Wall clock time and date at job start Tue Mar 31 2020 22:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34811 * 126.13358 * 2 1 4 4 H 0.97002 * 125.82675 * 359.97438 * 3 2 1 5 5 N 1.39995 * 108.34433 * 179.97438 * 3 2 1 6 6 C 1.31114 * 108.47417 * 359.97438 * 5 3 2 7 7 N 1.39871 * 126.03101 * 180.02562 * 6 5 3 8 8 C 1.34775 * 120.00240 * 359.97438 * 7 6 5 9 9 O 1.21608 * 119.99911 * 0.02562 * 8 7 6 10 10 C 1.47589 * 120.00378 * 180.02562 * 8 7 6 11 11 C 1.40045 * 119.89580 * 359.72561 * 10 8 7 12 12 C 1.36299 * 120.10278 * 179.75674 * 11 10 8 13 13 C 1.40892 * 119.89704 * 0.53980 * 12 11 10 14 14 C 1.41095 * 120.10536 * 179.69158 * 13 12 11 15 15 H 1.07996 * 120.00072 * 204.66192 * 14 13 12 16 16 C 1.40233 * 119.99448 * 24.65941 * 14 13 12 17 17 N 1.30638 * 120.00206 * 17.88211 * 16 14 13 18 18 Si 1.86801 * 119.99448 * 197.87960 * 16 14 13 19 19 H 1.48502 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46746 * 120.00165 * 18 16 14 21 21 H 1.48500 * 109.47062 * 239.99919 * 18 16 14 22 22 C 1.40905 * 119.79444 * 359.71631 * 13 12 11 23 23 C 1.36297 * 119.89495 * 359.97438 * 22 13 12 24 24 C 1.36357 * 126.12598 * 179.68588 * 2 1 3 25 25 C 1.48451 * 126.24953 * 0.04157 * 24 2 1 26 26 N 1.33682 * 126.30467 * 359.68519 * 25 24 2 27 27 N 1.28566 * 109.84568 * 179.81872 * 26 25 24 28 28 N 1.28923 * 109.72599 * 0.45550 * 27 26 25 29 29 H 0.96997 * 126.43549 * 179.71923 * 28 27 26 30 30 N 1.31978 * 126.30435 * 180.02562 * 25 24 2 31 31 H 1.09006 * 109.46538 * 90.02592 * 1 2 3 32 32 H 1.09002 * 109.47109 * 330.02771 * 1 2 3 33 33 H 1.09001 * 109.47408 * 210.02159 * 1 2 3 34 34 H 0.97003 * 119.99982 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.94290 * 0.02562 * 11 10 8 36 36 H 1.08008 * 120.05164 * 180.24954 * 12 11 10 37 37 H 0.97001 * 119.99732 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.05056 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.94950 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0888 0.0000 4 1 2.0016 2.0111 -0.0004 5 7 3.6350 0.6611 0.0006 6 6 3.6507 -0.6500 0.0015 7 7 4.7916 -1.4591 0.0028 8 6 6.0165 -0.8970 0.0027 9 8 6.1298 0.3138 0.0020 10 6 7.2203 -1.7508 0.0036 11 6 7.0874 -3.1449 0.0102 12 6 8.1963 -3.9374 0.0060 13 6 9.4778 -3.3520 0.0064 14 6 10.6287 -4.1682 0.0086 15 1 11.5605 -3.7868 0.3992 16 6 10.5625 -5.4748 -0.4964 17 7 9.5724 -5.8255 -1.2731 18 14 11.8902 -6.7137 -0.0583 19 1 12.8924 -6.0720 0.8300 20 1 11.2763 -7.8699 0.6428 21 1 12.5568 -7.1843 -1.2990 22 6 9.6066 -1.9489 0.0051 23 6 8.4920 -1.1644 0.0030 24 6 2.3110 -1.1014 0.0060 25 6 1.8615 -2.5162 0.0129 26 7 0.5951 -2.9443 0.0203 27 7 0.5689 -4.2297 0.0209 28 7 1.7734 -4.6895 0.0239 29 1 2.0333 -5.6240 0.0289 30 7 2.6386 -3.5829 0.0192 31 1 -0.3632 -0.0005 -1.0278 32 1 -0.3633 0.8902 0.5134 33 1 -0.3634 -0.8898 0.5142 34 1 4.7012 -2.4249 0.0038 35 1 6.1045 -3.5927 0.0144 36 1 8.0927 -5.0125 0.0071 37 1 9.5269 -6.7292 -1.6227 38 1 10.5870 -1.4957 0.0059 39 1 8.5897 -0.0889 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592332894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:31 Heat of formation + Delta-G solvation = 160.877590 kcal Electronic energy + Delta-G solvation = -27713.843292 eV Core-core repulsion = 23659.971009 eV Total energy + Delta-G solvation = -4053.872282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.18262 -42.57654 -40.74771 -38.95607 -36.13145 -35.71030 -35.05156 -33.90836 -33.09487 -32.09439 -31.35456 -31.12883 -28.25283 -27.84734 -25.63284 -24.55548 -24.25548 -22.93159 -22.46370 -21.49986 -20.75263 -19.51344 -19.39531 -19.03181 -17.83838 -17.57080 -17.41408 -17.06269 -16.55421 -15.79651 -15.77410 -15.69777 -15.51676 -15.33164 -15.10326 -14.52863 -14.00159 -13.93683 -13.76880 -13.64880 -13.35436 -13.25837 -13.06257 -12.86846 -12.67500 -12.42435 -12.39826 -12.02674 -11.99319 -11.82928 -11.81366 -11.69142 -11.40660 -11.14102 -10.77852 -9.84657 -9.62256 -9.53419 -9.37036 -8.82071 -6.50769 -0.18512 0.28407 0.52010 0.97677 1.13968 1.22373 1.39175 1.42729 1.44655 1.55967 1.83071 2.15869 2.23441 2.24903 2.76641 2.84108 3.07399 3.66174 3.69566 3.76023 4.09457 4.20760 4.26511 4.38712 4.42546 4.51492 4.71360 4.82587 4.90534 4.97664 5.01281 5.11927 5.25757 5.29910 5.51703 5.57959 5.73045 5.76467 5.86823 5.96844 6.07668 6.18897 6.37877 6.51095 6.72544 6.74101 6.85346 7.10681 7.25475 8.13074 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.002900 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.002893 B = 9654.283731 C =11489.152995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.193 3.807 3 N -0.446 5.446 4 H 0.463 0.537 5 N -0.318 5.318 6 C 0.327 3.673 7 N -0.635 5.635 8 C 0.564 3.436 9 O -0.554 6.554 10 C -0.297 4.297 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.104 3.896 14 C -0.465 4.465 15 H 0.088 0.912 16 C 0.038 3.962 17 N -0.793 5.793 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.264 1.264 22 C -0.251 4.251 23 C -0.025 4.025 24 C -0.230 4.230 25 C 0.294 3.706 26 N -0.308 5.308 27 N 0.013 4.987 28 N -0.273 5.273 29 H 0.487 0.513 30 N -0.331 5.331 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.428 0.572 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.298 0.702 38 H 0.108 0.892 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 0.181 1.760 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.055 3.945 3 N -0.156 5.156 4 H 0.312 0.688 5 N -0.148 5.148 6 C 0.067 3.933 7 N -0.287 5.287 8 C 0.359 3.641 9 O -0.432 6.432 10 C -0.301 4.301 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.100 3.900 14 C -0.492 4.492 15 H 0.106 0.894 16 C -0.182 4.182 17 N -0.416 5.416 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.184 1.184 21 H -0.188 1.188 22 C -0.270 4.270 23 C -0.045 4.045 24 C -0.248 4.248 25 C 0.013 3.987 26 N -0.186 5.186 27 N 0.017 4.983 28 N -0.124 5.124 29 H 0.345 0.655 30 N -0.176 5.176 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.269 0.731 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.079 1.370 1.609 18.203 hybrid contribution 0.798 -1.484 -0.061 1.686 sum -17.281 -0.113 1.548 17.351 Atomic orbital electron populations 1.20909 0.82185 1.06504 1.05939 1.21592 0.96403 0.84843 0.91642 1.46088 1.02391 1.09330 1.57762 0.68758 1.78043 0.96607 1.09415 1.30720 1.19430 0.86714 0.89976 0.97136 1.43078 1.02272 1.10339 1.73006 1.18763 0.83125 0.87671 0.74537 1.90708 1.86490 1.15427 1.50540 1.18946 0.91505 0.93096 1.26580 1.20684 0.98081 0.91891 0.96553 1.20983 0.91900 0.99414 1.08978 1.18154 0.93997 0.91954 0.85860 1.20187 0.97303 0.97607 1.34088 0.89368 1.26958 0.99160 1.00452 0.91636 1.69764 1.30325 1.21451 1.20074 0.85052 0.77717 0.77036 0.79401 1.18004 1.18389 1.18828 1.20862 0.97190 0.93717 1.15264 1.20476 0.91647 0.98359 0.93969 1.16624 0.89924 0.88058 1.30214 1.22447 0.87390 0.92937 0.95906 1.75354 1.19268 1.01137 1.22858 1.78207 1.06221 1.05015 1.08895 1.50889 1.00636 1.11855 1.49015 0.65452 1.78733 1.17600 0.93522 1.27751 0.87403 0.87098 0.88159 0.73068 0.86596 0.86533 0.89032 0.87345 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.00 71.24 0.71 -0.31 16 2 C 0.19 3.95 7.24 41.66 0.30 4.25 16 3 N -0.45 -9.97 7.32 -47.48 -0.35 -10.32 16 4 H 0.46 6.25 8.96 -213.38 -1.91 4.34 16 5 N -0.32 -11.40 10.89 -54.05 -0.59 -11.99 16 6 C 0.33 11.80 7.81 133.70 1.04 12.84 16 7 N -0.64 -24.94 5.39 -309.81 -1.67 -26.61 16 8 C 0.56 26.04 7.73 86.71 0.67 26.71 16 9 O -0.55 -28.18 15.04 -4.06 -0.06 -28.24 16 10 C -0.30 -14.13 5.89 -19.93 -0.12 -14.25 16 11 C -0.05 -2.41 9.47 22.26 0.21 -2.20 16 12 C -0.19 -9.58 8.63 22.47 0.19 -9.38 16 13 C 0.10 5.35 5.58 -21.28 -0.12 5.23 16 14 C -0.47 -23.08 9.04 23.46 0.21 -22.86 16 15 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 16 C 0.04 1.71 5.13 85.36 0.44 2.15 16 17 N -0.79 -37.11 10.95 21.87 0.24 -36.87 16 18 Si 0.99 33.95 29.60 68.60 2.03 35.98 16 19 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 20 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 22 C -0.25 -12.43 9.73 22.47 0.22 -12.21 16 23 C -0.03 -1.23 9.52 22.25 0.21 -1.02 16 24 C -0.23 -6.53 6.11 -20.22 -0.12 -6.66 16 25 C 0.29 7.87 8.09 137.43 1.11 8.98 16 26 N -0.31 -7.13 10.40 -52.28 -0.54 -7.67 16 27 N 0.01 0.26 13.42 37.02 0.50 0.76 16 28 N -0.27 -5.04 8.44 37.02 0.31 -4.73 16 29 H 0.49 4.79 8.96 -340.35 -3.05 1.74 16 30 N -0.33 -8.71 11.33 -52.24 -0.59 -9.30 16 31 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 1.28 6.53 -2.39 -0.02 1.26 16 34 H 0.43 15.39 5.17 -92.71 -0.48 14.91 16 35 H 0.12 4.53 6.37 -2.91 -0.02 4.51 16 36 H 0.12 5.78 6.16 -2.91 -0.02 5.77 16 37 H 0.30 12.29 8.29 -92.71 -0.77 11.52 16 38 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 39 H 0.11 4.98 7.63 -2.91 -0.02 4.96 16 Total: -1.00 -72.11 344.41 -0.01 -72.12 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -4.25 Total: 35.59 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.97 Total: -8.73 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -2.69 Total: -106.72 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.06 Total: -28.24 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -72.11 -0.01 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592332894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.994 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds