16 3 C -0.13 -1.25 9.64 -39.69 -0.38 -1.64 16 4 C -0.06 -0.53 9.69 -39.18 -0.38 -0.91 16 5 C -0.04 -0.43 5.87 -104.94 -0.62 -1.04 16 6 C 0.23 2.50 7.93 -156.30 -1.24 1.26 16 7 N -0.27 -3.20 12.23 32.16 0.39 -2.81 16 8 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 9 N -0.23 -1.55 7.90 60.35 0.48 -1.08 16 10 H 0.47 0.82 8.96 -340.37 -3.05 -2.23 16 11 N -0.30 -2.70 12.07 32.18 0.39 -2.31 16 12 C -0.04 -0.50 9.18 -38.85 -0.36 -0.86 16 13 C -0.12 -1.72 5.87 -105.01 -0.62 -2.34 16 14 C 0.54 9.52 7.67 -12.33 -0.09 9.43 16 15 O -0.53 -10.63 10.49 5.30 0.06 -10.58 16 16 N -0.62 -11.19 5.41 -10.85 -0.06 -11.25 16 17 C -0.06 -1.37 6.90 -83.87 -0.58 -1.95 16 18 C -0.03 -0.80 10.85 -17.03 -0.18 -0.99 16 19 N -0.26 -7.58 10.40 30.80 0.32 -7.26 16 20 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 21 C -0.32 -8.56 10.25 -14.82 -0.15 -8.71 16 22 H 0.12 2.78 7.83 -52.48 -0.41 2.37 16 23 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 24 N -0.77 -21.58 11.81 55.50 0.66 -20.93 16 25 Si 0.93 19.05 29.55 -169.99 -5.02 14.03 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 29 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.52 5.88 -51.93 -0.31 1.22 16 32 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 33 H 0.14 0.91 8.05 -52.49 -0.42 0.48 16 34 H 0.13 0.99 7.87 -52.49 -0.41 0.57 16 35 H 0.14 1.59 6.27 -52.48 -0.33 1.26 16 36 H 0.40 5.86 6.89 -40.82 -0.28 5.58 16 37 H 0.18 4.49 5.92 -52.49 -0.31 4.18 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 39 H 0.15 2.91 8.06 -52.48 -0.42 2.49 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -35.02 344.06 -7.95 -42.96 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.92 Total: 8.30 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.19 Total: -10.63 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 2.95 Total: -49.27 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.06 Total: -10.58 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.02 -7.95 -42.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592100479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.006 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds