Wall clock time and date at job start Tue Mar 31 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00094 * 2 1 4 4 H 1.48494 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46986 * 300.00230 * 3 2 1 6 6 H 1.48503 * 109.46972 * 59.99870 * 3 2 1 7 7 C 1.37879 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00220 * 185.00683 * 7 2 1 9 9 C 1.50705 * 119.99708 * 5.00506 * 7 2 1 10 10 H 1.08995 * 109.46579 * 178.00000 * 9 7 2 11 11 C 1.50700 * 109.46912 * 57.99861 * 9 7 2 12 12 O 1.20827 * 119.99512 * 269.99726 * 11 9 7 13 13 N 1.34774 * 120.00030 * 90.00300 * 11 9 7 14 14 N 1.39968 * 125.97613 * 0.03696 * 13 11 9 15 15 C 1.30479 * 109.03611 * 179.97438 * 14 13 11 16 16 C 1.41027 * 108.53925 * 359.76445 * 15 14 13 17 17 C 1.48337 * 126.32898 * 180.27750 * 16 15 14 18 18 N 1.33714 * 126.31230 * 180.15742 * 17 16 15 19 19 N 1.28568 * 109.84321 * 179.97438 * 18 17 16 20 20 N 1.28913 * 109.73903 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.43298 * 179.97438 * 20 19 18 22 22 N 1.32035 * 126.31487 * 359.84355 * 17 16 15 23 23 C 1.36627 * 125.97323 * 179.97438 * 13 11 9 24 24 N 1.38499 * 126.48505 * 0.02562 * 23 13 11 25 25 C 1.50697 * 109.46982 * 297.99781 * 9 7 2 26 26 C 1.38242 * 120.00176 * 336.46715 * 25 9 7 27 27 C 1.38234 * 120.00236 * 179.81108 * 26 25 9 28 28 C 1.38243 * 119.99748 * 0.39661 * 27 26 25 29 29 C 1.38236 * 119.99954 * 359.85844 * 28 27 26 30 30 C 1.38232 * 120.00187 * 156.74324 * 25 9 7 31 31 H 0.97001 * 120.00201 * 359.97438 * 1 2 3 32 32 H 1.07992 * 125.73031 * 179.97438 * 15 14 13 33 33 H 0.97010 * 120.00063 * 359.97438 * 24 23 13 34 34 H 0.97000 * 120.00550 * 179.72012 * 24 23 13 35 35 H 1.08001 * 119.99455 * 0.02562 * 26 25 9 36 36 H 1.07993 * 120.00199 * 180.23091 * 27 26 25 37 37 H 1.07997 * 119.99948 * 179.83519 * 28 27 26 38 38 H 1.07996 * 119.99815 * 179.97438 * 29 28 27 39 39 H 1.07999 * 120.00062 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1958 0.0811 9 6 1.2553 -2.4966 -0.1150 10 1 1.9652 -3.3235 -0.1337 11 6 0.4458 -2.5005 -1.3861 12 8 -0.6876 -2.0819 -1.3817 13 7 0.9861 -2.9708 -2.5277 14 7 2.2802 -3.4834 -2.6747 15 6 2.4567 -3.8438 -3.9163 16 6 1.2701 -3.5822 -4.6321 17 6 1.0365 -3.8470 -6.0729 18 7 -0.0877 -3.5960 -6.7519 19 7 0.0563 -3.9483 -7.9800 20 7 1.2389 -4.4292 -8.1591 21 1 1.6033 -4.7671 -8.9921 22 7 1.9022 -4.3685 -6.9225 23 6 0.3659 -3.0318 -3.7436 24 7 -0.9262 -2.6240 -4.0303 25 6 0.3343 -2.6519 1.0676 26 6 0.6013 -1.9782 2.2449 27 6 -0.2456 -2.1176 3.3284 28 6 -1.3552 -2.9372 3.2374 29 6 -1.6193 -3.6150 2.0620 30 6 -0.7744 -3.4725 0.9772 31 1 -0.4850 0.8400 0.0004 32 1 3.3587 -4.2737 -4.3261 33 1 -1.4842 -2.2519 -3.3294 34 1 -1.2721 -2.7070 -4.9328 35 1 1.4698 -1.3403 2.3168 36 1 -0.0391 -1.5884 4.2469 37 1 -2.0155 -3.0482 4.0848 38 1 -2.4859 -4.2555 1.9911 39 1 -0.9809 -4.0020 0.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:07 Heat of formation + Delta-G solvation = 202.534611 kcal Electronic energy + Delta-G solvation = -28859.211646 eV Core-core repulsion = 24807.145748 eV Total energy + Delta-G solvation = -4052.065898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.05040 -41.31082 -38.85429 -37.41834 -34.72728 -33.77351 -33.56425 -32.86216 -31.50100 -30.89952 -29.84451 -28.37306 -27.50876 -24.68266 -24.44479 -23.30310 -22.45374 -21.46825 -20.73731 -20.18055 -19.16192 -18.66764 -17.23631 -16.49427 -16.39590 -16.12501 -15.85125 -15.42464 -15.18401 -14.82666 -14.53333 -14.23941 -13.87774 -13.77947 -13.31825 -12.98950 -12.81330 -12.42141 -12.36671 -12.19756 -12.00090 -11.48931 -11.12201 -11.04620 -10.98396 -10.87986 -10.79449 -10.74074 -10.62389 -10.38755 -10.16979 -9.79944 -9.66367 -9.02031 -8.95921 -8.73191 -7.87590 -7.54404 -7.52961 -6.19430 -4.37073 0.93208 1.67059 2.17319 2.18985 2.38904 2.46610 2.73802 3.17541 3.27629 3.30652 3.36395 3.76178 4.00324 4.02902 4.25466 4.30476 4.77032 4.91449 5.07077 5.33347 5.53914 5.71221 5.75914 5.81372 5.88618 5.93052 6.08964 6.27626 6.49563 6.50307 6.53878 6.63867 6.76502 6.99673 7.02839 7.15636 7.40120 7.46263 7.50302 7.63179 7.66704 7.81536 8.00121 8.08569 8.14482 8.24807 8.63342 8.77135 9.28455 10.76510 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.003684 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.792291 B = 7598.730591 C = 8583.532617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.075 0.925 9 C 0.076 3.924 10 H 0.075 0.925 11 C 0.553 3.447 12 O -0.457 6.457 13 N -0.373 5.373 14 N -0.266 5.266 15 C 0.130 3.870 16 C -0.281 4.281 17 C 0.320 3.680 18 N -0.324 5.324 19 N 0.006 4.994 20 N -0.307 5.307 21 H 0.466 0.534 22 N -0.311 5.311 23 C 0.442 3.558 24 N -0.816 5.816 25 C -0.007 4.007 26 C -0.066 4.066 27 C -0.137 4.137 28 C -0.145 4.145 29 C -0.134 4.134 30 C -0.118 4.118 31 H 0.265 0.735 32 H 0.192 0.808 33 H 0.419 0.581 34 H 0.421 0.579 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -7.967 -8.420 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.093 0.907 9 C 0.055 3.945 10 H 0.092 0.908 11 C 0.347 3.653 12 O -0.319 6.319 13 N -0.177 5.177 14 N -0.084 5.084 15 C -0.065 4.065 16 C -0.302 4.302 17 C 0.040 3.960 18 N -0.204 5.204 19 N 0.009 4.991 20 N -0.154 5.154 21 H 0.319 0.681 22 N -0.156 5.156 23 C 0.210 3.790 24 N -0.365 5.365 25 C -0.008 4.008 26 C -0.084 4.084 27 C -0.156 4.156 28 C -0.163 4.163 29 C -0.152 4.152 30 C -0.137 4.137 31 H 0.075 0.925 32 H 0.209 0.791 33 H 0.254 0.746 34 H 0.254 0.746 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.160 -7.427 -7.542 10.586 hybrid contribution 0.007 1.071 -1.452 1.804 sum 0.167 -6.356 -8.994 11.015 Atomic orbital electron populations 1.70165 1.05307 1.26986 1.43587 1.25167 0.95026 0.99580 0.94478 0.86551 0.80552 0.83481 0.77826 1.19221 1.21005 1.20615 1.20716 0.93676 0.87991 1.53860 0.90686 1.17837 0.92454 0.99856 0.84375 0.90753 1.22510 0.86363 0.73002 0.83458 1.90473 1.18532 1.39552 1.83387 1.48303 1.11513 1.51101 1.06797 1.77453 0.94457 1.18513 1.18001 1.23753 0.97053 0.95651 0.90049 1.16458 0.97639 1.28652 0.87471 1.22518 0.86556 0.92736 0.94147 1.75234 1.24311 1.23610 0.97199 1.78208 1.02511 1.05880 1.12475 1.50908 1.08095 1.44354 1.12002 0.68075 1.78914 1.19629 1.27052 0.89962 1.18742 0.85459 0.88218 0.86560 1.42348 1.10266 1.67640 1.16223 1.19809 0.93896 0.92230 0.94842 1.20994 0.99228 0.96544 0.91652 1.21000 0.96127 0.99861 0.98575 1.20784 0.98334 0.99803 0.97408 1.20781 0.99315 1.01129 0.93976 1.20843 0.95786 0.99823 0.97204 0.92501 0.79090 0.74597 0.74566 0.85497 0.87728 0.87966 0.87949 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.85 9.90 55.43 0.55 -21.30 16 2 C 0.07 1.68 4.46 -17.82 -0.08 1.60 16 3 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -12.95 7.22 -34.44 -0.25 -13.20 16 8 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 9 C 0.08 1.76 2.57 -94.07 -0.24 1.52 16 10 H 0.07 1.65 7.70 -51.93 -0.40 1.25 16 11 C 0.55 12.60 5.54 -10.99 -0.06 12.54 16 12 O -0.46 -10.95 11.54 5.94 0.07 -10.89 16 13 N -0.37 -7.62 3.65 -10.98 -0.04 -7.66 16 14 N -0.27 -5.01 11.67 30.81 0.36 -4.65 16 15 C 0.13 2.03 11.97 -17.07 -0.20 1.83 16 16 C -0.28 -4.63 6.15 -104.70 -0.64 -5.28 16 17 C 0.32 4.83 8.14 -156.43 -1.27 3.55 16 18 N -0.32 -4.73 10.70 32.11 0.34 -4.39 16 19 N 0.01 0.07 13.42 60.35 0.81 0.88 16 20 N -0.31 -3.06 8.44 60.35 0.51 -2.55 16 21 H 0.47 2.34 8.96 -331.93 -2.98 -0.63 16 22 N -0.31 -4.07 12.90 32.12 0.41 -3.66 16 23 C 0.44 8.10 7.93 -152.11 -1.21 6.89 16 24 N -0.82 -13.40 9.01 31.61 0.28 -13.12 16 25 C -0.01 -0.15 4.20 -104.62 -0.44 -0.59 16 26 C -0.07 -1.45 8.35 -39.58 -0.33 -1.78 16 27 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 28 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 29 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 30 C -0.12 -2.52 8.43 -39.58 -0.33 -2.85 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 33 H 0.42 7.28 6.69 -40.82 -0.27 7.01 16 34 H 0.42 6.09 7.22 -40.82 -0.29 5.79 16 35 H 0.13 2.84 6.64 -52.49 -0.35 2.49 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 2.04 6.99 -52.49 -0.37 1.67 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -29.78 339.78 -8.75 -38.53 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.89 Total: 13.56 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -6.26 Total: -4.89 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 3.23 Total: -56.45 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.78 -8.75 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.066 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds