Wall clock time and date at job start Tue Mar 31 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00094 * 2 1 4 4 H 1.48494 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46986 * 300.00230 * 3 2 1 6 6 H 1.48503 * 109.46972 * 59.99870 * 3 2 1 7 7 C 1.37879 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00220 * 185.00683 * 7 2 1 9 9 C 1.50705 * 119.99708 * 5.00506 * 7 2 1 10 10 H 1.08995 * 109.46579 * 178.00000 * 9 7 2 11 11 C 1.50700 * 109.46912 * 57.99861 * 9 7 2 12 12 O 1.20827 * 119.99512 * 269.99726 * 11 9 7 13 13 N 1.34774 * 120.00030 * 90.00300 * 11 9 7 14 14 N 1.39968 * 125.97613 * 0.03696 * 13 11 9 15 15 C 1.30479 * 109.03611 * 179.97438 * 14 13 11 16 16 C 1.41027 * 108.53925 * 359.76445 * 15 14 13 17 17 C 1.48337 * 126.32898 * 180.27750 * 16 15 14 18 18 N 1.33714 * 126.31230 * 180.15742 * 17 16 15 19 19 N 1.28568 * 109.84321 * 179.97438 * 18 17 16 20 20 N 1.28913 * 109.73903 * 359.97438 * 19 18 17 21 21 H 0.96996 * 126.43298 * 179.97438 * 20 19 18 22 22 N 1.32035 * 126.31487 * 359.84355 * 17 16 15 23 23 C 1.36627 * 125.97323 * 179.97438 * 13 11 9 24 24 N 1.38499 * 126.48505 * 0.02562 * 23 13 11 25 25 C 1.50697 * 109.46982 * 297.99781 * 9 7 2 26 26 C 1.38242 * 120.00176 * 336.46715 * 25 9 7 27 27 C 1.38234 * 120.00236 * 179.81108 * 26 25 9 28 28 C 1.38243 * 119.99748 * 0.39661 * 27 26 25 29 29 C 1.38236 * 119.99954 * 359.85844 * 28 27 26 30 30 C 1.38232 * 120.00187 * 156.74324 * 25 9 7 31 31 H 0.97001 * 120.00201 * 359.97438 * 1 2 3 32 32 H 1.07992 * 125.73031 * 179.97438 * 15 14 13 33 33 H 0.97010 * 120.00063 * 359.97438 * 24 23 13 34 34 H 0.97000 * 120.00550 * 179.72012 * 24 23 13 35 35 H 1.08001 * 119.99455 * 0.02562 * 26 25 9 36 36 H 1.07993 * 120.00199 * 180.23091 * 27 26 25 37 37 H 1.07997 * 119.99948 * 179.83519 * 28 27 26 38 38 H 1.07996 * 119.99815 * 179.97438 * 29 28 27 39 39 H 1.07999 * 120.00062 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1958 0.0811 9 6 1.2553 -2.4966 -0.1150 10 1 1.9652 -3.3235 -0.1337 11 6 0.4458 -2.5005 -1.3861 12 8 -0.6876 -2.0819 -1.3817 13 7 0.9861 -2.9708 -2.5277 14 7 2.2802 -3.4834 -2.6747 15 6 2.4567 -3.8438 -3.9163 16 6 1.2701 -3.5822 -4.6321 17 6 1.0365 -3.8470 -6.0729 18 7 -0.0877 -3.5960 -6.7519 19 7 0.0563 -3.9483 -7.9800 20 7 1.2389 -4.4292 -8.1591 21 1 1.6033 -4.7671 -8.9921 22 7 1.9022 -4.3685 -6.9225 23 6 0.3659 -3.0318 -3.7436 24 7 -0.9262 -2.6240 -4.0303 25 6 0.3343 -2.6519 1.0676 26 6 0.6013 -1.9782 2.2449 27 6 -0.2456 -2.1176 3.3284 28 6 -1.3552 -2.9372 3.2374 29 6 -1.6193 -3.6150 2.0620 30 6 -0.7744 -3.4725 0.9772 31 1 -0.4850 0.8400 0.0004 32 1 3.3587 -4.2737 -4.3261 33 1 -1.4842 -2.2519 -3.3294 34 1 -1.2721 -2.7070 -4.9328 35 1 1.4698 -1.3403 2.3168 36 1 -0.0391 -1.5884 4.2469 37 1 -2.0155 -3.0482 4.0848 38 1 -2.4859 -4.2555 1.9911 39 1 -0.9809 -4.0020 0.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:07 Heat of formation + Delta-G solvation = 183.627706 kcal Electronic energy + Delta-G solvation = -28860.031511 eV Core-core repulsion = 24807.145748 eV Total energy + Delta-G solvation = -4052.885763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.10164 -42.75804 -40.45794 -39.01449 -36.09473 -35.42098 -34.83610 -33.93853 -33.02586 -32.50448 -31.41846 -29.70591 -29.16463 -26.34475 -25.53322 -24.79281 -23.72547 -23.04610 -22.20683 -21.50332 -20.71037 -19.73301 -18.88450 -18.09742 -17.52737 -17.46272 -17.34495 -17.00688 -16.70734 -16.49085 -15.93453 -15.70326 -15.39812 -15.07675 -14.90637 -14.50890 -14.26205 -14.07112 -13.96803 -13.63182 -13.24306 -13.10279 -12.87347 -12.56517 -12.42626 -12.35361 -12.19727 -11.96455 -11.81176 -11.76858 -11.73724 -11.49684 -11.36056 -10.79347 -10.62644 -10.39344 -9.44957 -9.15580 -8.84542 -8.09478 -6.30975 -0.13130 0.30336 0.81540 0.88827 0.96476 1.16773 1.36279 1.42157 1.46415 1.50872 2.08055 2.15871 2.39909 2.65972 2.88182 3.08241 3.16832 3.27745 3.62993 4.03104 4.22345 4.33439 4.37651 4.39506 4.46886 4.62199 4.67885 4.69564 4.92674 4.98815 5.10084 5.20397 5.41452 5.48815 5.64604 5.73929 5.82375 5.85497 5.92348 5.92858 6.14138 6.34697 6.39215 6.49221 6.64961 6.79681 7.11288 7.18316 7.35621 8.84131 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.003684 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.792291 B = 7598.730591 C = 8583.532617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.035 3.965 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.071 3.929 10 H 0.071 0.929 11 C 0.556 3.444 12 O -0.478 6.478 13 N -0.388 5.388 14 N -0.299 5.299 15 C 0.147 3.853 16 C -0.275 4.275 17 C 0.305 3.695 18 N -0.345 5.345 19 N 0.008 4.992 20 N -0.274 5.274 21 H 0.487 0.513 22 N -0.305 5.305 23 C 0.423 3.577 24 N -0.809 5.809 25 C -0.027 4.027 26 C -0.088 4.088 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.135 4.135 30 C -0.134 4.134 31 H 0.258 0.742 32 H 0.232 0.768 33 H 0.414 0.586 34 H 0.429 0.571 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 -8.815 -9.283 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.050 3.950 10 H 0.089 0.911 11 C 0.350 3.650 12 O -0.343 6.343 13 N -0.192 5.192 14 N -0.117 5.117 15 C -0.047 4.047 16 C -0.296 4.296 17 C 0.025 3.975 18 N -0.223 5.223 19 N 0.012 4.988 20 N -0.126 5.126 21 H 0.346 0.654 22 N -0.150 5.150 23 C 0.192 3.808 24 N -0.357 5.357 25 C -0.028 4.028 26 C -0.106 4.106 27 C -0.157 4.157 28 C -0.159 4.159 29 C -0.153 4.153 30 C -0.152 4.152 31 H 0.067 0.933 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.264 0.736 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.320 -8.301 -8.463 11.859 hybrid contribution 0.023 1.180 -1.376 1.813 sum 0.342 -7.121 -9.839 12.150 Atomic orbital electron populations 1.70299 1.06200 1.26729 1.45099 1.25629 0.95486 1.01633 0.94406 0.85799 0.79844 0.80688 0.77290 1.18682 1.21954 1.20231 1.20815 0.93402 0.88945 1.53508 0.91390 1.17829 0.92795 0.98992 0.85379 0.91133 1.22137 0.86099 0.72696 0.84088 1.90440 1.19200 1.40601 1.84103 1.47995 1.12420 1.51846 1.06983 1.77463 0.94028 1.20330 1.19855 1.24409 0.97877 0.93544 0.88823 1.16569 0.97261 1.27563 0.88187 1.22299 0.87304 0.94082 0.93799 1.75222 1.24640 1.24554 0.97867 1.78174 1.03044 1.05972 1.11658 1.50928 1.07171 1.42316 1.12141 0.65384 1.78855 1.19437 1.26132 0.90544 1.19017 0.86296 0.89187 0.86299 1.42277 1.09731 1.67280 1.16450 1.19830 0.94658 0.93450 0.94855 1.20991 0.99773 0.97216 0.92627 1.21323 0.95835 0.99854 0.98729 1.21201 0.98107 0.98342 0.98215 1.21152 0.99541 1.01131 0.93475 1.20906 0.96177 1.00200 0.97946 0.93282 0.75187 0.75201 0.73551 0.87028 0.85150 0.84188 0.85068 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.03 9.90 21.45 0.21 -45.82 16 2 C 0.03 1.80 4.46 84.66 0.38 2.17 16 3 Si 0.94 41.84 29.54 68.60 2.03 43.86 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.53 -26.94 7.22 25.60 0.18 -26.76 16 8 H 0.07 3.45 7.82 -2.91 -0.02 3.43 16 9 C 0.07 3.43 2.57 -13.03 -0.03 3.39 16 10 H 0.07 3.31 7.70 -2.39 -0.02 3.29 16 11 C 0.56 26.27 5.54 87.66 0.49 26.75 16 12 O -0.48 -23.82 11.54 -1.65 -0.02 -23.84 16 13 N -0.39 -16.28 3.65 -307.22 -1.12 -17.40 16 14 N -0.30 -11.33 11.67 -56.44 -0.66 -11.99 16 15 C 0.15 4.44 11.97 85.58 1.02 5.46 16 16 C -0.27 -8.82 6.15 -19.91 -0.12 -8.94 16 17 C 0.31 8.69 8.14 137.37 1.12 9.81 16 18 N -0.34 -9.54 10.70 -52.32 -0.56 -10.10 16 19 N 0.01 0.17 13.42 37.02 0.50 0.67 16 20 N -0.27 -4.61 8.44 37.02 0.31 -4.30 16 21 H 0.49 3.18 8.96 -340.36 -3.05 0.12 16 22 N -0.30 -7.12 12.90 -52.28 -0.67 -7.80 16 23 C 0.42 15.65 7.93 131.70 1.04 16.70 16 24 N -0.81 -27.07 9.01 -53.91 -0.49 -27.56 16 25 C -0.03 -1.25 4.20 -19.87 -0.08 -1.33 16 26 C -0.09 -3.92 8.35 22.27 0.19 -3.73 16 27 C -0.14 -5.27 10.05 22.27 0.22 -5.05 16 28 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 29 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 30 C -0.13 -5.78 8.43 22.27 0.19 -5.59 16 31 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.23 4.79 8.06 -2.91 -0.02 4.76 16 33 H 0.41 14.92 6.69 -92.70 -0.62 14.30 16 34 H 0.43 12.50 7.22 -92.71 -0.67 11.83 16 35 H 0.11 5.19 6.64 -2.91 -0.02 5.17 16 36 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.09 3.94 6.99 -2.91 -0.02 3.92 16 Total: -1.00 -65.28 339.78 1.41 -63.87 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -3.17 Total: 36.94 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.04 Total: 3.46 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -2.48 Total: -124.29 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.02 Total: -23.84 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.28 1.41 -63.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.497 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds