Wall clock time and date at job start Tue Mar 31 2020 22:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48497 * 109.47459 * 239.99840 * 3 2 1 5 5 H 1.48499 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46835 * 120.00023 * 3 2 1 7 7 C 1.37871 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00505 * 185.63442 * 7 2 1 9 9 C 1.50707 * 119.99721 * 5.63876 * 7 2 1 10 10 H 1.08998 * 109.47300 * 25.14663 * 9 7 2 11 11 C 1.50702 * 109.47145 * 145.15069 * 9 7 2 12 12 O 1.20829 * 119.99704 * 95.00060 * 11 9 7 13 13 N 1.34776 * 119.99918 * 274.99792 * 11 9 7 14 14 N 1.39973 * 125.97555 * 0.02562 * 13 11 9 15 15 C 1.30482 * 109.02796 * 179.71600 * 14 13 11 16 16 C 1.41013 * 108.54511 * 0.44558 * 15 14 13 17 17 C 1.48338 * 126.32983 * 179.82034 * 16 15 14 18 18 N 1.33713 * 126.31667 * 179.71588 * 17 16 15 19 19 N 1.28568 * 109.84981 * 179.73410 * 18 17 16 20 20 N 1.28922 * 109.73275 * 359.97438 * 19 18 17 21 21 H 0.96994 * 126.42512 * 179.97438 * 20 19 18 22 22 N 1.32037 * 126.31031 * 359.39565 * 17 16 15 23 23 C 1.36630 * 125.97316 * 179.97438 * 13 11 9 24 24 N 1.38507 * 126.48454 * 0.02562 * 23 13 11 25 25 C 1.50699 * 109.46890 * 265.14911 * 9 7 2 26 26 C 1.38232 * 120.00282 * 306.59405 * 25 9 7 27 27 C 1.38231 * 120.00460 * 179.79103 * 26 25 9 28 28 C 1.38240 * 119.99726 * 0.43399 * 27 26 25 29 29 C 1.38241 * 119.99838 * 359.81715 * 28 27 26 30 30 C 1.38228 * 119.99904 * 359.97438 * 29 28 27 31 31 H 0.96992 * 119.99739 * 359.97438 * 1 2 3 32 32 H 1.08003 * 125.72021 * 180.26124 * 15 14 13 33 33 H 0.96994 * 119.99892 * 179.97438 * 24 23 13 34 34 H 0.97003 * 119.99744 * 359.97438 * 24 23 13 35 35 H 1.08007 * 120.00056 * 359.97438 * 26 25 9 36 36 H 1.07999 * 120.00748 * 180.27307 * 27 26 25 37 37 H 1.08002 * 120.00460 * 179.83764 * 28 27 26 38 38 H 1.07998 * 119.99480 * 179.97438 * 29 28 27 39 39 H 1.08001 * 120.00316 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0808 -1.1963 0.0913 9 6 1.2566 -2.4959 -0.1294 10 1 0.3097 -2.3219 -0.6405 11 6 2.0837 -3.4740 -0.9232 12 8 2.7914 -4.2698 -0.3523 13 7 2.0340 -3.4613 -2.2700 14 7 1.2620 -2.5980 -3.0562 15 6 1.4696 -2.8693 -4.3154 16 6 2.3864 -3.9376 -4.3988 17 6 2.8948 -4.5642 -5.6435 18 7 3.7681 -5.5736 -5.7224 19 7 3.9828 -5.8698 -6.9549 20 7 3.2856 -5.0975 -7.7161 21 1 3.2642 -5.1109 -8.6857 22 7 2.5638 -4.2319 -6.8778 23 6 2.7291 -4.2881 -3.1067 24 7 3.6096 -5.2890 -2.7309 25 6 0.9906 -3.0602 1.2424 26 6 2.0341 -3.2356 2.1319 27 6 1.7896 -3.7492 3.3918 28 6 0.5027 -4.0959 3.7590 29 6 -0.5401 -3.9253 2.8676 30 6 -0.2961 -3.4077 1.6094 31 1 -0.4849 0.8400 0.0004 32 1 1.0133 -2.3629 -5.1532 33 1 4.0542 -5.8230 -3.4076 34 1 3.7817 -5.4559 -1.7910 35 1 3.0402 -2.9686 1.8437 36 1 2.6042 -3.8821 4.0883 37 1 0.3119 -4.4996 4.7424 38 1 -1.5453 -4.1966 3.1544 39 1 -1.1108 -3.2741 0.9131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:10 Heat of formation + Delta-G solvation = 193.984568 kcal Electronic energy + Delta-G solvation = -28427.579422 eV Core-core repulsion = 24375.142766 eV Total energy + Delta-G solvation = -4052.436656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.11138 -41.49002 -39.00948 -37.74315 -34.85273 -33.79018 -33.69342 -32.92466 -31.64902 -31.11860 -30.03063 -28.47386 -27.58243 -24.73582 -24.51405 -23.35973 -22.55786 -21.69287 -20.93403 -20.31362 -19.22136 -18.73072 -17.22409 -16.83060 -16.48909 -16.28084 -15.96206 -15.66025 -15.39304 -14.78734 -14.66063 -14.36367 -14.02363 -13.95279 -13.44887 -13.18005 -13.00849 -12.54852 -12.32503 -12.26233 -11.78882 -11.76181 -11.23898 -11.17441 -11.09174 -10.99471 -10.92707 -10.79789 -10.52033 -10.44085 -10.32260 -10.11724 -9.62033 -9.27201 -9.16899 -8.69071 -8.04674 -7.75433 -7.63547 -6.27062 -4.33453 0.86482 1.46329 2.09244 2.09714 2.23408 2.28606 2.58559 3.22885 3.28352 3.28565 3.30455 3.41412 3.86231 3.92629 4.22252 4.28840 4.62547 4.82720 5.11070 5.20215 5.47092 5.57868 5.64431 5.72440 5.80729 5.81255 5.93228 6.13253 6.35743 6.41023 6.48730 6.49217 6.76787 6.83196 6.96362 7.08406 7.28156 7.32077 7.34525 7.57195 7.63594 7.69637 7.84356 7.90732 7.99361 8.16178 8.34044 8.69483 9.31187 10.81715 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.003683 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.944383 B = 7600.335570 C = 9029.793110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.085 3.915 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.069 3.931 10 H 0.105 0.895 11 C 0.566 3.434 12 O -0.512 6.512 13 N -0.373 5.373 14 N -0.242 5.242 15 C 0.130 3.870 16 C -0.273 4.273 17 C 0.318 3.682 18 N -0.324 5.324 19 N 0.006 4.994 20 N -0.305 5.305 21 H 0.466 0.534 22 N -0.307 5.307 23 C 0.438 3.562 24 N -0.816 5.816 25 C -0.030 4.030 26 C -0.081 4.081 27 C -0.136 4.136 28 C -0.144 4.144 29 C -0.133 4.133 30 C -0.114 4.114 31 H 0.269 0.731 32 H 0.195 0.805 33 H 0.423 0.577 34 H 0.418 0.582 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -8.629 -8.970 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.122 4.122 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.048 3.952 10 H 0.123 0.877 11 C 0.362 3.638 12 O -0.382 6.382 13 N -0.176 5.176 14 N -0.058 5.058 15 C -0.066 4.066 16 C -0.294 4.294 17 C 0.038 3.962 18 N -0.204 5.204 19 N 0.010 4.990 20 N -0.152 5.152 21 H 0.320 0.680 22 N -0.152 5.152 23 C 0.207 3.793 24 N -0.365 5.365 25 C -0.031 4.031 26 C -0.099 4.099 27 C -0.154 4.154 28 C -0.162 4.162 29 C -0.151 4.151 30 C -0.132 4.132 31 H 0.079 0.921 32 H 0.212 0.788 33 H 0.257 0.743 34 H 0.252 0.748 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.662 -8.591 -7.917 11.982 hybrid contribution 0.913 0.526 -0.976 1.436 sum 3.574 -8.065 -8.893 12.526 Atomic orbital electron populations 1.69891 1.05971 1.27689 1.46319 1.24862 0.94888 0.99250 0.93225 0.86526 0.79694 0.82233 0.78919 1.19863 1.20859 1.19992 1.20397 0.93009 0.87836 1.53681 0.92177 1.18083 0.98280 0.90789 0.88029 0.87726 1.22615 0.81312 0.82347 0.77535 1.90417 1.40670 1.39564 1.67509 1.47830 1.35446 1.27267 1.07072 1.77837 1.14817 1.11898 1.01251 1.23911 0.93994 0.93132 0.95553 1.16442 1.17154 1.10610 0.85198 1.22476 0.91419 0.90808 0.91457 1.75215 1.18919 1.16490 1.09750 1.78210 1.11247 1.12811 0.96720 1.50921 1.29608 1.22562 1.12129 0.67986 1.78941 1.19790 1.15921 1.00506 1.18710 0.86065 0.85230 0.89269 1.42301 1.45838 1.35202 1.13180 1.20142 0.92548 0.93016 0.97365 1.20919 0.99297 0.97096 0.92637 1.20990 0.96319 1.01393 0.96712 1.20854 0.93389 1.03062 0.98934 1.20925 0.98114 1.01542 0.94507 1.21026 0.96806 0.98960 0.96431 0.92139 0.78790 0.74324 0.74798 0.86636 0.87430 0.87575 0.87362 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.84 12.85 55.43 0.71 -22.13 16 2 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.51 -13.04 7.64 -34.44 -0.26 -13.30 16 8 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 9 C 0.07 1.63 2.05 -94.07 -0.19 1.44 16 10 H 0.10 2.65 6.85 -51.93 -0.36 2.29 16 11 C 0.57 12.30 6.94 -10.99 -0.08 12.22 16 12 O -0.51 -10.92 13.35 5.94 0.08 -10.84 16 13 N -0.37 -7.43 3.65 -10.97 -0.04 -7.47 16 14 N -0.24 -4.74 11.77 30.81 0.36 -4.38 16 15 C 0.13 2.07 11.97 -17.07 -0.20 1.87 16 16 C -0.27 -4.36 6.15 -104.70 -0.64 -5.00 16 17 C 0.32 4.61 8.14 -156.43 -1.27 3.34 16 18 N -0.32 -4.47 10.70 32.11 0.34 -4.13 16 19 N 0.01 0.08 13.42 60.35 0.81 0.89 16 20 N -0.31 -2.90 8.44 60.35 0.51 -2.39 16 21 H 0.47 2.17 8.96 -331.92 -2.98 -0.81 16 22 N -0.31 -3.91 12.90 32.12 0.41 -3.50 16 23 C 0.44 7.55 7.93 -152.10 -1.21 6.35 16 24 N -0.82 -12.00 9.01 31.61 0.28 -11.72 16 25 C -0.03 -0.67 4.57 -104.62 -0.48 -1.14 16 26 C -0.08 -1.74 8.03 -39.59 -0.32 -2.06 16 27 C -0.14 -2.54 10.05 -39.58 -0.40 -2.93 16 28 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 29 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 30 C -0.11 -2.38 9.67 -39.58 -0.38 -2.76 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.20 2.40 8.06 -52.48 -0.42 1.98 16 33 H 0.42 5.45 7.22 -40.82 -0.29 5.15 16 34 H 0.42 6.23 6.69 -40.82 -0.27 5.96 16 35 H 0.12 2.51 7.65 -52.48 -0.40 2.11 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.11 2.32 7.96 -52.49 -0.42 1.91 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -29.85 349.34 -8.57 -38.42 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.95 Total: 12.36 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -6.33 Total: -5.68 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 3.40 Total: -54.83 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.85 -8.57 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.401 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds