Wall clock time and date at job start Tue Mar 31 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34811 * 126.13358 * 2 1 4 4 H 0.97002 * 125.82675 * 359.97438 * 3 2 1 5 5 N 1.39995 * 108.34433 * 179.97438 * 3 2 1 6 6 C 1.31114 * 108.47417 * 359.97438 * 5 3 2 7 7 N 1.39871 * 126.03101 * 180.02562 * 6 5 3 8 8 C 1.34775 * 120.00240 * 359.97438 * 7 6 5 9 9 O 1.21608 * 119.99911 * 0.02562 * 8 7 6 10 10 C 1.47589 * 120.00378 * 180.02562 * 8 7 6 11 11 C 1.40045 * 119.89580 * 359.72561 * 10 8 7 12 12 C 1.36299 * 120.10278 * 179.75674 * 11 10 8 13 13 C 1.40892 * 119.89704 * 0.53980 * 12 11 10 14 14 C 1.41095 * 120.10536 * 179.69158 * 13 12 11 15 15 H 1.07996 * 120.00072 * 204.66192 * 14 13 12 16 16 C 1.40233 * 119.99448 * 24.65941 * 14 13 12 17 17 N 1.30638 * 120.00206 * 17.88211 * 16 14 13 18 18 Si 1.86801 * 119.99448 * 197.87960 * 16 14 13 19 19 H 1.48502 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46746 * 120.00165 * 18 16 14 21 21 H 1.48500 * 109.47062 * 239.99919 * 18 16 14 22 22 C 1.40905 * 119.79444 * 359.71631 * 13 12 11 23 23 C 1.36297 * 119.89495 * 359.97438 * 22 13 12 24 24 C 1.36357 * 126.12598 * 179.68588 * 2 1 3 25 25 C 1.48451 * 126.24953 * 0.04157 * 24 2 1 26 26 N 1.33682 * 126.30467 * 359.68519 * 25 24 2 27 27 N 1.28566 * 109.84568 * 179.81872 * 26 25 24 28 28 N 1.28923 * 109.72599 * 0.45550 * 27 26 25 29 29 H 0.96997 * 126.43549 * 179.71923 * 28 27 26 30 30 N 1.31978 * 126.30435 * 180.02562 * 25 24 2 31 31 H 1.09006 * 109.46538 * 90.02592 * 1 2 3 32 32 H 1.09002 * 109.47109 * 330.02771 * 1 2 3 33 33 H 1.09001 * 109.47408 * 210.02159 * 1 2 3 34 34 H 0.97003 * 119.99982 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.94290 * 0.02562 * 11 10 8 36 36 H 1.08008 * 120.05164 * 180.24954 * 12 11 10 37 37 H 0.97001 * 119.99732 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.05056 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.94950 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0888 0.0000 4 1 2.0016 2.0111 -0.0004 5 7 3.6350 0.6611 0.0006 6 6 3.6507 -0.6500 0.0015 7 7 4.7916 -1.4591 0.0028 8 6 6.0165 -0.8970 0.0027 9 8 6.1298 0.3138 0.0020 10 6 7.2203 -1.7508 0.0036 11 6 7.0874 -3.1449 0.0102 12 6 8.1963 -3.9374 0.0060 13 6 9.4778 -3.3520 0.0064 14 6 10.6287 -4.1682 0.0086 15 1 11.5605 -3.7868 0.3992 16 6 10.5625 -5.4748 -0.4964 17 7 9.5724 -5.8255 -1.2731 18 14 11.8902 -6.7137 -0.0583 19 1 12.8924 -6.0720 0.8300 20 1 11.2763 -7.8699 0.6428 21 1 12.5568 -7.1843 -1.2990 22 6 9.6066 -1.9489 0.0051 23 6 8.4920 -1.1644 0.0030 24 6 2.3110 -1.1014 0.0060 25 6 1.8615 -2.5162 0.0129 26 7 0.5951 -2.9443 0.0203 27 7 0.5689 -4.2297 0.0209 28 7 1.7734 -4.6895 0.0239 29 1 2.0333 -5.6240 0.0289 30 7 2.6386 -3.5829 0.0192 31 1 -0.3632 -0.0005 -1.0278 32 1 -0.3633 0.8902 0.5134 33 1 -0.3634 -0.8898 0.5142 34 1 4.7012 -2.4249 0.0038 35 1 6.1045 -3.5927 0.0144 36 1 8.0927 -5.0125 0.0071 37 1 9.5269 -6.7292 -1.6227 38 1 10.5870 -1.4957 0.0059 39 1 8.5897 -0.0889 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592332894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:32 Heat of formation + Delta-G solvation = 182.616575 kcal Electronic energy + Delta-G solvation = -27712.900619 eV Core-core repulsion = 23659.971009 eV Total energy + Delta-G solvation = -4052.929609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24236 -41.42872 -39.07325 -37.17048 -34.66753 -34.07082 -33.92160 -32.93656 -31.97871 -30.65764 -29.75735 -29.47544 -27.35748 -26.08600 -24.63955 -23.29870 -22.97360 -21.17495 -20.89159 -20.30351 -19.32021 -18.55279 -17.74731 -17.55705 -16.62422 -16.48855 -15.89037 -15.42492 -15.35085 -14.75255 -14.41028 -14.12805 -14.06646 -14.00620 -13.33858 -13.02104 -12.88419 -12.83180 -12.58893 -12.27452 -12.14625 -11.97730 -11.45368 -11.41834 -11.32397 -11.02542 -11.00549 -10.88741 -10.80035 -10.62390 -10.55151 -10.07427 -9.60764 -9.39340 -9.04205 -8.66983 -8.23558 -7.76173 -7.58886 -7.08678 -4.64922 0.75107 1.44941 1.95132 2.03854 2.32375 2.55621 2.84463 2.92124 2.97802 3.00470 3.07048 3.42295 3.70496 3.85144 3.89889 4.07849 4.53414 4.56980 4.81912 4.97595 5.29727 5.38767 5.44081 5.52868 5.66381 5.73097 5.83235 6.02906 6.09977 6.28377 6.43501 6.73353 6.78248 6.89831 7.00525 7.05319 7.12380 7.36242 7.42187 7.64750 7.76451 7.82103 8.02178 8.03777 8.18883 8.35429 8.58340 8.70528 8.93446 9.82969 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.002900 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.002893 B = 9654.283731 C =11489.152995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.165 3.835 3 N -0.464 5.464 4 H 0.445 0.555 5 N -0.272 5.272 6 C 0.354 3.646 7 N -0.642 5.642 8 C 0.563 3.437 9 O -0.525 6.525 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.177 4.177 13 C 0.130 3.870 14 C -0.438 4.438 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.768 5.768 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.238 4.238 23 C -0.017 4.017 24 C -0.210 4.210 25 C 0.302 3.698 26 N -0.307 5.307 27 N 0.008 4.992 28 N -0.295 5.295 29 H 0.471 0.529 30 N -0.306 5.306 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.423 0.577 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.287 0.713 38 H 0.100 0.900 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.694 1.136 1.669 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.029 3.971 3 N -0.171 5.171 4 H 0.291 0.709 5 N -0.102 5.102 6 C 0.093 3.907 7 N -0.294 5.294 8 C 0.358 3.642 9 O -0.400 6.400 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.196 4.196 13 C 0.126 3.874 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.148 4.148 17 N -0.391 5.391 18 Si 0.737 3.263 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.258 4.258 23 C -0.036 4.036 24 C -0.228 4.228 25 C 0.021 3.979 26 N -0.185 5.185 27 N 0.012 4.988 28 N -0.142 5.142 29 H 0.325 0.675 30 N -0.150 5.150 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.263 0.737 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.200 2.325 1.522 16.436 hybrid contribution 0.395 -1.798 -0.002 1.841 sum -15.804 0.527 1.520 15.886 Atomic orbital electron populations 1.20711 0.85861 1.05020 1.04378 1.20984 0.94752 0.86366 0.95011 1.46174 1.04138 1.08053 1.58737 0.70937 1.78217 0.93068 1.08939 1.30003 1.19250 0.86223 0.89671 0.95574 1.43405 1.02471 1.09965 1.73559 1.18906 0.82305 0.88213 0.74729 1.90740 1.85811 1.14457 1.48990 1.18726 0.91065 0.92497 1.26626 1.20507 0.97275 0.92288 0.98006 1.20957 0.91547 0.99485 1.07586 1.17811 0.93117 0.91317 0.85135 1.19910 0.97321 0.96213 1.33131 0.89551 1.26122 0.96868 0.99359 0.92440 1.69751 1.28976 1.20332 1.20078 0.86163 0.80820 0.79757 0.79590 1.18003 1.19361 1.19627 1.20714 0.96605 0.93739 1.14711 1.20347 0.91260 0.98164 0.93848 1.16446 0.90977 0.86655 1.28762 1.22499 0.86855 0.93114 0.95421 1.75363 1.19951 1.00802 1.22430 1.78258 1.06087 1.05308 1.09195 1.50914 1.01378 1.11487 1.50432 0.67486 1.78802 1.16445 0.92716 1.27033 0.89284 0.90590 0.87710 0.73668 0.89183 0.86104 0.90221 0.88207 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.00 36.01 0.36 -0.36 16 2 C 0.17 1.88 7.24 -81.96 -0.59 1.28 16 3 N -0.46 -5.56 7.32 33.64 0.25 -5.31 16 4 H 0.45 3.49 8.96 -182.67 -1.64 1.85 16 5 N -0.27 -4.88 10.89 31.56 0.34 -4.54 16 6 C 0.35 6.35 7.81 -154.39 -1.21 5.15 16 7 N -0.64 -12.39 5.39 -11.90 -0.06 -12.46 16 8 C 0.56 12.66 7.73 -12.45 -0.10 12.57 16 9 O -0.52 -12.95 15.04 5.27 0.08 -12.87 16 10 C -0.28 -6.60 5.89 -104.73 -0.62 -7.22 16 11 C -0.06 -1.38 9.47 -39.60 -0.38 -1.75 16 12 C -0.18 -4.28 8.63 -39.28 -0.34 -4.62 16 13 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 14 C -0.44 -10.71 9.04 -37.75 -0.34 -11.05 16 15 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 16 C 0.07 1.68 5.13 -17.31 -0.09 1.60 16 17 N -0.77 -18.02 10.95 55.56 0.61 -17.41 16 18 Si 0.91 16.92 29.60 -169.99 -5.03 11.89 16 19 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 23 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 24 C -0.21 -3.08 6.11 -105.17 -0.64 -3.72 16 25 C 0.30 4.22 8.09 -156.46 -1.26 2.95 16 26 N -0.31 -3.84 10.40 32.13 0.33 -3.50 16 27 N 0.01 0.09 13.42 60.35 0.81 0.90 16 28 N -0.29 -2.96 8.44 60.35 0.51 -2.45 16 29 H 0.47 2.72 8.96 -331.92 -2.98 -0.26 16 30 N -0.31 -4.16 11.33 32.14 0.36 -3.80 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.84 6.53 -51.93 -0.34 0.50 16 34 H 0.42 7.53 5.17 -40.82 -0.21 7.32 16 35 H 0.09 1.75 6.37 -52.48 -0.33 1.42 16 36 H 0.12 2.94 6.16 -52.48 -0.32 2.62 16 37 H 0.29 6.00 8.29 -40.82 -0.34 5.67 16 38 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -32.45 344.41 -10.21 -42.65 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.04 Total: 11.10 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -6.56 Total: -9.38 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 3.15 Total: -48.57 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.45 -10.21 -42.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592332894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.270 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds