Wall clock time and date at job start Tue Mar 31 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38050 * 119.95445 * 2 1 4 4 C 1.38131 * 120.27376 * 179.74717 * 3 2 1 5 5 C 1.39428 * 120.17083 * 0.25529 * 4 3 2 6 6 C 1.48481 * 120.04247 * 179.97438 * 5 4 3 7 7 N 1.34045 * 126.67101 * 179.68841 * 6 5 4 8 8 N 1.28989 * 107.26482 * 179.86713 * 7 6 5 9 9 N 1.28724 * 108.94391 * 0.39461 * 8 7 6 10 10 H 0.97003 * 125.34321 * 179.76377 * 9 8 7 11 11 N 1.28877 * 109.31996 * 359.74912 * 9 8 7 12 12 C 1.39013 * 119.90989 * 359.97438 * 5 4 3 13 13 C 1.39424 * 119.73475 * 0.02562 * 12 5 4 14 14 C 1.47842 * 120.08826 * 180.02562 * 13 12 5 15 15 O 1.21579 * 119.99412 * 186.18492 * 14 13 12 16 16 N 1.34778 * 120.00259 * 6.18573 * 14 13 12 17 17 C 1.40519 * 120.00097 * 180.02562 * 16 14 13 18 18 C 1.40667 * 126.08254 * 0.02562 * 17 16 14 19 19 N 1.30908 * 108.38559 * 179.97438 * 18 17 16 20 20 N 1.40072 * 108.41194 * 0.02562 * 19 18 17 21 21 C 1.37314 * 126.06787 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00255 * 179.97438 * 21 20 19 23 23 C 1.38989 * 120.00037 * 359.97438 * 21 20 19 24 24 N 1.31297 * 120.00027 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00211 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46927 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47121 * 119.99947 * 25 23 21 28 28 H 1.48498 * 109.47259 * 240.00074 * 25 23 21 29 29 C 1.35697 * 126.08846 * 179.71053 * 17 16 14 30 30 H 1.08997 * 109.47145 * 96.84727 * 1 2 3 31 31 H 1.09001 * 109.46883 * 216.84628 * 1 2 3 32 32 H 1.08997 * 109.47123 * 336.84338 * 1 2 3 33 33 H 1.08001 * 119.86566 * 0.02562 * 3 2 1 34 34 H 1.07990 * 119.91417 * 180.23007 * 4 3 2 35 35 H 1.08007 * 120.13516 * 179.97438 * 12 5 4 36 36 H 0.97005 * 119.99638 * 359.97438 * 16 14 13 37 37 H 1.07999 * 125.81117 * 0.02562 * 18 17 16 38 38 H 0.97002 * 119.99907 * 180.02562 * 24 23 21 39 39 H 1.08010 * 126.24315 * 359.97201 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1961 0.0000 4 6 3.5776 1.2038 0.0053 5 6 4.2851 0.0023 0.0052 6 6 5.7698 0.0139 0.0103 7 7 6.5787 -1.0549 0.0168 8 7 7.7919 -0.6168 0.0166 9 7 7.7715 0.6702 0.0188 10 1 8.5538 1.2439 0.0224 11 7 6.5487 1.0773 0.0150 12 6 3.5984 -1.2064 0.0005 13 6 2.2042 -1.2097 -0.0049 14 6 1.4661 -2.4906 -0.0094 15 8 0.2560 -2.4944 -0.1275 16 7 2.1345 -3.6541 0.1173 17 6 1.4329 -4.8716 0.1125 18 6 0.0406 -5.0249 -0.0166 19 7 -0.2394 -6.3031 0.0227 20 7 0.9576 -7.0137 0.1783 21 6 1.0825 -8.3786 0.2618 22 1 2.0586 -8.8253 0.3813 23 6 -0.0471 -9.1854 0.1923 24 7 -1.2336 -8.6425 0.0464 25 14 0.1229 -11.0422 0.3050 26 1 1.5554 -11.3993 0.4651 27 1 -0.6445 -11.5394 1.4752 28 1 -0.4072 -11.6640 -0.9349 29 6 1.9785 -6.1089 0.2254 30 1 -0.3633 -0.1225 -1.0203 31 1 -0.3633 -0.8224 0.6163 32 1 -0.3633 0.9448 0.4041 33 1 1.6534 2.1297 0.0004 34 1 4.1109 2.1428 0.0090 35 1 4.1428 -2.1392 0.0000 36 1 3.1000 -3.6510 0.2112 37 1 -0.6755 -4.2245 -0.1298 38 1 -2.0220 -9.2055 -0.0017 39 1 3.0287 -6.3362 0.3348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592100479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:37 Heat of formation + Delta-G solvation = 181.243863 kcal Electronic energy + Delta-G solvation = -27320.509020 eV Core-core repulsion = 23267.519885 eV Total energy + Delta-G solvation = -4052.989135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.45528 -41.85389 -40.96882 -39.29707 -36.13416 -35.50558 -35.06317 -34.83136 -32.76403 -32.55452 -32.02990 -29.61209 -28.37510 -26.84254 -25.84208 -24.75259 -24.38439 -22.91784 -22.70466 -21.43996 -21.14777 -20.16587 -19.35270 -18.52531 -18.13211 -17.41802 -17.04636 -16.70694 -16.39202 -16.28990 -16.01731 -15.59084 -15.19697 -15.09464 -14.84867 -14.67249 -14.47268 -14.28397 -13.48651 -13.41462 -13.38213 -13.28332 -12.99485 -12.91197 -12.86991 -12.64926 -12.37936 -12.30542 -12.13281 -12.02100 -11.83007 -11.78467 -11.00819 -10.80794 -10.45603 -10.10919 -10.04763 -9.57227 -8.49952 -8.45674 -6.22040 -0.39968 -0.08797 0.18877 1.18017 1.29683 1.40902 1.43161 1.59955 1.67088 1.95154 2.04274 2.28336 2.49996 2.62049 2.86841 2.92251 3.10701 3.15260 3.72889 3.79921 3.85875 4.11285 4.27721 4.31907 4.45856 4.47816 4.57391 4.68031 4.75202 4.89295 4.92381 5.02416 5.07531 5.15808 5.28324 5.29916 5.33927 5.49172 5.60992 5.63674 5.80528 5.97634 6.33510 6.72155 6.75544 7.12313 7.35771 7.47815 7.69975 8.54049 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002490 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.506358 B =11241.568279 C =13078.246180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.011 4.011 3 C -0.119 4.119 4 C -0.041 4.041 5 C -0.042 4.042 6 C 0.212 3.788 7 N -0.297 5.297 8 N -0.057 5.057 9 N -0.199 5.199 10 H 0.495 0.505 11 N -0.288 5.288 12 C -0.042 4.042 13 C -0.144 4.144 14 C 0.539 3.461 15 O -0.556 6.556 16 N -0.614 5.614 17 C -0.043 4.043 18 C -0.055 4.055 19 N -0.309 5.309 20 N -0.168 5.168 21 C -0.353 4.353 22 H 0.140 0.860 23 C -0.007 4.007 24 N -0.824 5.824 25 Si 1.019 2.981 26 H -0.242 1.242 27 H -0.272 1.272 28 H -0.272 1.272 29 C -0.082 4.082 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.414 0.586 37 H 0.173 0.827 38 H 0.276 0.724 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.962 22.172 0.531 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.013 4.013 3 C -0.137 4.137 4 C -0.061 4.061 5 C -0.045 4.045 6 C -0.067 4.067 7 N -0.169 5.169 8 N -0.052 5.052 9 N -0.050 5.050 10 H 0.354 0.646 11 N -0.141 5.141 12 C -0.063 4.063 13 C -0.147 4.147 14 C 0.329 3.671 15 O -0.436 6.436 16 N -0.258 5.258 17 C -0.149 4.149 18 C -0.230 4.230 19 N -0.141 5.141 20 N 0.063 4.937 21 C -0.484 4.484 22 H 0.157 0.843 23 C -0.219 4.219 24 N -0.452 5.452 25 Si 0.838 3.162 26 H -0.164 1.164 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.232 4.232 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.157 0.843 36 H 0.252 0.748 37 H 0.189 0.811 38 H 0.086 0.914 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 15.618 20.954 0.394 26.137 hybrid contribution 0.945 0.111 0.034 0.952 sum 16.563 21.065 0.429 26.801 Atomic orbital electron populations 1.21076 0.89860 1.03614 1.03261 1.20412 0.97359 0.91707 0.91777 1.21291 0.93497 0.97974 1.00930 1.21595 0.94147 0.97394 0.92945 1.17123 0.84601 0.94610 1.08205 1.23664 0.96448 0.84578 1.02056 1.76117 0.95271 1.26640 1.18908 1.78894 1.16534 0.94686 1.15095 1.47805 1.07853 1.05595 1.43724 0.64570 1.74854 0.91139 1.26078 1.21989 1.21277 0.92204 0.98498 0.94296 1.19508 0.93193 0.92487 1.09558 1.18606 0.87096 0.83881 0.77507 1.90619 1.15043 1.86871 1.51064 1.42417 1.10307 1.02758 1.70360 1.17303 0.91286 0.85353 1.20967 1.24213 0.95138 0.94791 1.08906 1.78140 1.05865 1.03132 1.26936 1.44828 1.03059 1.05757 1.40033 1.20639 0.97437 0.77145 1.53176 0.84309 1.26878 0.93773 1.06986 0.94218 1.70404 0.99273 1.38456 1.37098 0.84535 0.80254 0.73175 0.78220 1.16435 1.19728 1.19738 1.21977 0.95328 0.87973 1.17966 0.91003 0.91220 0.89216 0.81013 0.81927 0.84276 0.74817 0.81066 0.91400 0.79810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.70 71.24 0.62 -2.27 16 2 C -0.01 -0.24 5.92 -19.57 -0.12 -0.36 16 3 C -0.12 -1.79 9.64 22.20 0.21 -1.58 16 4 C -0.04 -0.60 9.69 22.53 0.22 -0.38 16 5 C -0.04 -0.82 5.87 -20.07 -0.12 -0.94 16 6 C 0.21 4.19 7.93 137.39 1.09 5.28 16 7 N -0.30 -6.66 12.23 -52.17 -0.64 -7.30 16 8 N -0.06 -1.01 13.47 37.02 0.50 -0.52 16 9 N -0.20 -2.10 7.90 37.02 0.29 -1.81 16 10 H 0.50 0.09 8.96 -347.53 -3.12 -3.03 16 11 N -0.29 -4.28 12.07 -52.12 -0.63 -4.91 16 12 C -0.04 -0.96 9.18 22.74 0.21 -0.76 16 13 C -0.14 -3.92 5.87 -20.12 -0.12 -4.03 16 14 C 0.54 19.56 7.67 86.79 0.67 20.22 16 15 O -0.56 -23.68 10.49 -3.96 -0.04 -23.72 16 16 N -0.61 -22.68 5.41 -306.52 -1.66 -24.34 16 17 C -0.04 -2.04 6.90 37.75 0.26 -1.78 16 18 C -0.06 -3.05 10.85 85.42 0.93 -2.12 16 19 N -0.31 -18.91 10.40 -56.46 -0.59 -19.50 16 20 N -0.17 -9.53 3.74 -190.00 -0.71 -10.24 16 21 C -0.35 -19.07 10.25 84.01 0.86 -18.21 16 22 H 0.14 6.55 7.83 -2.91 -0.02 6.53 16 23 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 24 N -0.82 -48.25 11.81 21.66 0.26 -47.99 16 25 Si 1.02 39.33 29.55 68.60 2.03 41.36 16 26 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 27 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 28 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 29 C -0.08 -3.93 11.49 83.38 0.96 -2.98 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.15 5.88 -2.39 -0.01 2.14 16 32 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 33 H 0.17 1.38 8.05 -2.91 -0.02 1.36 16 34 H 0.16 1.53 7.87 -2.92 -0.02 1.51 16 35 H 0.14 3.10 6.27 -2.91 -0.02 3.08 16 36 H 0.41 12.14 6.89 -92.70 -0.64 11.50 16 37 H 0.17 9.41 5.92 -2.91 -0.02 9.40 16 38 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.18 7.10 8.06 -2.91 -0.02 7.08 16 Total: -1.00 -81.20 344.06 2.36 -78.84 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -2.58 Total: 29.96 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 6.14 Total: -9.82 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.18 Total: -116.61 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.04 Total: -23.72 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -81.20 2.36 -78.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592100479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.083 kcal (2) G-P(sol) polarization free energy of solvation -81.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds